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Author |
Albert Andaluz |
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Title |
Harmonic Phase Flow: User's guide |
Type |
Manual |
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Year |
2012 |
Publication |
CVC |
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Abstract |
HPF is a plugin for the computation of clinical scores under Osirix.
This manual provides a basic guide for experienced clinical staff. Chapter 1 provides the theoretical background in which this plugin is based.
Next, in chapter 2 we provide basic instructions for installing and uninstalling this plugin. chapter 3we shows a step-by-step scenario to compute clinical scores from tagged-MRI images with HPF. Finally, in chapter 4 we provide a quick guide for plugin developers |
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Address |
Bellaterra, Barcelona (Spain) |
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Corporate Author |
Computer Vision Center |
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CVC |
Place of Publication |
Barcelona |
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english |
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english |
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IAM |
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no |
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Call Number |
IAM @ iam @ And2012 |
Serial |
1863 |
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Author |
Aura Hernandez-Sabate; Debora Gil |
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Title |
The Benefits of IVUS Dynamics for Retrieving Stable Models of Arteries |
Type |
Book Chapter |
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Year |
2012 |
Publication |
Intravascular Ultrasound |
Abbreviated Journal |
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Volume |
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Pages |
185-206 |
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Publisher |
Intech |
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Editor |
Yasuhiro Honda |
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Language |
English |
Summary Language |
english |
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978-953-307-900-4 |
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Notes |
IAM; ADAS |
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no |
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Call Number |
IAM @ iam @ HeG2012 |
Serial |
1684 |
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Author |
Carles Sanchez |
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Title |
Tracheal ring detection in bronchoscopy |
Type |
Report |
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Year |
2011 |
Publication |
CVC Technical Report |
Abbreviated Journal |
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Volume |
168 |
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Keywords |
Bronchoscopy, tracheal ring, segmentation |
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Abstract |
Endoscopy is the process in which a camera is introduced inside a human.
Given that endoscopy provides realistic images (in contrast to other modalities) and allows non-invase minimal intervention procedures (which can aid in diagnosis and surgical interventions), its use has spreaded during last decades.
In this project we will focus on bronchoscopic procedures, during which the camera is introduced through the trachea in order to have a diagnostic of the patient. The diagnostic interventions are focused on: degree of stenosis (reduction in tracheal area), prosthesis or early diagnosis of tumors. In the first case, assessment of the luminal area and the calculation of the diameters of the tracheal rings are required. A main limitation is that all the process is done by hand,
which means that the doctor takes all the measurements and decisions just by looking at the screen. As far as we know there is no computational framework for helping the doctors in the diagnosis.
This project will consist of analysing bronchoscopic videos in order to extract useful information for the diagnostic of the degree of stenosis. In particular we will focus on segmentation of the tracheal rings. As a result of this project several strategies (for detecting tracheal rings) had been implemented in order to compare their performance. |
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Thesis |
Master's thesis |
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Place of Publication |
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Editor |
Debora Gil, F.Javier Sanchez |
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Language |
english |
Summary Language |
english |
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Notes |
IAM;MV |
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no |
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Call Number |
IAM @ iam @ San2011 |
Serial |
1841 |
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Author |
David Geronimo; Frederic Lerasle; Antonio Lopez |
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Title |
State-driven particle filter for multi-person tracking |
Type |
Conference Article |
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Year |
2012 |
Publication |
11th International Conference on Advanced Concepts for Intelligent Vision Systems |
Abbreviated Journal |
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Volume |
7517 |
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Pages |
467-478 |
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Keywords |
human tracking |
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Abstract |
Multi-person tracking can be exploited in applications such as driver assistance, surveillance, multimedia and human-robot interaction. With the help of human detectors, particle filters offer a robust method able to filter noisy detections and provide temporal coherence. However, some traditional problems such as occlusions with other targets or the scene, temporal drifting or even the lost targets detection are rarely considered, making the systems performance decrease. Some authors propose to overcome these problems using heuristics not explained
and formalized in the papers, for instance by defining exceptions to the model updating depending on tracks overlapping. In this paper we propose to formalize these events by the use of a state-graph, defining the current state of the track (e.g., potential , tracked, occluded or lost) and the transitions between states in an explicit way. This approach has the advantage of linking track actions such as the online underlying models updating, which gives flexibility to the system. It provides an explicit representation to adapt the multiple parallel trackers depending on the context, i.e., each track can make use of a specific filtering strategy, dynamic model, number of particles, etc. depending on its state. We implement this technique in a single-camera multi-person tracker and test
it in public video sequences. |
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Address |
Brno, Chzech Republic |
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Springer |
Place of Publication |
Heidelberg |
Editor |
J. Blanc-Talon et al. |
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English |
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ACIVS |
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Notes |
ADAS |
Approved |
yes |
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Call Number |
GLL2012; ADAS @ adas @ gll2012a |
Serial |
1990 |
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Permanent link to this record |
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Author |
David Roche; Debora Gil; Jesus Giraldo |
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Title |
Assessing agonist efficacy in an uncertain Em world |
Type |
Conference Article |
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Year |
2012 |
Publication |
40th Keystone Symposia on mollecular and celular biology |
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Pages |
79 |
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Abstract |
The operational model of agonism has been widely used for the analysis of agonist action since its formulation in 1983. The model includes the Em parameter, which is defined as the maximum response of the system. The methods for Em estimation provide Em values not significantly higher than the maximum responses achieved by full agonists. However, it has been found that that some classes of compounds as, for instance, superagonists and positive allosteric modulators can increase the full agonist maximum response, implying upper limits for Em and thereby posing doubts on the validity of Em estimates. Because of the correlation between Em and operational efficacy, τ, wrong Em estimates will yield wrong τ estimates.
In this presentation, the operational model of agonism and various methods for the simulation of allosteric modulation will be analyzed. Alternatives for curve fitting will be presented and discussed. |
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Address |
Fairmont Banff Springs, Banff, Alberta, Canada |
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Corporate Author |
Keystone Symposia |
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Publisher |
Keystone Symposia |
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Editor |
A. Christopoulus and M. Bouvier |
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Language |
english |
Summary Language |
english |
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Keystone Symposia |
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KSMCB |
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Notes |
IAM |
Approved |
no |
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Call Number |
IAM @ iam @ RGG2012 |
Serial |
1855 |
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Permanent link to this record |
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Author |
David Vazquez |
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Title |
Domain Adaptation of Virtual and Real Worlds for Pedestrian Detection |
Type |
Book Whole |
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Year |
2013 |
Publication |
PhD Thesis, Universitat de Barcelona-CVC |
Abbreviated Journal |
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Volume |
1 |
Issue |
1 |
Pages |
1-105 |
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Keywords |
Pedestrian Detection; Domain Adaptation |
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Abstract |
Pedestrian detection is of paramount interest for many applications, e.g. Advanced Driver Assistance Systems, Intelligent Video Surveillance and Multimedia systems. Most promising pedestrian detectors rely on appearance-based classifiers trained with annotated data. However, the required annotation step represents an intensive and subjective task for humans, what makes worth to minimize their intervention in this process by using computational tools like realistic virtual worlds. The reason to use these kind of tools relies in the fact that they allow the automatic generation of precise and rich annotations of visual information. Nevertheless, the use of this kind of data comes with the following question: can a pedestrian appearance model learnt with virtual-world data work successfully for pedestrian detection in real-world scenarios?. To answer this question, we conduct different experiments that suggest a positive answer. However, the pedestrian classifiers trained with virtual-world data can suffer the so called dataset shift problem as real-world based classifiers does. Accordingly, we have designed different domain adaptation techniques to face this problem, all of them integrated in a same framework (V-AYLA). We have explored different methods to train a domain adapted pedestrian classifiers by collecting a few pedestrian samples from the target domain (real world) and combining them with many samples of the source domain (virtual world). The extensive experiments we present show that pedestrian detectors developed within the V-AYLA framework do achieve domain adaptation. Ideally, we would like to adapt our system without any human intervention. Therefore, as a first proof of concept we also propose an unsupervised domain adaptation technique that avoids human intervention during the adaptation process. To the best of our knowledge, this Thesis work is the first demonstrating adaptation of virtual and real worlds for developing an object detector. Last but not least, we also assessed a different strategy to avoid the dataset shift that consists in collecting real-world samples and retrain with them in such a way that no bounding boxes of real-world pedestrians have to be provided. We show that the generated classifier is competitive with respect to the counterpart trained with samples collected by manually annotating pedestrian bounding boxes. The results presented on this Thesis not only end with a proposal for adapting a virtual-world pedestrian detector to the real world, but also it goes further by pointing out a new methodology that would allow the system to adapt to different situations, which we hope will provide the foundations for future research in this unexplored area. |
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Address |
Barcelona |
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Corporate Author |
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Thesis |
Ph.D. thesis |
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Publisher |
Ediciones Graficas Rey |
Place of Publication |
Barcelona |
Editor |
Antonio Lopez;Daniel Ponsa |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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ISBN |
978-84-940530-1-6 |
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Notes |
adas |
Approved |
yes |
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Call Number |
ADAS @ adas @ Vaz2013 |
Serial |
2276 |
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Permanent link to this record |
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Author |
David Vazquez; Antonio Lopez; Daniel Ponsa; David Geronimo |
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Title |
Interactive Training of Human Detectors |
Type |
Book Chapter |
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Year |
2013 |
Publication |
Multiodal Interaction in Image and Video Applications |
Abbreviated Journal |
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Volume |
48 |
Issue |
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Pages |
169-182 |
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Keywords |
Pedestrian Detection; Virtual World; AdaBoost; Domain Adaptation |
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Abstract |
Image based human detection remains as a challenging problem. Most promising detectors rely on classifiers trained with labelled samples. However, labelling is a manual labor intensive step. To overcome this problem we propose to collect images of pedestrians from a virtual city, i.e., with automatic labels, and train a pedestrian detector with them, which works fine when such virtual-world data are similar to testing one, i.e., real-world pedestrians in urban areas. When testing data is acquired in different conditions than training one, e.g., human detection in personal photo albums, dataset shift appears. In previous work, we cast this problem as one of domain adaptation and solve it with an active learning procedure. In this work, we focus on the same problem but evaluating a different set of faster to compute features, i.e., Haar, EOH and their combination. In particular, we train a classifier with virtual-world data, using such features and Real AdaBoost as learning machine. This classifier is applied to real-world training images. Then, a human oracle interactively corrects the wrong detections, i.e., few miss detections are manually annotated and some false ones are pointed out too. A low amount of manual annotation is fixed as restriction. Real- and virtual-world difficult samples are combined within what we call cool world and we retrain the classifier with this data. Our experiments show that this adapted classifier is equivalent to the one trained with only real-world data but requiring 90% less manual annotations. |
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Address |
Springer Heidelberg New York Dordrecht London |
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Publisher |
Springer Berlin Heidelberg |
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English |
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ISSN |
1868-4394 |
ISBN |
978-3-642-35931-6 |
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Notes |
ADAS; 600.057; 600.054; 605.203 |
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no |
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Call Number |
VLP2013; ADAS @ adas @ vlp2013 |
Serial |
2193 |
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Permanent link to this record |
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Author |
David Vazquez; Antonio Lopez; Daniel Ponsa; Javier Marin |
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Title |
Virtual Worlds and Active Learning for Human Detection |
Type |
Conference Article |
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Year |
2011 |
Publication |
13th International Conference on Multimodal Interaction |
Abbreviated Journal |
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Pages |
393-400 |
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Keywords |
Pedestrian Detection; Human detection; Virtual; Domain Adaptation; Active Learning |
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Abstract |
Image based human detection is of paramount interest due to its potential applications in fields such as advanced driving assistance, surveillance and media analysis. However, even detecting non-occluded standing humans remains a challenge of intensive research. The most promising human detectors rely on classifiers developed in the discriminative paradigm, i.e., trained with labelled samples. However, labeling is a manual intensive step, especially in cases like human detection where it is necessary to provide at least bounding boxes framing the humans for training. To overcome such problem, some authors have proposed the use of a virtual world where the labels of the different objects are obtained automatically. This means that the human models (classifiers) are learnt using the appearance of rendered images, i.e., using realistic computer graphics. Later, these models are used for human detection in images of the real world. The results of this technique are surprisingly good. However, these are not always as good as the classical approach of training and testing with data coming from the same camera, or similar ones. Accordingly, in this paper we address the challenge of using a virtual world for gathering (while playing a videogame) a large amount of automatically labelled samples (virtual humans and background) and then training a classifier that performs equal, in real-world images, than the one obtained by equally training from manually labelled real-world samples. For doing that, we cast the problem as one of domain adaptation. In doing so, we assume that a small amount of manually labelled samples from real-world images is required. To collect these labelled samples we propose a non-standard active learning technique. Therefore, ultimately our human model is learnt by the combination of virtual and real world labelled samples (Fig. 1), which has not been done before. We present quantitative results showing that this approach is valid. |
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Address |
Alicante, Spain |
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Thesis |
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Publisher |
ACM DL |
Place of Publication |
New York, NY, USA, USA |
Editor |
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Language |
English |
Summary Language |
English |
Original Title |
Virtual Worlds and Active Learning for Human Detection |
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Series Editor |
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ISBN |
978-1-4503-0641-6 |
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ICMI |
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Notes |
ADAS |
Approved |
yes |
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Call Number |
ADAS @ adas @ VLP2011a |
Serial |
1683 |
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Permanent link to this record |
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Author |
David Vazquez; Antonio Lopez; Daniel Ponsa; Javier Marin |
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Title |
Cool world: domain adaptation of virtual and real worlds for human detection using active learning |
Type |
Conference Article |
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Year |
2011 |
Publication |
NIPS Domain Adaptation Workshop: Theory and Application |
Abbreviated Journal |
NIPS-DA |
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Keywords |
Pedestrian Detection; Virtual; Domain Adaptation; Active Learning |
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Abstract |
Image based human detection is of paramount interest for different applications. The most promising human detectors rely on discriminatively learnt classifiers, i.e., trained with labelled samples. However, labelling is a manual intensive task, especially in cases like human detection where it is necessary to provide at least bounding boxes framing the humans for training. To overcome such problem, in Marin et al. we have proposed the use of a virtual world where the labels of the different objects are obtained automatically. This means that the human models (classifiers) are learnt using the appearance of realistic computer graphics. Later, these models are used for human detection in images of the real world. The results of this technique are surprisingly good. However, these are not always as good as the classical approach of training and testing with data coming from the same camera and the same type of scenario. Accordingly, in Vazquez et al. we cast the problem as one of supervised domain adaptation. In doing so, we assume that a small amount of manually labelled samples from real-world images is required. To collect these labelled samples we use an active learning technique. Thus, ultimately our human model is learnt by the combination of virtual- and real-world labelled samples which, to the best of our knowledge, was not done before. Here, we term such combined space cool world. In this extended abstract we summarize our proposal, and include quantitative results from Vazquez et al. showing its validity. |
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Address |
Granada, Spain |
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Place of Publication |
Granada, Spain |
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English |
Summary Language |
English |
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DA-NIPS |
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ADAS |
Approved |
no |
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Call Number |
ADAS @ adas @ VLP2011b |
Serial |
1756 |
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Permanent link to this record |
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Author |
David Vazquez; Jiaolong Xu; Sebastian Ramos; Antonio Lopez; Daniel Ponsa |
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Title |
Weakly Supervised Automatic Annotation of Pedestrian Bounding Boxes |
Type |
Conference Article |
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Year |
2013 |
Publication |
CVPR Workshop on Ground Truth – What is a good dataset? |
Abbreviated Journal |
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Pages |
706 - 711 |
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Keywords |
Pedestrian Detection; Domain Adaptation |
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Abstract |
Among the components of a pedestrian detector, its trained pedestrian classifier is crucial for achieving the desired performance. The initial task of the training process consists in collecting samples of pedestrians and background, which involves tiresome manual annotation of pedestrian bounding boxes (BBs). Thus, recent works have assessed the use of automatically collected samples from photo-realistic virtual worlds. However, learning from virtual-world samples and testing in real-world images may suffer the dataset shift problem. Accordingly, in this paper we assess an strategy to collect samples from the real world and retrain with them, thus avoiding the dataset shift, but in such a way that no BBs of real-world pedestrians have to be provided. In particular, we train a pedestrian classifier based on virtual-world samples (no human annotation required). Then, using such a classifier we collect pedestrian samples from real-world images by detection. After, a human oracle rejects the false detections efficiently (weak annotation). Finally, a new classifier is trained with the accepted detections. We show that this classifier is competitive with respect to the counterpart trained with samples collected by manually annotating hundreds of pedestrian BBs. |
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Address |
Portland; Oregon; June 2013 |
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Publisher |
IEEE |
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English |
Summary Language |
English |
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CVPRW |
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Notes |
ADAS; 600.054; 600.057; 601.217 |
Approved |
no |
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Call Number |
ADAS @ adas @ VXR2013a |
Serial |
2219 |
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Permanent link to this record |
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Author |
Debora Gil; Agnes Borras; Manuel Ballester; Francesc Carreras; Ruth Aris; Manuel Vazquez; Enric Marti; Ferran Poveda |
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Title |
MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis |
Type |
Conference Article |
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Year |
2011 |
Publication |
14th International Symposium on Applied Sciences in Biomedical and Communication Technologies |
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Abstract |
Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization. |
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Address |
Barcelona; Spain |
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Corporate Author |
Association for Computing Machinery |
Thesis |
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Publisher |
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Place of Publication |
Barcelona, Spain |
Editor |
Association for Computing Machinery |
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Language |
english |
Summary Language |
english |
Original Title |
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Series Editor |
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ISBN |
978-1-4503-0913-4 |
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ISABEL |
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Notes |
IAM |
Approved |
no |
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Call Number |
IAM @ iam @ GGB2011 |
Serial |
1691 |
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Permanent link to this record |
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Author |
Ferran Poveda; Debora Gil ;Albert Andaluz ;Enric Marti |
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Title |
Multiscale Tractography for Representing Heart Muscular Architecture |
Type |
Conference Article |
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Year |
2011 |
Publication |
In MICCAI 2011 Workshop on Computational Diffusion MRI |
Abbreviated Journal |
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Abstract |
Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. Although the muscular architecture of the heart has been debated by countless researchers, the controversy is still alive. Diffusion Tensor MRI, DT-MRI, is a unique imaging technique for computational validation of the muscular structure of the heart. By the complex arrangement of myocites, existing techniques can not provide comprehensive descriptions of the global muscular architecture. In this paper we introduce a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and indicate a global helical organization |
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english |
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CDRMI |
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IAM |
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IAM @ iam @ PGA2011 |
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1681 |
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Author |
Javier Marin; David Geronimo; David Vazquez; Antonio Lopez |
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Title |
Pedestrian Detection: Exploring Virtual Worlds |
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Book Chapter |
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2012 |
Publication |
Handbook of Pattern Recognition: Methods and Application |
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5 |
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145-162 |
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Virtual worlds; Pedestrian Detection; Domain Adaptation |
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Handbook of pattern recognition will include contributions from university educators and active research experts. This Handbook is intended to serve as a basic reference on methods and applications of pattern recognition. The primary aim of this handbook is providing the community of pattern recognition with a readable, easy to understand resource that covers introductory, intermediate and advanced topics with equal clarity. Therefore, the Handbook of pattern recognition can serve equally well as reference resource and as classroom textbook. Contributions cover all methods, techniques and applications of pattern recognition. A tentative list of relevant topics might include: 1- Statistical, structural, syntactic pattern recognition. 2- Neural networks, machine learning, data mining. 3- Discrete geometry, algebraic, graph-based techniques for pattern recognition. 4- Face recognition, Signal analysis, image coding and processing, shape and texture analysis. 5- Document processing, text and graphics recognition, digital libraries. 6- Speech recognition, music analysis, multimedia systems. 7- Natural language analysis, information retrieval. 8- Biometrics, biomedical pattern analysis and information systems. 9- Other scientific, engineering, social and economical applications of pattern recognition. 10- Special hardware architectures, software packages for pattern recognition. |
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iConcept Press |
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978-1-477554-82-1 |
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ADAS |
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ADAS @ adas @ MGV2012 |
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1979 |
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Author |
Javier Marin; David Vazquez; David Geronimo; Antonio Lopez |
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Title |
Learning Appearance in Virtual Scenarios for Pedestrian Detection |
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Conference Article |
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2010 |
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23rd IEEE Conference on Computer Vision and Pattern Recognition |
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137–144 |
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Pedestrian Detection; Domain Adaptation |
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Detecting pedestrians in images is a key functionality to avoid vehicle-to-pedestrian collisions. The most promising detectors rely on appearance-based pedestrian classifiers trained with labelled samples. This paper addresses the following question: can a pedestrian appearance model learnt in virtual scenarios work successfully for pedestrian detection in real images? (Fig. 1). Our experiments suggest a positive answer, which is a new and relevant conclusion for research in pedestrian detection. More specifically, we record training sequences in virtual scenarios and then appearance-based pedestrian classifiers are learnt using HOG and linear SVM. We test such classifiers in a publicly available dataset provided by Daimler AG for pedestrian detection benchmarking. This dataset contains real world images acquired from a moving car. The obtained result is compared with the one given by a classifier learnt using samples coming from real images. The comparison reveals that, although virtual samples were not specially selected, both virtual and real based training give rise to classifiers of similar performance. |
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San Francisco; CA; USA; June 2010 |
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English |
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Learning Appearance in Virtual Scenarios for Pedestrian Detection |
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1063-6919 |
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978-1-4244-6984-0 |
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CVPR |
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ADAS |
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no |
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ADAS @ adas @ MVG2010 |
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1304 |
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Author |
Jiaolong Xu; David Vazquez; Sebastian Ramos; Antonio Lopez; Daniel Ponsa |
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Title |
Adapting a Pedestrian Detector by Boosting LDA Exemplar Classifiers |
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Conference Article |
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2013 |
Publication |
CVPR Workshop on Ground Truth – What is a good dataset? |
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688 - 693 |
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Pedestrian Detection; Domain Adaptation |
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Training vision-based pedestrian detectors using synthetic datasets (virtual world) is a useful technique to collect automatically the training examples with their pixel-wise ground truth. However, as it is often the case, these detectors must operate in real-world images, experiencing a significant drop of their performance. In fact, this effect also occurs among different real-world datasets, i.e. detectors' accuracy drops when the training data (source domain) and the application scenario (target domain) have inherent differences. Therefore, in order to avoid this problem, it is required to adapt the detector trained with synthetic data to operate in the real-world scenario. In this paper, we propose a domain adaptation approach based on boosting LDA exemplar classifiers from both virtual and real worlds. We evaluate our proposal on multiple real-world pedestrian detection datasets. The results show that our method can efficiently adapt the exemplar classifiers from virtual to real world, avoiding drops in average precision over the 15%. |
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Portland; oregon; June 2013 |
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CVPRW |
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ADAS; 600.054; 600.057; 601.217 |
Approved |
yes |
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XVR2013; ADAS @ adas @ xvr2013a |
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2220 |
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