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Antonio Hernandez, Carlo Gatta, Sergio Escalera, Laura Igual, Victoria Martin-Yuste, Manel Sabate, et al. (2012). Accurate coronary centerline extraction, caliber estimation and catheter detection in angiographies. TITB - IEEE Transactions on Information Technology in Biomedicine, 16(6), 1332–1340.
Abstract: Segmentation of coronary arteries in X-Ray angiography is a fundamental tool to evaluate arterial diseases and choose proper coronary treatment. The accurate segmentation of coronary arteries has become an important topic for the registration of different modalities which allows physicians rapid access to different medical imaging information from Computed Tomography (CT) scans or Magnetic Resonance Imaging (MRI). In this paper, we propose an accurate fully automatic algorithm based on Graph-cuts for vessel centerline extraction, caliber estimation, and catheter detection. Vesselness, geodesic paths, and a new multi-scale edgeness map are combined to customize the Graph-cuts approach to the segmentation of tubular structures, by means of a global optimization of the Graph-cuts energy function. Moreover, a novel supervised learning methodology that integrates local and contextual information is proposed for automatic catheter detection. We evaluate the method performance on three datasets coming from different imaging systems. The method performs as good as the expert observer w.r.t. centerline detection and caliber estimation. Moreover, the method discriminates between arteries and catheter with an accuracy of 96.5%, sensitivity of 72%, and precision of 97.4%.
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Josep M. Gonfaus, Theo Gevers, Arjan Gijsenij, Xavier Roca, & Jordi Gonzalez. (2012). Edge Classification using Photo-Geo metric features. In 21st International Conference on Pattern Recognition (pp. 1497–1500).
Abstract: Edges are caused by several imaging cues such as shadow, material and illumination transitions. Classification methods have been proposed which are solely based on photometric information, ignoring geometry to classify the physical nature of edges in images. In this paper, the aim is to present a novel strategy to handle both photometric and geometric information for edge classification. Photometric information is obtained through the use of quasi-invariants while geometric information is derived from the orientation and contrast of edges. Different combination frameworks are compared with a new principled approach that captures both information into the same descriptor. From large scale experiments on different datasets, it is shown that, in addition to photometric information, the geometry of edges is an important visual cue to distinguish between different edge types. It is concluded that by combining both cues the performance improves by more than 7% for shadows and highlights.
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Laura Igual, Joan Carles Soliva, Sergio Escalera, Roger Gimeno, Oscar Vilarroya, & Petia Radeva. (2012). Automatic Brain Caudate Nuclei Segmentation and Classification in Diagnostic of Attention-Deficit/Hyperactivity Disorder. CMIG - Computerized Medical Imaging and Graphics, 36(8), 591–600.
Abstract: We present a fully automatic diagnostic imaging test for Attention-Deficit/Hyperactivity Disorder diagnosis assistance based on previously found evidences of caudate nucleus volumetric abnormalities. The proposed method consists of different steps: a new automatic method for external and internal segmentation of caudate based on Machine Learning methodologies; the definition of a set of new volume relation features, 3D Dissociated Dipoles, used for caudate representation and classification. We separately validate the contributions using real data from a pediatric population and show precise internal caudate segmentation and discrimination power of the diagnostic test, showing significant performance improvements in comparison to other state-of-the-art methods.
Keywords: Automatic caudate segmentation; Attention-Deficit/Hyperactivity Disorder; Diagnostic test; Machine learning; Decision stumps; Dissociated dipoles
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Francesco Ciompi. (2012). Multi-Class Learning for Vessel Characterization in Intravascular Ultrasound (Petia Radeva, & Oriol Pujol, Eds.). Ph.D. thesis, Ediciones Graficas Rey, .
Abstract: In this thesis we tackle the problem of automatic characterization of human coronary vessel in Intravascular Ultrasound (IVUS) image modality. The basis for the whole characterization process is machine learning applied to multi-class problems. In all the presented approaches, the Error-Correcting Output Codes (ECOC) framework is used as central element for the design of multi-class classifiers.
Two main topics are tackled in this thesis. First, the automatic detection of the vessel borders is presented. For this purpose, a novel context-aware classifier for multi-class classification of the vessel morphology is presented, namely ECOC-DRF. Based on ECOC-DRF, the lumen border and the media-adventitia border in IVUS are robustly detected by means of a novel holistic approach, achieving an error comparable with inter-observer variability and with state of the art methods.
The two vessel borders define the atheroma area of the vessel. In this area, tissue characterization is required. For this purpose, we present a framework for automatic plaque characterization by processing both texture in IVUS images and spectral information in raw Radio Frequency data. Furthermore, a novel method for fusing in-vivo and in-vitro IVUS data for plaque characterization is presented, namely pSFFS. The method demonstrates to effectively fuse data generating a classifier that improves the tissue characterization in both in-vitro and in-vivo datasets.
A novel method for automatic video summarization in IVUS sequences is also presented. The method aims to detect the key frames of the sequence, i.e., the frames representative of morphological changes. This novel method represents the basis for video summarization in IVUS as well as the markers for the partition of the vessel into morphological and clinically interesting events.
Finally, multi-class learning based on ECOC is applied to lung tissue characterization in Computed Tomography. The novel proposed approach, based on supervised and unsupervised learning, achieves accurate tissue classification on a large and heterogeneous dataset.
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Antonio Hernandez, Miguel Reyes, Victor Ponce, & Sergio Escalera. (2012). GrabCut-Based Human Segmentation in Video Sequences. SENS - Sensors, 12(11), 15376–15393.
Abstract: In this paper, we present a fully-automatic Spatio-Temporal GrabCut human segmentation methodology that combines tracking and segmentation. GrabCut initialization is performed by a HOG-based subject detection, face detection, and skin color model. Spatial information is included by Mean Shift clustering whereas temporal coherence is considered by the historical of Gaussian Mixture Models. Moreover, full face and pose recovery is obtained by combining human segmentation with Active Appearance Models and Conditional Random Fields. Results over public datasets and in a new Human Limb dataset show a robust segmentation and recovery of both face and pose using the presented methodology.
Keywords: segmentation; human pose recovery; GrabCut; GraphCut; Active Appearance Models; Conditional Random Field
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Arnau Ramisa, David Aldavert, Shrihari Vasudevan, Ricardo Toledo, & Ramon Lopez de Mantaras. (2012). Evaluation of Three Vision Based Object Perception Methods for a Mobile Robot. JIRC - Journal of Intelligent and Robotic Systems, 68(2), 185–208.
Abstract: This paper addresses visual object perception applied to mobile robotics. Being able to perceive household objects in unstructured environments is a key capability in order to make robots suitable to perform complex tasks in home environments. However, finding a solution for this task is daunting: it requires the ability to handle the variability in image formation in a moving camera with tight time constraints. The paper brings to attention some of the issues with applying three state of the art object recognition and detection methods in a mobile robotics scenario, and proposes methods to deal with windowing/segmentation. Thus, this work aims at evaluating the state-of-the-art in object perception in an attempt to develop a lightweight solution for mobile robotics use/research in typical indoor settings.
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Petia Radeva, Michal Drozdzal, Santiago Segui, Laura Igual, Carolina Malagelada, Fernando Azpiroz, et al. (2012). Active labeling: Application to wireless endoscopy analysis. In High Performance Computing and Simulation, International Conference on (pp. 174–181).
Abstract: Today, robust learners trained in a real supervised machine learning application should count with a rich collection of positive and negative examples. Although in many applications, it is not difficult to obtain huge amount of data, labeling those data can be a very expensive process, especially when dealing with data of high variability and complexity. A good example of such cases are data from medical imaging applications where annotating anomalies like tumors, polyps, atherosclerotic plaque or informative frames in wireless endoscopy need highly trained experts. Building a representative set of training data from medical videos (e.g. Wireless Capsule Endoscopy) means that thousands of frames to be labeled by an expert. It is quite normal that data in new videos come different and thus are not represented by the training set. In this paper, we review the main approaches on active learning and illustrate how active learning can help to reduce expert effort in constructing the training sets. We show that applying active learning criteria, the number of human interventions can be significantly reduced. The proposed system allows the annotation of informative/non-informative frames of Wireless Capsule Endoscopy video containing more than 30000 frames each one with less than 100 expert ”clicks”.
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Cristhian Aguilera, Fernando Barrera, Felipe Lumbreras, Angel Sappa, & Ricardo Toledo. (2012). Multispectral Image Feature Points. SENS - Sensors, 12(9), 12661–12672.
Abstract: Far-Infrared and Visible Spectrum images. It allows matching interest points on images of the same scene but acquired in different spectral bands. Initially, points of interest are detected on both images through a SIFT-like based scale space representation. Then, these points are characterized using an Edge Oriented Histogram (EOH) descriptor. Finally, points of interest from multispectral images are matched by finding nearest couples using the information from the descriptor. The provided experimental results and comparisons with similar methods show both the validity of the proposed approach as well as the improvements it offers with respect to the current state-of-the-art.
Keywords: multispectral image descriptor; color and infrared images; feature point descriptor
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Fernando Barrera, Felipe Lumbreras, & Angel Sappa. (2012). Multimodal Stereo Vision System: 3D Data Extraction and Algorithm Evaluation. J-STSP - IEEE Journal of Selected Topics in Signal Processing, 6(5), 437–446.
Abstract: This paper proposes an imaging system for computing sparse depth maps from multispectral images. A special stereo head consisting of an infrared and a color camera defines the proposed multimodal acquisition system. The cameras are rigidly attached so that their image planes are parallel. Details about the calibration and image rectification procedure are provided. Sparse disparity maps are obtained by the combined use of mutual information enriched with gradient information. The proposed approach is evaluated using a Receiver Operating Characteristics curve. Furthermore, a multispectral dataset, color and infrared images, together with their corresponding ground truth disparity maps, is generated and used as a test bed. Experimental results in real outdoor scenarios are provided showing its viability and that the proposed approach is not restricted to a specific domain.
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Cristhian Aguilera, M.Ramos, & Angel Sappa. (2012). Simulated Annealing: A Novel Application of Image Processing in the Wood Area. In Marcos de Sales Guerra Tsuzuki (Ed.), Simulated Annealing – Advances, Applications and Hybridizations (pp. 91–104).
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Pedro Martins, Paulo Carvalho, & Carlo Gatta. (2012). Stable Salient Shapes. In International Conference on Digital Image Computing: Techniques and Applications.
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Jaume Gibert, Ernest Valveny, Horst Bunke, & Alicia Fornes. (2012). On the Correlation of Graph Edit Distance and L1 Distance in the Attribute Statistics Embedding Space. In Structural, Syntactic, and Statistical Pattern Recognition, Joint IAPR International Workshop (Vol. 7626, pp. 135–143). LNCS. Springer-Berlag, Berlin.
Abstract: Graph embeddings in vector spaces aim at assigning a pattern vector to every graph so that the problems of graph classification and clustering can be solved by using data processing algorithms originally developed for statistical feature vectors. An important requirement graph features should fulfil is that they reproduce as much as possible the properties among objects in the graph domain. In particular, it is usually desired that distances between pairs of graphs in the graph domain closely resemble those between their corresponding vectorial representations. In this work, we analyse relations between the edit distance in the graph domain and the L1 distance of the attribute statistics based embedding, for which good classification performance has been reported on various datasets. We show that there is actually a high correlation between the two kinds of distances provided that the corresponding parameter values that account for balancing the weight between node and edge based features are properly selected.
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Simone Balocco, Carlo Gatta, Marina Alberti, Xavier Carrillo, Juan Rigla, & Petia Radeva. (2012). Relation between plaque type, plaque thickness, blood shear stress and plaque stress in coronary arteries assessed by X-ray Angiography and Intravascular Ultrasound. MEDPHYS - Medical Physics, 39(12), 7430–7445.
Abstract: PMID 23231293
PURPOSE:
Atheromatic plaque progression is affected, among others phenomena, by biomechanical, biochemical, and physiological factors. In this paper, the authors introduce a novel framework able to provide both morphological (vessel radius, plaque thickness, and type) and biomechanical (wall shear stress and Von Mises stress) indices of coronary arteries.
METHODS:
First, the approach reconstructs the three-dimensional morphology of the vessel from intravascular ultrasound (IVUS) and Angiographic sequences, requiring minimal user interaction. Then, a computational pipeline allows to automatically assess fluid-dynamic and mechanical indices. Ten coronary arteries are analyzed illustrating the capabilities of the tool and confirming previous technical and clinical observations.
RESULTS:
The relations between the arterial indices obtained by IVUS measurement and simulations have been quantitatively analyzed along the whole surface of the artery, extending the analysis of the coronary arteries shown in previous state of the art studies. Additionally, for the first time in the literature, the framework allows the computation of the membrane stresses using a simplified mechanical model of the arterial wall.
CONCLUSIONS:
Circumferentially (within a given frame), statistical analysis shows an inverse relation between the wall shear stress and the plaque thickness. At the global level (comparing a frame within the entire vessel), it is observed that heavy plaque accumulations are in general calcified and are located in the areas of the vessel having high wall shear stress. Finally, in their experiments the inverse proportionality between fluid and structural stresses is observed.
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Cesar Isaza, Joaquin Salas, & Bogdan Raducanu. (2012). Evaluation of Intrinsic Image Algorithms to Detect the Shadows Cast by Static Objects Outdoors. SENS - Sensors, 12(10), 13333–13348.
Abstract: In some automatic scene analysis applications, the presence of shadows becomes a nuisance that is necessary to deal with. As a consequence, a preliminary stage in many computer vision algorithms is to attenuate their effect. In this paper, we focus our attention on the detection of shadows cast by static objects outdoors, as the scene is viewed for extended periods of time (days, weeks) from a fixed camera and considering daylight intervals where the main source of light is the sun. In this context, we report two contributions. First, we introduce the use of synthetic images for which ground truth can be generated automatically, avoiding the tedious effort of manual annotation. Secondly, we report a novel application of the intrinsic image concept to the automatic detection of shadows cast by static objects in outdoors. We make both a quantitative and a qualitative evaluation of several algorithms based on this image representation. For the quantitative evaluation, we used the synthetic data set, while for the qualitative evaluation we used both data sets. Our experimental results show that the evaluated methods can partially solve the problem of shadow detection.
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Fadi Dornaika, A.Assoum, & Bogdan Raducanu. (2012). Automatic Dimensionality Estimation for Manifold Learning through Optimal Feature Selection. In Structural, Syntactic, and Statistical Pattern Recognition, Joint IAPR International Workshop (Vol. 7626, pp. 575–583). LNCS. Springer Berlin Heidelberg.
Abstract: A very important aspect in manifold learning is represented by automatic estimation of the intrinsic dimensionality. Unfortunately, this problem has received few attention in the literature of manifold learning. In this paper, we argue that feature selection paradigm can be used to the problem of automatic dimensionality estimation. Besides this, it also leads to improved recognition rates. Our approach for optimal feature selection is based on a Genetic Algorithm. As a case study for manifold learning, we have considered Laplacian Eigenmaps (LE) and Locally Linear Embedding (LLE). The effectiveness of the proposed framework was tested on the face recognition problem. Extensive experiments carried out on ORL, UMIST, Yale, and Extended Yale face data sets confirmed our hypothesis.
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