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Fernando Vilariño, & Petia Radeva. (2002). Patch-Optimized Discriminant Active Contours for Medical Image Segmentation. In Iberoamerican Conference on Artificial Intelligence. Springer Verlag.
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Fernando Vilariño. (2006). "A Machine Learning Approach for Intestinal Motility Assessment with Capsule Endoscopy " (Petia Radeva, Ed.). Ph.D. thesis, , .
Abstract: Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions obtained by labelling all the motility events present in a video provided by a capsule with a wireless micro-camera, which is ingested by the patient. However, the visual analysis of these video sequences presents several im- portant drawbacks, mainly related to both the large amount of time needed for the visualization process, and the low prevalence of intestinal contractions in video.
In this work we propose a machine learning system to automatically detect the intestinal contractions in video capsule endoscopy, driving a very useful but not fea- sible clinical routine into a feasible clinical procedure. Our proposal is divided into two different parts: The first part tackles the problem of the automatic detection of phasic contractions in capsule endoscopy videos. Phasic contractions are dynamic events spanning about 4-5 seconds, which show visual patterns with a high variability. Our proposal is based on a sequential design which involves the analysis of textural, color and blob features with powerful classifiers such as SVM. This approach appears to cope with two basic aims: the reduction of the imbalance rate of the data set, and the modular construction of the system, which adds the capability of including domain knowledge as new stages in the cascade. The second part of the current work tackles the problem of the automatic detection of tonic contractions. Tonic contrac- tions manifest in capsule endoscopy as a sustained pattern of the folds and wrinkles of the intestine, which may be prolonged for an undetermined span of time. Our proposal is based on the analysis of the wrinkle patterns, presenting a comparative study of diverse features and classification methods, and providing a set of appro- priate descriptors for their characterization. We provide a detailed analysis of the performance achieved by our system both in a qualitative and a quantitative way.
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Robert Benavente, Laura Igual, & Fernando Vilariño. (2008)." Current Challenges in Computer Vision" .
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Jorge Bernal, Fernando Vilariño, & F. Javier Sanchez. (2010). "Feature Detectors and Feature Descriptors: Where We Are Now " (Vol. 154).
Abstract: Feature Detection and Feature Description are clearly nowadays topics. Many Computer Vision applications rely on the use of several of these techniques in order to extract the most significant aspects of an image so they can help in some tasks such as image retrieval, image registration, object recognition, object categorization and texture classification, among others. In this paper we define what Feature Detection and Description are and then we present an extensive collection of several methods in order to show the different techniques that are being used right now. The aim of this report is to provide a glimpse of what is being used currently in these fields and to serve as a starting point for future endeavours.
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2010). "Reduction of Pattern Search Area in Colonoscopy Images by Merging Non-Informative Regions " In 28th Congreso Anual de la Sociedad Española de Ingeniería Biomédica.
Abstract: One of the first usual steps in pattern recognition schemas is image segmentation, in order to reduce the dimensionality of the problem and manage smaller quantity of data. In our case as we are pursuing real-time colon cancer polyp detection, this step is crucial. In this paper we present a non-informative region estimation algorithm that will let us discard some parts of the image where we will not expect to find colon cancer polyps. The performance of our approach will be measured in terms of both non-informative areas elimination and polyps’ areas preserving. The results obtained show the importance of having correct non- informative region estimation in order to fasten the whole recognition process.
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Debora Gil, Petia Radeva, & Fernando Vilariño. (2003). "Anisotropic Contour Completion " In Proceedings of the IEEE International Conference on Image Processing. Barcelona, Spain.
Abstract: In this paper we introduce a novel application of the diffusion tensor for anisotropic image processing. The Anisotropic Contour Completion (ACC) we suggest consists in extending the characteristic function of the open curve by means of a degenerated diffusion tensor that prevents any diffusion in the normal direction. We show that ACC is equivalent to a dilation with a continuous elliptic structural element that takes into account the local orientation of the contours to be closed. Experiments on contours extracted from real images show that ACC produces shapes able to adapt to any curve in an active contour framework. 1.
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Fernando Vilariño, & Enric Marti. (2008)." New didactic techniques in the EHES applying mobile technologies" .
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Onur Ferhat, & Fernando Vilariño. (2013). "A Cheap Portable Eye-Tracker Solution for Common Setups " In 17th European Conference on Eye Movements.
Abstract: We analyze the feasibility of a cheap eye-tracker where the hardware consists of a single webcam and a Raspberry Pi device. Our aim is to discover the limits of such a system and to see whether it provides an acceptable performance. We base our work on the open source Opengazer (Zielinski, 2013) and we propose several improvements to create a robust, real-time system. After assessing the accuracy of our eye-tracker in elaborated experiments involving 18 subjects under 4 different system setups, we developed a simple game to see how it performs in practice and we also installed it on a Raspberry Pi to create a portable stand-alone eye-tracker which achieves 1.62° horizontal accuracy with 3 fps refresh rate for a building cost of 70 Euros.
Keywords: Low cost; eye-tracker; software; webcam; Raspberry Pi
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Stefan Ameling, Stephan Wirth, Dietrich Paulus, Gerard Lacey, & Fernando Vilariño. (2009)." Texture-based Polyp Detection in Colonoscopy" . Proc. BILDVERARBEITUNG FÜR DIE MEDIZIN, .
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Fernando Vilariño, & Gerard Lacey. (2009)." QUALITY ASSESSMENT IN COLONOSCOPY New challenges through computer vision-based systems" In in Proc. 3rd International Conference on Biomedical Electronics and Devices.
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Joan M. Nuñez, Jorge Bernal, Miquel Ferrer, & Fernando Vilariño. (2014). "Impact of Keypoint Detection on Graph-based Characterization of Blood Vessels in Colonoscopy Videos " In CARE workshop.
Abstract: We explore the potential of the use of blood vessels as anatomical landmarks for developing image registration methods in colonoscopy images. An unequivocal representation of blood vessels could be used to guide follow-up methods to track lesions over different interventions. We propose a graph-based representation to characterize network structures, such as blood vessels, based on the use of intersections and endpoints. We present a study consisting of the assessment of the minimal performance a keypoint detector should achieve so that the structure can still be recognized. Experimental results prove that, even by achieving a loss of 35% of the keypoints, the descriptive power of the associated graphs to the vessel pattern is still high enough to recognize blood vessels.
Keywords: Colonoscopy; Graph Matching; Biometrics; Vessel; Intersection
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Onur Ferhat, Arcadi Llanza, & Fernando Vilariño. (2015)." Gaze interaction for multi-display systems using natural light eye-tracker" In 2nd International Workshop on Solutions for Automatic Gaze Data Analysis.
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Carlos David Martinez Hinarejos, Josep Llados, Alicia Fornes, Francisco Casacuberta, Lluis de Las Heras, Joan Mas, et al. (2016). "Context, multimodality, and user collaboration in handwritten text processing: the CoMUN-HaT project " In 3rd IberSPEECH.
Abstract: Processing of handwritten documents is a task that is of wide interest for many
purposes, such as those related to preserve cultural heritage. Handwritten text recognition techniques have been successfully applied during the last decade to obtain transcriptions of handwritten documents, and keyword spotting techniques have been applied for searching specific terms in image collections of handwritten documents. However, results on transcription and indexing are far from perfect. In this framework, the use of new data sources arises as a new paradigm that will allow for a better transcription and indexing of handwritten documents. Three main different data sources could be considered: context of the document (style, writer, historical time, topics,. . . ), multimodal data (representations of the document in a different modality, such as the speech signal of the dictation of the text), and user feedback (corrections, amendments,. . . ). The CoMUN-HaT project aims at the integration of these different data sources into the transcription and indexing task for handwritten documents: the use of context derived from the analysis of the documents, how multimodality can aid the recognition process to obtain more accurate transcriptions (including transcription in a modern version of the language), and integration into a userin-the-loop assisted text transcription framework. This will be reflected in the construction of a transcription and indexing platform that can be used by both professional and nonprofessional users, contributing to crowd-sourcing activities to preserve cultural heritage and to obtain an accessible version of the involved corpus.
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Gloria Fernandez Esparrach, Jorge Bernal, Cristina Rodriguez de Miguel, Debora Gil, Fernando Vilariño, Henry Cordova, et al. (2015). "Colonic polyps are correctly identified by a computer vision method using wm-dova energy maps " In Proceedings of 23 United European- UEG Week 2015.
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Dan Norton, Fernando Vilariño, & Onur Ferhat. (2015)." Memory Field – Creative Engagement in Digital Collections" In Internet Librarian International Conference.
Abstract: “Memory Fields” is a trans-disciplinary project aiming at the (re)valorisation of digital collections.Its main deliverable is an interface for a dual screen installation, used to access and mix the public library digital collections. The collections being used in this case are a collection of digitised posters from the Spanish Civil War, belonging to the Arxiu General de Catalunya, and a collection of field recordings made by Dan Norton. The system generates visualisations, and the images and sounds are mixed together using narrative primitives of video dj. Users contribute to the digital collections by adding personal memories and observations. The comments and recollections appear as flowers growing in a “memory field” and memories remain public in a Twitter feed (@Memoryfields).
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Fernando Vilariño, & Dimosthenis Karatzas. (2015)." The Library Living Lab" In Open Living Lab Days.
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Fernando Vilariño, Dimosthenis Karatzas, Marcos Catalan, & Alberto Valcarcel. (2015)." An horizon for the Public Library as a place for innovation and creativity. The Library Living Lab in Volpelleres" In The White Book on Public Library Network from Diputació de Barcelona.
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Fernando Vilariño. (2015)." Computer Vision and Performing Arts" In Korean Scholars of Marketing Science.
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Fernando Vilariño, Dan Norton, & Onur Ferhat. (2015)." Memory Fields: DJs in the Library" In 21 st Symposium of Electronic Arts.
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Fernando Vilariño, Dan Norton, & Onur Ferhat. (2016)." The Eye Doesn't Click – Eyetracking and Digital Content Interaction" In 4S/EASST Conference.
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Fernando Vilariño. (2016)." Giving Value to digital collections in the Public Library" In Librarian 2020.
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Fernando Vilariño, & Dimosthenis Karatzas. (2016)." A Living Lab approach for Citizen Science in Libraries" In 1st International ECSA Conference.
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Fernando Vilariño. (2016)." Dissemination, creation and education from archives: Case study of the collection of Digitized Visual Poems from Joan Brossa Foundation" In International Workshop on Poetry: Archives, Poetries and Receptions.
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Fernando Vilariño, & Dan Norton. (2017)." Using mutimedia tools to spread poetry collections" In Internet librarian International Conference.
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Fernando Vilariño. (2017)." Citizen experience as a powerful communication tool: Open Innovation and the role of Living Labs in EU" In European Conference of Science Journalists.
Abstract: The Open Innovation 2.0 model spearheaded by the European Commission introduces conceptual changes in how innovation processes should be developed. The notion of an innovation ecosystem, and the active participation of the citizens (and all the different actors of the quadruple helix) in innovation processes, opens up new channels for scientific communication, where the citizens (and all actors) can be naturally reached and facilitate the spread of the scientific message in their communities. Unleashing the power of such mechanisms, while maintaining control over the scientific communication done through such channels presents an opportunity and a challenge at the same time.
This workshop will look into key concepts that the Open Innovation 2.0 EU model introduces, and what new opportunities for communication they bring about. Specifically, we will focus on Living Labs, as a key instrument for implementing this innovation model at the regional level, and their potential in creating scientific dissemination spaces.
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Fernando Vilariño. (2017)." Bringing and keeping all the stakeholders together: creating a catalog of models of governance for innovation" .
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Fernando Vilariño, Dimosthenis Karatzas, & Alberto Valcarce. (2018)." Libraries as New Innovation Hubs: The Library Living Lab" In 30th ISPIM Innovation Conference.
Abstract: Libraries are in deep transformation both in EU and around the world, and they are thriving within a great window of opportunity for innovation. In this paper, we show how the Library Living Lab in Barcelona participated of this changing scenario and contributed to create the Bibliolab program, where more than 200 public libraries give voice to their users in a global user-centric innovation initiative, using technology as enabling factor. The Library Living Lab is a real 4-helix implementation where Universities, Research Centers, Public Administration, Companies and the Neighbors are joint together to explore how technology transforms the cultural experience of people. This case is an example of scalability and provides reference tools for policy making, sustainability, user engage methodologies and governance. We provide specific examples of new prototypes and services that help to understand how to redefine the role of the Library as a real hub for social innovation.
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Fernando Vilariño. (2019)." Library Living Lab, Numérisation 3D des chapiteaux du cloître de Saint-Cugat : des citoyens co- créant le nouveau patrimoine culturel numérique" In Intersectorialité et approche Living Labs. Entretiens Jacques-Cartier.
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Fernando Vilariño. (2019)." Public Libraries Exploring how technology transforms the cultural experience of people" In Workshop on Social Impact of AI. Open Living Lab Days Conference..
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Fernando Vilariño. (2020)." Unveiling the Social Impact of AI" In Workshop at Digital Living Lab Days Conference.
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Fernando Vilariño. (2019)." 3D Scanning of Capitals at Library Living Lab" .
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Rozenn Dhayot, Fernando Vilariño, & Gerard Lacey. (2008). "Improving the Quality of Color Colonoscopy Videos " . EURASIP Journal on Image and Video Processing, 139429(1), 1–9.
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Onur Ferhat, Fernando Vilariño, & F. Javier Sanchez. (2014). A cheap portable eye-tracker solution for common setups. Journal of Eye Movement Research, 7(3), 1–10.
Abstract: We analyze the feasibility of a cheap eye-tracker where the hardware consists of a single webcam and a Raspberry Pi device. Our aim is to discover the limits of such a system and to see whether it provides an acceptable performance. We base our work on the open source Opengazer (Zielinski, 2013) and we propose several improvements to create a robust, real-time system which can work on a computer with 30Hz sampling rate. After assessing the accuracy of our eye-tracker in elaborated experiments involving 12 subjects under 4 different system setups, we install it on a Raspberry Pi to create a portable stand-alone eye-tracker which achieves 1.42° horizontal accuracy with 3Hz refresh rate for a building cost of 70 Euros.
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Helena Muñoz, Fernando Vilariño, & Dimosthenis Karatzas. (2019). "Eye-Movements During Information Extraction from Administrative Documents " In International Conference on Document Analysis and Recognition Workshops (pp. 6–9).
Abstract: A key aspect of digital mailroom processes is the extraction of relevant information from administrative documents. More often than not, the extraction process cannot be fully automated, and there is instead an important amount of manual intervention. In this work we study the human process of information extraction from invoice document images. We explore whether the gaze of human annotators during an manual information extraction process could be exploited towards reducing the manual effort and automating the process. To this end, we perform an eye-tracking experiment replicating real-life interfaces for information extraction. Through this pilot study we demonstrate that relevant areas in the document can be identified reliably through automatic fixation classification, and the obtained models generalize well to new subjects. Our findings indicate that it is in principle possible to integrate the human in the document image analysis loop, making use of the scanpath to automate the extraction process or verify extracted information.
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Fernando Vilariño, Panagiota Spyridonos, Jordi Vitria, Fernando Azpiroz, & Petia Radeva. (2006). "Cascade analysis for intestinal contraction detection " In 20th International Congress and exhibition Computer Assisted Radiology and Surgery (pp. 9–10).
Abstract: In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.
Keywords: intestine video analysis, anisotropic features, support vector machine, cascade of classifiers
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Jorge Bernal, Joan M. Nuñez, F. Javier Sanchez, & Fernando Vilariño. (2014). "Polyp Segmentation Method in Colonoscopy Videos by means of MSA-DOVA Energy Maps Calculation " In 3rd MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging (Vol. 8680, pp. 41–49).
Abstract: In this paper we present a novel polyp region segmentation method for colonoscopy videos. Our method uses valley information associated to polyp boundaries in order to provide an initial segmentation. This first segmentation is refined to eliminate boundary discontinuities caused by image artifacts or other elements of the scene. Experimental results over a publicly annotated database show that our method outperforms both general and specific segmentation methods by providing more accurate regions rich in polyp content. We also prove how image preprocessing is needed to improve final polyp region segmentation.
Keywords: Image segmentation; Polyps; Colonoscopy; Valley information; Energy maps
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). "Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach " In K. Djemal (Ed.), 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems (pp. 62–71). SciTePress.
Abstract: In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction.
Keywords: Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time.
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). "Depth of Valleys Accumulation Algorithm for Object Detection " In 14th Congrès Català en Intel·ligencia Artificial (Vol. 1, pp. 71–80).
Abstract: This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.
Keywords: Object Recognition, Object Region Identification, Image Analysis, Image Processing
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). "Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy " In In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging (Vol. 6668, pp. 76–83). Lecture Notes in Computer Science. Springer Link.
Abstract: This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information.
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Fernando Vilariño, Debora Gil, & Petia Radeva. (2004). "A Novel FLDA Formulation for Numerical Stability Analysis " In P. R. and I. A. J. Vitrià (Ed.), Recent Advances in Artificial Intelligence Research and Development (Vol. 113, pp. 77–84). IOS Press.
Abstract: Fisher Linear Discriminant Analysis (FLDA) is one of the most popular techniques used in classification applying dimensional reduction. The numerical scheme involves the inversion of the within-class scatter matrix, which makes FLDA potentially ill-conditioned when it becomes singular. In this paper we present a novel explicit formulation of FLDA in terms of the eccentricity ratio and eigenvector orientations of the within-class scatter matrix. An analysis of this function will characterize those situations where FLDA response is not reliable because of numerical instability. This can solve common situations of poor classification performance in computer vision.
Keywords: Supervised Learning; Linear Discriminant Analysis; Numerical Stability; Computer Vision
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Gloria Fernandez Esparrach, Jorge Bernal, Cristina Rodriguez de Miguel, Debora Gil, Fernando Vilariño, Henry Cordova, et al. (2016)." Utilidad de la visión por computador para la localización de pólipos pequeños y planos" In XIX Reunión Nacional de la Asociación Española de Gastroenterología, Gastroenterology Hepatology (Vol. 39, 94).
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Jorge Bernal, F. Javier Sanchez, Gloria Fernandez Esparrach, Debora Gil, Cristina Rodriguez de Miguel, & Fernando Vilariño. (2015). "WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians " . Computerized Medical Imaging and Graphics, 43, 99–111.
Abstract: We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice.
Keywords: Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). "A Region Segmentation Method for Colonoscopy Images Using a Model of Polyp Appearance " In Mario João and Hernández J. and S. Vitrià (Ed.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 134–143 ). Lecture Notes in Computer Science.
Abstract: This work aims at the segmentation of colonoscopy images into a minimum number of informative regions. Our method performs in a way such, if a polyp is present in the image, it will be exclusively and totally contained in a single region. This result can be used in later stages to classify regions as polyp-containing candidates. The output of the algorithm also defines which regions can be considered as non-informative. The algorithm starts with a high number of initial regions and merges them taking into account the model of polyp appearance obtained from available data. The results show that our segmentations of polyp regions are more accurate than state-of-the-art methods.
Keywords: Colonoscopy, Polyp Detection, Region Merging, Region Segmentation.
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Panagiota Spyridonos, Fernando Vilariño, Jordi Vitria, Fernando Azpiroz, & Petia Radeva. (2006). "Anisotropic Feature Extraction from Endoluminal Images for Detection of Intestinal Contractions " In and J. Sporring M. N. R. Larsen (Ed.), 9th International Conference on Medical Image Computing and Computer–Assisted Intervention (Vol. 4191, 161–168). Berlin Heidelberg: Springer Verlag.
Abstract: Wireless endoscopy is a very recent and at the same time unique technique allowing to visualize and study the occurrence of con- tractions and to analyze the intestine motility. Feature extraction is es- sential for getting efficient patterns to detect contractions in wireless video endoscopy of small intestine. We propose a novel method based on anisotropic image filtering and efficient statistical classification of con- traction features. In particular, we apply the image gradient tensor for mining informative skeletons from the original image and a sequence of descriptors for capturing the characteristic pattern of contractions. Fea- tures extracted from the endoluminal images were evaluated in terms of their discriminatory ability in correct classifying images as either belong- ing to contractions or not. Classification was performed by means of a support vector machine classifier with a radial basis function kernel. Our classification rates gave sensitivity of the order of 90.84% and specificity of the order of 94.43% respectively. These preliminary results highlight the high efficiency of the selected descriptors and support the feasibility of the proposed method in assisting the automatic detection and analysis of contractions.
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Joan M. Nuñez, Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2013). "Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization " In Proceedings of the International Conference on Computer Vision Theory and Applications (Vol. 1, pp. 162–171). SciTePress.
Abstract: This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization
algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance.
Keywords: Colonoscopy; Blood vessel; Linear features; Valley detection
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Fernando Vilariño, Panagiota Spyridonos, Jordi Vitria, Carolina Malagelada, & Petia Radeva. (2006). "Linear Radial Patterns Characterization for Automatic Detection of Tonic Intestinal Contractions " In .F. Mart ́ınez-Trinidad et al (Ed.), 11th Iberoamerican Congress on Pattern Recognition (Vol. 4225, 178–187). Berlin Heidelberg: Springer Verlag.
Abstract: This work tackles the categorization of general linear radial patterns by means of the valleys and ridges detection and the use of descriptors of directional information, which are provided by steerable filters in different regions of the image. We successfully apply our proposal in the specific case of automatic detection of tonic contractions in video capsule endoscopy, which represent a paradigmatic example of linear radial patterns.
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Fernando Vilariño, Panagiota Spyridonos, Jordi Vitria, Carolina Malagelada, & Petia Radeva. (2006). "A Machine Learning framework using SOMs: Applications in the Intestinal Motility Assessment " In J.P. Martinez–Trinidad et al (Ed.), 11th Iberoamerican Congress on Pattern Recognition (Vol. 4225, 188–197). Berlin-Heidelberg: Springer Verlag.
Abstract: Small Bowel Motility Assessment by means of Wireless Capsule Video Endoscopy constitutes a novel clinical methodology in which a capsule with a micro-camera attached to it is swallowed by the patient, emitting a RF signal which is recorded as a video of its trip throughout the gut. In order to overcome the main drawbacks associated with this technique -mainly related to the large amount of visualization time required-, our efforts have been focused on the development of a machine learning system, built up in sequential stages, which provides the specialists with the useful part of the video, rejecting those parts not valid for analysis. We successfully used Self Organized Maps in a general semi-supervised framework with the aim of tackling the different learning stages of our system. The analysis of the diverse types of images and the automatic detection of intestinal contractions is performed under the perspective of intestinal motility assessment in a clinical environment.
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Fernando Vilariño, & Petia Radeva. (2003)." Cardiac Segmentation with Discriminant Active Contours" (211–217). IOS Press.
Abstract: Dynamic tracking of heart moving is one relevant target in medical imag- ing and can be helpful for analyzing heart dynamics in the study of several cardiac diseases. For this aim, a previous segmentation problem of such structures is stated, based on certain relevant features (like edges or intensity levels, textures, etc.) Clas- sical active models have been used, but they fail when overlapping structures or not well-defined contours are present. Automatic feature learning systems may be a pow- erful tool. Discriminant active contours present optimal results in this kind of problem. They are a kind of deformable models that converge to an optimal object segmenta- tion that dynamically adapts to the object contour. The feature space is designed from a filter bank in order to guarantee the search and learning of the set of relevant fea- tures for optimal classification on each part of the object. Tracking of target evolution is obtained through the whole set of images, using information from the actual and previous stages. Feedback systems are implemented to guarantee the minimum well- separable classification set in each segmentation step. Our implementation has been proved with several series of Magnetic Resonance with improved results in segmenta- tion in comparison to previous methods.
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Jorge Bernal, Fernando Vilariño, F. Javier Sanchez, M. Arnold, Anarta Ghosh, & Gerard Lacey. (2014). "Experts vs Novices: Applying Eye-tracking Methodologies in Colonoscopy Video Screening for Polyp Search " In 2014 Symposium on Eye Tracking Research and Applications (pp. 223–226).
Abstract: We present in this paper a novel study aiming at identifying the differences in visual search patterns between physicians of diverse levels of expertise during the screening of colonoscopy videos. Physicians were clustered into two groups -experts and novices- according to the number of procedures performed, and fixations were captured by an eye-tracker device during the task of polyp search in different video sequences. These fixations were integrated into heat maps, one for each cluster. The obtained maps were validated over a ground truth consisting of a mask of the polyp, and the comparison between experts and novices was performed by using metrics such as reaction time, dwelling time and energy concentration ratio. Experimental results show a statistically significant difference between experts and novices, and the obtained maps show to be a useful tool for the characterisation of the behaviour of each group.
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Fernando Vilariño, Panagiota Spyridonos, Fosca De Iorio, Jordi Vitria, Fernando Azpiroz, & Petia Radeva. (2010). "Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions " . IEEE Transactions on Medical Imaging, 29(2), 246–259.
Abstract: Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions.
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