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Author |
Ferran Poveda; Debora Gil ;Albert Andaluz ;Enric Marti |
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Title |
Multiscale Tractography for Representing Heart Muscular Architecture |
Type |
Conference Article |
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Year |
2011 |
Publication |
In MICCAI 2011 Workshop on Computational Diffusion MRI |
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Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. Although the muscular architecture of the heart has been debated by countless researchers, the controversy is still alive. Diffusion Tensor MRI, DT-MRI, is a unique imaging technique for computational validation of the muscular structure of the heart. By the complex arrangement of myocites, existing techniques can not provide comprehensive descriptions of the global muscular architecture. In this paper we introduce a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and indicate a global helical organization |
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english |
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CDRMI |
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IAM |
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no |
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Call Number |
IAM @ iam @ PGA2011 |
Serial |
1681 |
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Author |
Patricia Marquez; Debora Gil; Aura Hernandez-Sabate |
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Title |
A Confidence Measure for Assessing Optical Flow Accuracy in the Absence of Ground Truth |
Type |
Conference Article |
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Year |
2011 |
Publication |
IEEE International Conference on Computer Vision – Workshops |
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2042-2049 |
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IEEE International Conference on Computer Vision – Workshops |
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Optical flow is a valuable tool for motion analysis in autonomous navigation systems. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in real world sequences. This paper introduces a measure of optical flow accuracy for Lucas-Kanade based flows in terms of the numerical stability of the data-term. We call this measure optical flow condition number. A statistical analysis over ground-truth data show a good statistical correlation between the condition number and optical flow error. Experiments on driving sequences illustrate its potential for autonomous navigation systems. |
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IEEE |
Place of Publication |
Barcelona (Spain) |
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English |
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English |
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ICCVW |
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IAM; ADAS |
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no |
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Call Number |
IAM @ iam @ MGH2011 |
Serial |
1682 |
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Author |
Aura Hernandez-Sabate; Debora Gil |
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Title |
The Benefits of IVUS Dynamics for Retrieving Stable Models of Arteries |
Type |
Book Chapter |
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Year |
2012 |
Publication |
Intravascular Ultrasound |
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Pages |
185-206 |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
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Publisher |
Intech |
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Editor |
Yasuhiro Honda |
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English |
Summary Language |
english |
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978-953-307-900-4 |
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IAM; ADAS |
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no |
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Call Number |
IAM @ iam @ HeG2012 |
Serial |
1684 |
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Author |
Sergio Vera; Debora Gil; Antonio Lopez; Miguel Angel Gonzalez Ballester |
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Title |
Multilocal Creaseness Measure |
Type |
Journal |
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Year |
2012 |
Publication |
The Insight Journal |
Abbreviated Journal |
IJ |
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Keywords |
Ridges, Valley, Creaseness, Structure Tensor, Skeleton, |
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Abstract |
This document describes the implementation using the Insight Toolkit of an algorithm for detecting creases (ridges and valleys) in N-dimensional images, based on the Local Structure Tensor of the image. In addition to the filter used to calculate the creaseness image, a filter for the computation of the structure tensor is also included in this submission. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
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Corporate Author |
Alma IT Systems |
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english |
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english |
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Notes |
IAM;ADAS; |
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no |
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Call Number |
IAM @ iam @ VGL2012 |
Serial |
1840 |
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Author |
Carles Sanchez |
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Title |
Tracheal ring detection in bronchoscopy |
Type |
Report |
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Year |
2011 |
Publication |
CVC Technical Report |
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Volume |
168 |
Issue |
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Keywords |
Bronchoscopy, tracheal ring, segmentation |
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Abstract |
Endoscopy is the process in which a camera is introduced inside a human.
Given that endoscopy provides realistic images (in contrast to other modalities) and allows non-invase minimal intervention procedures (which can aid in diagnosis and surgical interventions), its use has spreaded during last decades.
In this project we will focus on bronchoscopic procedures, during which the camera is introduced through the trachea in order to have a diagnostic of the patient. The diagnostic interventions are focused on: degree of stenosis (reduction in tracheal area), prosthesis or early diagnosis of tumors. In the first case, assessment of the luminal area and the calculation of the diameters of the tracheal rings are required. A main limitation is that all the process is done by hand,
which means that the doctor takes all the measurements and decisions just by looking at the screen. As far as we know there is no computational framework for helping the doctors in the diagnosis.
This project will consist of analysing bronchoscopic videos in order to extract useful information for the diagnostic of the degree of stenosis. In particular we will focus on segmentation of the tracheal rings. As a result of this project several strategies (for detecting tracheal rings) had been implemented in order to compare their performance. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
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Thesis |
Master's thesis |
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Place of Publication |
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Editor |
Debora Gil, F.Javier Sanchez |
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Language |
english |
Summary Language |
english |
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Notes |
IAM;MV |
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no |
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Call Number |
IAM @ iam @ San2011 |
Serial |
1841 |
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Permanent link to this record |
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Author |
Javier Marin; David Geronimo; David Vazquez; Antonio Lopez |
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Title |
Pedestrian Detection: Exploring Virtual Worlds |
Type |
Book Chapter |
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Year |
2012 |
Publication |
Handbook of Pattern Recognition: Methods and Application |
Abbreviated Journal |
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Volume |
5 |
Issue |
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Pages |
145-162 |
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Keywords |
Virtual worlds; Pedestrian Detection; Domain Adaptation |
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Abstract |
Handbook of pattern recognition will include contributions from university educators and active research experts. This Handbook is intended to serve as a basic reference on methods and applications of pattern recognition. The primary aim of this handbook is providing the community of pattern recognition with a readable, easy to understand resource that covers introductory, intermediate and advanced topics with equal clarity. Therefore, the Handbook of pattern recognition can serve equally well as reference resource and as classroom textbook. Contributions cover all methods, techniques and applications of pattern recognition. A tentative list of relevant topics might include: 1- Statistical, structural, syntactic pattern recognition. 2- Neural networks, machine learning, data mining. 3- Discrete geometry, algebraic, graph-based techniques for pattern recognition. 4- Face recognition, Signal analysis, image coding and processing, shape and texture analysis. 5- Document processing, text and graphics recognition, digital libraries. 6- Speech recognition, music analysis, multimedia systems. 7- Natural language analysis, information retrieval. 8- Biometrics, biomedical pattern analysis and information systems. 9- Other scientific, engineering, social and economical applications of pattern recognition. 10- Special hardware architectures, software packages for pattern recognition. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
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Publisher |
iConcept Press |
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English |
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ISBN |
978-1-477554-82-1 |
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Notes |
ADAS |
Approved |
no |
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Call Number |
ADAS @ adas @ MGV2012 |
Serial |
1979 |
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Permanent link to this record |
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Author |
David Vazquez; Antonio Lopez; Daniel Ponsa; Javier Marin |
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Title |
Virtual Worlds and Active Learning for Human Detection |
Type |
Conference Article |
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Year |
2011 |
Publication |
13th International Conference on Multimodal Interaction |
Abbreviated Journal |
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Volume |
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Pages |
393-400 |
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Keywords |
Pedestrian Detection; Human detection; Virtual; Domain Adaptation; Active Learning |
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Abstract |
Image based human detection is of paramount interest due to its potential applications in fields such as advanced driving assistance, surveillance and media analysis. However, even detecting non-occluded standing humans remains a challenge of intensive research. The most promising human detectors rely on classifiers developed in the discriminative paradigm, i.e., trained with labelled samples. However, labeling is a manual intensive step, especially in cases like human detection where it is necessary to provide at least bounding boxes framing the humans for training. To overcome such problem, some authors have proposed the use of a virtual world where the labels of the different objects are obtained automatically. This means that the human models (classifiers) are learnt using the appearance of rendered images, i.e., using realistic computer graphics. Later, these models are used for human detection in images of the real world. The results of this technique are surprisingly good. However, these are not always as good as the classical approach of training and testing with data coming from the same camera, or similar ones. Accordingly, in this paper we address the challenge of using a virtual world for gathering (while playing a videogame) a large amount of automatically labelled samples (virtual humans and background) and then training a classifier that performs equal, in real-world images, than the one obtained by equally training from manually labelled real-world samples. For doing that, we cast the problem as one of domain adaptation. In doing so, we assume that a small amount of manually labelled samples from real-world images is required. To collect these labelled samples we propose a non-standard active learning technique. Therefore, ultimately our human model is learnt by the combination of virtual and real world labelled samples (Fig. 1), which has not been done before. We present quantitative results showing that this approach is valid. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
Alicante, Spain |
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Publisher |
ACM DL |
Place of Publication |
New York, NY, USA, USA |
Editor |
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Language |
English |
Summary Language |
English |
Original Title |
Virtual Worlds and Active Learning for Human Detection |
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ISBN |
978-1-4503-0641-6 |
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ICMI |
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Notes |
ADAS |
Approved |
yes |
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Call Number |
ADAS @ adas @ VLP2011a |
Serial |
1683 |
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Permanent link to this record |
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Author |
Patricia Marquez; Debora Gil ; Aura Hernandez-Sabate |
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Title |
Error Analysis for Lucas-Kanade Based Schemes |
Type |
Conference Article |
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Year |
2012 |
Publication |
9th International Conference on Image Analysis and Recognition |
Abbreviated Journal |
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Volume |
7324 |
Issue |
I |
Pages |
184-191 |
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Keywords |
Optical flow, Confidence measure, Lucas-Kanade, Cardiac Magnetic Resonance |
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Abstract |
Optical flow is a valuable tool for motion analysis in medical imaging sequences. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in medical sequences. This paper presents an error analysis of Lucas-Kanade schemes in terms of intrinsic design errors and numerical stability of the algorithm. Our analysis provides a confidence measure that is naturally correlated to the accuracy of the flow field. Our experiments show the higher predictive value of our confidence measure compared to existing measures. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
Aveiro, Portugal |
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Publisher |
Springer-Verlag Berlin Heidelberg |
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Language |
english |
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Original Title |
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Series Editor |
Campilho, Aurélio and Kamel, Mohamed |
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
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Edition |
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ISSN |
0302-9743 |
ISBN |
978-3-642-31294-6 |
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Conference |
ICIAR |
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Notes |
IAM |
Approved |
no |
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Call Number |
IAM @ iam @ MGH2012a |
Serial |
1899 |
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Permanent link to this record |
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Author |
David Vazquez |
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Title |
Domain Adaptation of Virtual and Real Worlds for Pedestrian Detection |
Type |
Book Whole |
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Year |
2013 |
Publication |
PhD Thesis, Universitat de Barcelona-CVC |
Abbreviated Journal |
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Volume |
1 |
Issue |
1 |
Pages |
1-105 |
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Keywords |
Pedestrian Detection; Domain Adaptation |
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Abstract |
Pedestrian detection is of paramount interest for many applications, e.g. Advanced Driver Assistance Systems, Intelligent Video Surveillance and Multimedia systems. Most promising pedestrian detectors rely on appearance-based classifiers trained with annotated data. However, the required annotation step represents an intensive and subjective task for humans, what makes worth to minimize their intervention in this process by using computational tools like realistic virtual worlds. The reason to use these kind of tools relies in the fact that they allow the automatic generation of precise and rich annotations of visual information. Nevertheless, the use of this kind of data comes with the following question: can a pedestrian appearance model learnt with virtual-world data work successfully for pedestrian detection in real-world scenarios?. To answer this question, we conduct different experiments that suggest a positive answer. However, the pedestrian classifiers trained with virtual-world data can suffer the so called dataset shift problem as real-world based classifiers does. Accordingly, we have designed different domain adaptation techniques to face this problem, all of them integrated in a same framework (V-AYLA). We have explored different methods to train a domain adapted pedestrian classifiers by collecting a few pedestrian samples from the target domain (real world) and combining them with many samples of the source domain (virtual world). The extensive experiments we present show that pedestrian detectors developed within the V-AYLA framework do achieve domain adaptation. Ideally, we would like to adapt our system without any human intervention. Therefore, as a first proof of concept we also propose an unsupervised domain adaptation technique that avoids human intervention during the adaptation process. To the best of our knowledge, this Thesis work is the first demonstrating adaptation of virtual and real worlds for developing an object detector. Last but not least, we also assessed a different strategy to avoid the dataset shift that consists in collecting real-world samples and retrain with them in such a way that no bounding boxes of real-world pedestrians have to be provided. We show that the generated classifier is competitive with respect to the counterpart trained with samples collected by manually annotating pedestrian bounding boxes. The results presented on this Thesis not only end with a proposal for adapting a virtual-world pedestrian detector to the real world, but also it goes further by pointing out a new methodology that would allow the system to adapt to different situations, which we hope will provide the foundations for future research in this unexplored area. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
Barcelona |
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Corporate Author |
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Thesis |
Ph.D. thesis |
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Publisher |
Ediciones Graficas Rey |
Place of Publication |
Barcelona |
Editor |
Antonio Lopez;Daniel Ponsa |
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Language |
English |
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ISBN |
978-84-940530-1-6 |
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Notes |
adas |
Approved |
yes |
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Call Number |
ADAS @ adas @ Vaz2013 |
Serial |
2276 |
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Permanent link to this record |
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Author |
Debora Gil; Agnes Borras; Manuel Ballester; Francesc Carreras; Ruth Aris; Manuel Vazquez; Enric Marti; Ferran Poveda |
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Title |
MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis |
Type |
Conference Article |
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Year |
2011 |
Publication |
14th International Symposium on Applied Sciences in Biomedical and Communication Technologies |
Abbreviated Journal |
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Abstract |
Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
Barcelona; Spain |
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Corporate Author |
Association for Computing Machinery |
Thesis |
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Publisher |
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Place of Publication |
Barcelona, Spain |
Editor |
Association for Computing Machinery |
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Language |
english |
Summary Language |
english |
Original Title |
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Series Editor |
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ISBN |
978-1-4503-0913-4 |
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Conference |
ISABEL |
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Notes |
IAM |
Approved |
no |
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Call Number |
IAM @ iam @ GGB2011 |
Serial |
1691 |
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Permanent link to this record |
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Author |
Albert Andaluz |
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Title |
Harmonic Phase Flow: User's guide |
Type |
Manual |
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Year |
2012 |
Publication |
CVC |
Abbreviated Journal |
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Abstract |
HPF is a plugin for the computation of clinical scores under Osirix.
This manual provides a basic guide for experienced clinical staff. Chapter 1 provides the theoretical background in which this plugin is based.
Next, in chapter 2 we provide basic instructions for installing and uninstalling this plugin. chapter 3we shows a step-by-step scenario to compute clinical scores from tagged-MRI images with HPF. Finally, in chapter 4 we provide a quick guide for plugin developers |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
Bellaterra, Barcelona (Spain) |
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Corporate Author |
Computer Vision Center |
Thesis |
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Publisher |
CVC |
Place of Publication |
Barcelona |
Editor |
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Language |
english |
Summary Language |
english |
Original Title |
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Series Editor |
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Notes |
IAM |
Approved |
no |
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Call Number |
IAM @ iam @ And2012 |
Serial |
1863 |
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Permanent link to this record |
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Author |
David Geronimo; Frederic Lerasle; Antonio Lopez |
![download PDF file pdf](img/file_PDF.gif)
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Title |
State-driven particle filter for multi-person tracking |
Type |
Conference Article |
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Year |
2012 |
Publication |
11th International Conference on Advanced Concepts for Intelligent Vision Systems |
Abbreviated Journal |
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Volume |
7517 |
Issue |
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Pages |
467-478 |
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Keywords |
human tracking |
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Abstract |
Multi-person tracking can be exploited in applications such as driver assistance, surveillance, multimedia and human-robot interaction. With the help of human detectors, particle filters offer a robust method able to filter noisy detections and provide temporal coherence. However, some traditional problems such as occlusions with other targets or the scene, temporal drifting or even the lost targets detection are rarely considered, making the systems performance decrease. Some authors propose to overcome these problems using heuristics not explained
and formalized in the papers, for instance by defining exceptions to the model updating depending on tracks overlapping. In this paper we propose to formalize these events by the use of a state-graph, defining the current state of the track (e.g., potential , tracked, occluded or lost) and the transitions between states in an explicit way. This approach has the advantage of linking track actions such as the online underlying models updating, which gives flexibility to the system. It provides an explicit representation to adapt the multiple parallel trackers depending on the context, i.e., each track can make use of a specific filtering strategy, dynamic model, number of particles, etc. depending on its state. We implement this technique in a single-camera multi-person tracker and test
it in public video sequences. |
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Brno, Chzech Republic |
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Springer |
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Heidelberg |
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J. Blanc-Talon et al. |
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English |
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ADAS |
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yes |
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GLL2012; ADAS @ adas @ gll2012a |
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1990 |
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Author |
Yainuvis Socarras; David Vazquez; Antonio Lopez; David Geronimo; Theo Gevers |
![download PDF file pdf](img/file_PDF.gif)
![find book details (via ISBN) isbn](img/isbn.gif)
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Title |
Improving HOG with Image Segmentation: Application to Human Detection |
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Conference Article |
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2012 |
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11th International Conference on Advanced Concepts for Intelligent Vision Systems |
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7517 |
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178-189 |
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Segmentation; Pedestrian Detection |
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Abstract |
In this paper we improve the histogram of oriented gradients (HOG), a core descriptor of state-of-the-art object detection, by the use of higher-level information coming from image segmentation. The idea is to re-weight the descriptor while computing it without increasing its size. The benefits of the proposal are two-fold: (i) to improve the performance of the detector by enriching the descriptor information and (ii) take advantage of the information of image segmentation, which in fact is likely to be used in other stages of the detection system such as candidate generation or refinement.
We test our technique in the INRIA person dataset, which was originally developed to test HOG, embedding it in a human detection system. The well-known segmentation method, mean-shift (from smaller to larger super-pixels), and different methods to re-weight the original descriptor (constant, region-luminance, color or texture-dependent) has been evaluated. We achieve performance improvements of 4:47% in detection rate through the use of differences of color between contour pixel neighborhoods as re-weighting function. |
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Address ![sorted by Address field, ascending order (up)](img/sort_asc.gif) |
Brno, Czech Republic |
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Springer Berlin Heidelberg |
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J. Blanc-Talon et al. |
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English |
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LNCS |
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0302-9743 |
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978-3-642-33139-8 |
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ADAS @ adas @ SLV2012 |
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1980 |
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Author |
David Roche; Debora Gil; Jesus Giraldo |
![download PDF file pdf](img/file_PDF.gif)
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Title |
Assessing agonist efficacy in an uncertain Em world |
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Conference Article |
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2012 |
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40th Keystone Symposia on mollecular and celular biology |
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79 |
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The operational model of agonism has been widely used for the analysis of agonist action since its formulation in 1983. The model includes the Em parameter, which is defined as the maximum response of the system. The methods for Em estimation provide Em values not significantly higher than the maximum responses achieved by full agonists. However, it has been found that that some classes of compounds as, for instance, superagonists and positive allosteric modulators can increase the full agonist maximum response, implying upper limits for Em and thereby posing doubts on the validity of Em estimates. Because of the correlation between Em and operational efficacy, τ, wrong Em estimates will yield wrong τ estimates.
In this presentation, the operational model of agonism and various methods for the simulation of allosteric modulation will be analyzed. Alternatives for curve fitting will be presented and discussed. |
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Fairmont Banff Springs, Banff, Alberta, Canada |
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Keystone Symposia |
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Keystone Symposia |
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A. Christopoulus and M. Bouvier |
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english |
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english |
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Keystone Symposia |
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KSMCB |
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IAM |
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IAM @ iam @ RGG2012 |
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1855 |
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Author |
David Vazquez; Antonio Lopez; Daniel Ponsa; Javier Marin |
![download PDF file pdf](img/file_PDF.gif)
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Title |
Cool world: domain adaptation of virtual and real worlds for human detection using active learning |
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2011 |
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NIPS Domain Adaptation Workshop: Theory and Application |
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NIPS-DA |
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Pedestrian Detection; Virtual; Domain Adaptation; Active Learning |
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Abstract |
Image based human detection is of paramount interest for different applications. The most promising human detectors rely on discriminatively learnt classifiers, i.e., trained with labelled samples. However, labelling is a manual intensive task, especially in cases like human detection where it is necessary to provide at least bounding boxes framing the humans for training. To overcome such problem, in Marin et al. we have proposed the use of a virtual world where the labels of the different objects are obtained automatically. This means that the human models (classifiers) are learnt using the appearance of realistic computer graphics. Later, these models are used for human detection in images of the real world. The results of this technique are surprisingly good. However, these are not always as good as the classical approach of training and testing with data coming from the same camera and the same type of scenario. Accordingly, in Vazquez et al. we cast the problem as one of supervised domain adaptation. In doing so, we assume that a small amount of manually labelled samples from real-world images is required. To collect these labelled samples we use an active learning technique. Thus, ultimately our human model is learnt by the combination of virtual- and real-world labelled samples which, to the best of our knowledge, was not done before. Here, we term such combined space cool world. In this extended abstract we summarize our proposal, and include quantitative results from Vazquez et al. showing its validity. |
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Granada, Spain |
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Granada, Spain |
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English |
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English |
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DA-NIPS |
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ADAS |
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no |
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ADAS @ adas @ VLP2011b |
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1756 |
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