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	Author	Santiago Segui; Oriol Pujol; Jordi Vitria
	Title	Learning to count with deep object features			Type	Conference Article
	Year	2015	Publication	Deep Vision: Deep Learning in Computer Vision, CVPR 2015 Workshop	Abbreviated Journal
	Volume		Issue		Pages	90-96
	Keywords
	Abstract	Learning to count is a learning strategy that has been recently proposed in the literature for dealing with problems where estimating the number of object instances in a scene is the final objective. In this framework, the task of learning to detect and localize individual object instances is seen as a harder task that can be evaded by casting the problem as that of computing a regression value from hand-crafted image features. In this paper we explore the features that are learned when training a counting convolutional neural network in order to understand their underlying representation. To this end we define a counting problem for MNIST data and show that the internal representation of the network is able to classify digits in spite of the fact that no direct supervision was provided for them during training. We also present preliminary results about a deep network that is able to count the number of pedestrians in a scene.
	Address	Boston; USA; June 2015
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	CVPRW
	Notes	MILAB; HuPBA; OR;MV			Approved	no
	Call Number	Admin @ si @ SPV2015			Serial	2636
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	Author	Santiago Segui; Michal Drozdzal; Petia Radeva; Jordi Vitria
	Title	Severe Motility Diagnosis using WCE			Type	Conference Article
	Year	2010	Publication	Medical Image Computing in Catalunya: Graduate Student Workshop	Abbreviated Journal
	Volume		Issue		Pages	45–46
	Keywords
	Abstract
	Address	Girona, Spain
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MICCAT
	Notes	OR;MILAB;MV			Approved	no
	Call Number	BCNPCL @ bcnpcl @ SDR2010			Serial	1478
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	Author	Santiago Segui; Michal Drozdzal; Petia Radeva; Jordi Vitria
	Title	An Integrated Approach to Contextual Face Detection			Type	Conference Article
	Year	2012	Publication	1st International Conference on Pattern Recognition Applications and Methods	Abbreviated Journal
	Volume		Issue		Pages	143-150
	Keywords
	Abstract	Face detection is, in general, based on content-based detectors. Nevertheless, the face is a non-rigid object with well defined relations with respect to the human body parts. In this paper, we propose to take benefit of the context information in order to improve content-based face detections. We propose a novel framework for integrating multiple content- and context-based detectors in a discriminative way. Moreover, we develop an integrated scoring procedure that measures the ’faceness’ of each hypothesis and is used to discriminate the detection results. Our approach detects a higher rate of faces while minimizing the number of false detections, giving an average increase of more than 10% in average precision when comparing it to state-of-the art face detectors
	Address	Vilamoura, Algarve, Portugal
	Corporate Author				Thesis
	Publisher	Springer	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ICPRAM
	Notes	MILAB; OR;MV			Approved	no
	Call Number	Admin @ si @ SDR2012			Serial	1895
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	Author	Santiago Segui; Michal Drozdzal; Guillem Pascual; Petia Radeva; Carolina Malagelada; Fernando Azpiroz; Jordi Vitria
	Title	Generic Feature Learning for Wireless Capsule Endoscopy Analysis			Type	Journal Article
	Year	2016	Publication	Computers in Biology and Medicine	Abbreviated Journal	CBM
	Volume	79	Issue		Pages	163-172
	Keywords	Wireless capsule endoscopy; Deep learning; Feature learning; Motility analysis
	Abstract	The interpretation and analysis of wireless capsule endoscopy (WCE) recordings is a complex task which requires sophisticated computer aided decision (CAD) systems to help physicians with video screening and, finally, with the diagnosis. Most CAD systems used in capsule endoscopy share a common system design, but use very different image and video representations. As a result, each time a new clinical application of WCE appears, a new CAD system has to be designed from the scratch. This makes the design of new CAD systems very time consuming. Therefore, in this paper we introduce a system for small intestine motility characterization, based on Deep Convolutional Neural Networks, which circumvents the laborious step of designing specific features for individual motility events. Experimental results show the superiority of the learned features over alternative classifiers constructed using state-of-the-art handcrafted features. In particular, it reaches a mean classification accuracy of 96% for six intestinal motility events, outperforming the other classifiers by a large margin (a 14% relative performance increase).
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	OR; MILAB;MV;			Approved	no
	Call Number	Admin @ si @ SDP2016			Serial	2836
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	Author	Santiago Segui; Michal Drozdzal; Fernando Vilariño; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria
	Title	Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy			Type	Journal Article
	Year	2012	Publication	IEEE Transactions on Information Technology in Biomedicine	Abbreviated Journal	TITB
	Volume	16	Issue	6	Pages	1341-1352
	Keywords
	Abstract	Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1089-7771	ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MILAB; MV; OR;SIAI			Approved	no
	Call Number	Admin @ si @ SDV2012			Serial	2124
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	Author	Santiago Segui; Michal Drozdzal; Ekaterina Zaytseva; Fernando Azpiroz; Petia Radeva; Jordi Vitria
	Title	Detection of wrinkle frames in endoluminal videos using betweenness centrality measures for images			Type	Journal Article
	Year	2014	Publication	IEEE Transactions on Information Technology in Biomedicine	Abbreviated Journal	TITB
	Volume	18	Issue	6	Pages	1831-1838
	Keywords	Wireless Capsule Endoscopy; Small Bowel Motility Dysfunction; Contraction Detection; Structured Prediction; Betweenness Centrality
	Abstract	Intestinal contractions are one of the most important events to diagnose motility pathologies of the small intestine. When visualized by wireless capsule endoscopy (WCE), the sequence of frames that represents a contraction is characterized by a clear wrinkle structure in the central frames that corresponds to the folding of the intestinal wall. In this paper we present a new method to robustly detect wrinkle frames in full WCE videos by using a new mid-level image descriptor that is based on a centrality measure proposed for graphs. We present an extended validation, carried out in a very large database, that shows that the proposed method achieves state of the art performance for this task.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	OR; MILAB; 600.046;MV			Approved	no
	Call Number	Admin @ si @ SDZ2014			Serial	2385
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	Author	Santiago Segui; Michal Drozdzal; Ekaterina Zaytseva; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria
	Title	A new image centrality descriptor for wrinkle frame detection in WCE videos			Type	Conference Article
	Year	2013	Publication	13th IAPR Conference on Machine Vision Applications	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Small bowel motility dysfunctions are a widespread functional disorder characterized by abdominal pain and altered bowel habits in the absence of specific and unique organic pathology. Current methods of diagnosis are complex and can only be conducted at some highly specialized referral centers. Wireless Video Capsule Endoscopy (WCE) could be an interesting diagnostic alternative that presents excellent clinical advantages, since it is non-invasive and can be conducted by non specialists. The purpose of this work is to present a new method for the detection of wrinkle frames in WCE, a critical characteristic to detect one of the main motility events: contractions. The method goes beyond the use of one of the classical image feature, the Histogram
	Address	Kyoto; Japan; May 2013
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MVA
	Notes	OR; MILAB; 600.046;MV			Approved	no
	Call Number	Admin @ si @ SDZ2013			Serial	2239
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	Author	Santiago Segui; Laura Igual; Petia Radeva; C. Malagelada; Fernando Azpiroz; Jordi Vitria
	Title	A Semi-Supervised Learning Method for Motility Disease Diagnostic			Type	Book Chapter
	Year	2007	Publication	Progress in Pattern Recognition, Image Analysis and Applications, 12th Iberoamerican Congress on Pattern (CIARP 2007), LCNS 4756:773–782, ISBN 978–3–540–76724–4	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	OR;MILAB;MV			Approved	no
	Call Number	BCNPCL @ bcnpcl @ SIR2007b			Serial	897
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	Author	Santiago Segui; Laura Igual; Jordi Vitria
	Title	Weighted Bagging for Graph based One-Class Classifiers			Type	Conference Article
	Year	2010	Publication	9th International Workshop on Multiple Classifier Systems	Abbreviated Journal
	Volume	5997	Issue		Pages	1-10
	Keywords
	Abstract	Most conventional learning algorithms require both positive and negative training data for achieving accurate classification results. However, the problem of learning classifiers from only positive data arises in many applications where negative data are too costly, difficult to obtain, or not available at all. Minimum Spanning Tree Class Descriptor (MSTCD) was presented as a method that achieves better accuracies than other one-class classifiers in high dimensional data. However, the presence of outliers in the target class severely harms the performance of this classifier. In this paper we propose two bagging strategies for MSTCD that reduce the influence of outliers in training data. We show the improved performance on both real and artificially contaminated data.
	Address	Cairo, Egypt
	Corporate Author				Thesis
	Publisher	Springer Berlin Heidelberg	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN	0302-9743	ISBN	978-3-642-12126-5	Medium
	Area		Expedition		Conference	MCS
	Notes	MILAB;OR;MV			Approved	no
	Call Number	BCNPCL @ bcnpcl @ SIV2010			Serial	1284
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	Author	Santiago Segui; Laura Igual; Jordi Vitria
	Title	Bagged One Class Classifiers in the Presence of Outliers			Type	Journal Article
	Year	2013	Publication	International Journal of Pattern Recognition and Artificial Intelligence	Abbreviated Journal	IJPRAI
	Volume	27	Issue	5	Pages	1350014-1350035
	Keywords	One-class Classifier; Ensemble Methods; Bagging and Outliers
	Abstract	The problem of training classifiers only with target data arises in many applications where non-target data are too costly, difficult to obtain, or not available at all. Several one-class classification methods have been presented to solve this problem, but most of the methods are highly sensitive to the presence of outliers in the target class. Ensemble methods have therefore been proposed as a powerful way to improve the classification performance of binary/multi-class learning algorithms by introducing diversity into classifiers. However, their application to one-class classification has been rather limited. In this paper, we present a new ensemble method based on a non-parametric weighted bagging strategy for one-class classification, to improve accuracy in the presence of outliers. While the standard bagging strategy assumes a uniform data distribution, the method we propose here estimates a probability density based on a forest structure of the data. This assumption allows the estimation of data distribution from the computation of simple univariate and bivariate kernel densities. Experiments using original and noisy versions of 20 different datasets show that bagging ensemble methods applied to different one-class classifiers outperform base one-class classification methods. Moreover, we show that, in noisy versions of the datasets, the non-parametric weighted bagging strategy we propose outperforms the classical bagging strategy in a statistically significant way.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	OR; 600.046;MV			Approved	no
	Call Number	Admin @ si @ SIV2013			Serial	2256
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	Author	Santiago Segui; Laura Igual; Fernando Vilariño; Petia Radeva; C. Malagelada; Fernando Azpiroz; Jordi Vitria
	Title	Diagnostic System for Intestinal Motility Disfunctions Using Video Capsule Endoscopy			Type	Book Chapter
	Year	2008	Publication	Computer Vision Systems. 6th International	Abbreviated Journal
	Volume	5008	Issue		Pages	251–260
	Keywords
	Abstract	Wireless Video Capsule Endoscopy is a clinical technique consisting of the analysis of images from the intestine which are pro- vided by an ingestible device with a camera attached to it. In this paper we propose an automatic system to diagnose severe intestinal motility disfunctions using the video endoscopy data. The system is based on the application of computer vision techniques within a machine learn- ing framework in order to obtain the characterization of diverse motil- ity events from video sequences. We present experimental results that demonstrate the effectiveness of the proposed system and compare them with the ground-truth provided by the gastroenterologists.
	Address	Santorini (Greece)
	Corporate Author				Thesis
	Publisher	Springer-Verlag	Place of Publication	Berlin Heidelberg	Editor	A. Gasteratos, M. Vincze, and J.K. Tsotsos
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-540-79546-9	Medium
	Area	800	Expedition		Conference	ICVS
	Notes	OR; MV; MILAB; SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ SIV2008; IAM @ iam @ SIV2008			Serial	962
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	Author	Santiago Segui
	Title	A Sparse Bayesian Approach for Joint Feature Selection and Classifier Learning			Type	Report
	Year	2007	Publication	CVC Technical Report #113	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address	CVC (UAB)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Admin @ si @ Seg2007			Serial	826
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	Author	Santiago Segui
	Title	Contributions to the Diagnosis of Intestinal Motility by Automatic Image Analysis			Type	Book Whole
	Year	2011	Publication	PhD Thesis, Universitat de Barcelona-CVC	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	In the early twenty first century Given Imaging Ltd. presented wireless capsule endoscopy (WCE) as a new technological breakthrough that allowed the visualization of the intestine by using a small, swallowed camera. This small size device was received with a high enthusiasm within the medical community, and until now, it is still one of the medical devices with the highest use growth rate. WCE can be used as a novel diagnostic tool that presents several clinical advantages, since it is non-invasive and at the same time it provides, for the first time, a full picture of the small bowel morphology, contents and dynamics. Since its appearance, the WCE has been used to detect several intestinal dysfunctions such as: polyps, ulcers and bleeding. However, the visual analysis of WCE videos presents an important drawback: the long time required by the physicians for proper video visualization. In this sense and regarding to this limitation, the development of computer aided systems is required for the extensive use of WCE in the medical community. The work presented in this thesis is a set of contributions for the automatic image analysis and computer-aided diagnosis of intestinal motility disorders using WCE. Until now, the diagnosis of small bowel motility dysfunctions was basically performed by invasive techniques such as the manometry test, which can only be conducted at some referral centers around the world owing to the complexity of the procedure and the medial expertise required in the interpretation of the results. Our contributions are divided in three main blocks: 1. Image analysis by computer vision techniques to detect events in the endoluminal WCE scene. Several methods have been proposed to detect visual events such as: intestinal contractions, intestinal content, tunnel and wrinkles; 2. Machine learning techniques for the analysis and the manipulation of the data from WCE. These methods have been proposed in order to overcome the problems that the analysis of WCE presents such as: video acquisition cost, unlabeled data and large number of data; 3. Two different systems for the computer-aided diagnosis of intestinal motility disorders using WCE. The first system presents a fully automatic method that aids at discriminating healthy subjects from patients with severe intestinal motor disorders like pseudo-obstruction or food intolerance. The second system presents another automatic method that models healthy subjects and discriminate them from mild intestinal motility patients.
	Address
	Corporate Author				Thesis	Ph.D. thesis
	Publisher	Ediciones Graficas Rey	Place of Publication		Editor	Jordi Vitria
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB			Approved	no
	Call Number	Admin @ si @ Seg2011			Serial	1836
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	Author	Santi Puch; Irina Sanchez; Aura Hernandez-Sabate; Gemma Piella; Vesna Prckovska
	Title	Global Planar Convolutions for Improved Context Aggregation in Brain Tumor Segmentation			Type	Conference Article
	Year	2018	Publication	International MICCAI Brainlesion Workshop	Abbreviated Journal
	Volume	11384	Issue		Pages	393-405
	Keywords	Brain tumors; 3D fully-convolutional CNN; Magnetic resonance imaging; Global planar convolution
	Abstract	In this work, we introduce the Global Planar Convolution module as a building-block for fully-convolutional networks that aggregates global information and, therefore, enhances the context perception capabilities of segmentation networks in the context of brain tumor segmentation. We implement two baseline architectures (3D UNet and a residual version of 3D UNet, ResUNet) and present a novel architecture based on these two architectures, ContextNet, that includes the proposed Global Planar Convolution module. We show that the addition of such module eliminates the need of building networks with several representation levels, which tend to be over-parametrized and to showcase slow rates of convergence. Furthermore, we provide a visual demonstration of the behavior of GPC modules via visualization of intermediate representations. We finally participate in the 2018 edition of the BraTS challenge with our best performing models, that are based on ContextNet, and report the evaluation scores on the validation and the test sets of the challenge.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MICCAIW
	Notes	ADAS; 600.118			Approved	no
	Call Number	Admin @ si @ PSH2018			Serial	3251
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	Author	Sanket Biswas; Pau Riba; Josep Llados; Umapada Pal
	Title	DocSynth: A Layout Guided Approach for Controllable Document Image Synthesis			Type	Conference Article
	Year	2021	Publication	16th International Conference on Document Analysis and Recognition	Abbreviated Journal
	Volume	12823	Issue		Pages	555–568
	Keywords
	Abstract	Despite significant progress on current state-of-the-art image generation models, synthesis of document images containing multiple and complex object layouts is a challenging task. This paper presents a novel approach, called DocSynth, to automatically synthesize document images based on a given layout. In this work, given a spatial layout (bounding boxes with object categories) as a reference by the user, our proposed DocSynth model learns to generate a set of realistic document images consistent with the defined layout. Also, this framework has been adapted to this work as a superior baseline model for creating synthetic document image datasets for augmenting real data during training for document layout analysis tasks. Different sets of learning objectives have been also used to improve the model performance. Quantitatively, we also compare the generated results of our model with real data using standard evaluation metrics. The results highlight that our model can successfully generate realistic and diverse document images with multiple objects. We also present a comprehensive qualitative analysis summary of the different scopes of synthetic image generation tasks. Lastly, to our knowledge this is the first work of its kind.
	Address	Lausanne; Suissa; September 2021
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; 600.121; 600.140; 110.312			Approved	no
	Call Number	Admin @ si @ BRL2021a			Serial	3573
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