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Author Laura Igual; Joan Carles Soliva; Sergio Escalera; Roger Gimeno; Oscar Vilarroya; Petia Radeva edit   pdf
url  doi
openurl 
  Title Automatic Brain Caudate Nuclei Segmentation and Classification in Diagnostic of Attention-Deficit/Hyperactivity Disorder Type Journal Article
  Year 2012 Publication Computerized Medical Imaging and Graphics Abbreviated Journal (up) CMIG  
  Volume 36 Issue 8 Pages 591-600  
  Keywords Automatic caudate segmentation; Attention-Deficit/Hyperactivity Disorder; Diagnostic test; Machine learning; Decision stumps; Dissociated dipoles  
  Abstract We present a fully automatic diagnostic imaging test for Attention-Deficit/Hyperactivity Disorder diagnosis assistance based on previously found evidences of caudate nucleus volumetric abnormalities. The proposed method consists of different steps: a new automatic method for external and internal segmentation of caudate based on Machine Learning methodologies; the definition of a set of new volume relation features, 3D Dissociated Dipoles, used for caudate representation and classification. We separately validate the contributions using real data from a pediatric population and show precise internal caudate segmentation and discrimination power of the diagnostic test, showing significant performance improvements in comparison to other state-of-the-art methods.  
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  Notes OR; HuPBA; MILAB Approved no  
  Call Number Admin @ si @ ISE2012 Serial 2143  
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Author Michal Drozdzal; Santiago Segui; Carolina Malagelada; Fernando Azpiroz; Petia Radeva edit   pdf
doi  openurl
  Title Adaptable image cuts for motility inspection using WCE Type Journal Article
  Year 2013 Publication Computerized Medical Imaging and Graphics Abbreviated Journal (up) CMIG  
  Volume 37 Issue 1 Pages 72-80  
  Keywords  
  Abstract The Wireless Capsule Endoscopy (WCE) technology allows the visualization of the whole small intestine tract. Since the capsule is freely moving, mainly by the means of peristalsis, the data acquired during the study gives a lot of information about the intestinal motility. However, due to: (1) huge amount of frames, (2) complex intestinal scene appearance and (3) intestinal dynamics that make difficult the visualization of the small intestine physiological phenomena, the analysis of the WCE data requires computer-aided systems to speed up the analysis. In this paper, we propose an efficient algorithm for building a novel representation of the WCE video data, optimal for motility analysis and inspection. The algorithm transforms the 3D video data into 2D longitudinal view by choosing the most informative, from the intestinal motility point of view, part of each frame. This step maximizes the lumen visibility in its longitudinal extension. The task of finding “the best longitudinal view” has been defined as a cost function optimization problem which global minimum is obtained by using Dynamic Programming. Validation on both synthetic data and WCE data shows that the adaptive longitudinal view is a good alternative to the traditional motility analysis done by video analysis. The proposed novel data representation a new, holistic insight into the small intestine motility, allowing to easily define and analyze motility events that are difficult to spot by analyzing WCE video. Moreover, the visual inspection of small intestine motility is 4 times faster then by means of video skimming of the WCE.  
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  Notes MILAB; OR; 600.046; 605.203 Approved no  
  Call Number Admin @ si @ DSM2012 Serial 2151  
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Author Simeon Petkov; Xavier Carrillo; Petia Radeva; Carlo Gatta edit   pdf
doi  openurl
  Title Diaphragm border detection in coronary X-ray angiographies: New method and applications Type Journal Article
  Year 2014 Publication Computerized Medical Imaging and Graphics Abbreviated Journal (up) CMIG  
  Volume 38 Issue 4 Pages 296-305  
  Keywords  
  Abstract X-ray angiography is widely used in cardiac disease diagnosis during or prior to intravascular interventions. The diaphragm motion and the heart beating induce gray-level changes, which are one of the main obstacles in quantitative analysis of myocardial perfusion. In this paper we focus on detecting the diaphragm border in both single images or whole X-ray angiography sequences. We show that the proposed method outperforms state of the art approaches. We extend a previous publicly available data set, adding new ground truth data. We also compose another set of more challenging images, thus having two separate data sets of increasing difficulty. Finally, we show three applications of our method: (1) a strategy to reduce false positives in vessel enhanced images; (2) a digital diaphragm removal algorithm; (3) an improvement in Myocardial Blush Grade semi-automatic estimation.  
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  Notes MILAB; LAMP; 600.079 Approved no  
  Call Number Admin @ si @ PCR2014 Serial 2468  
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Author Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Debora Gil; Cristina Rodriguez de Miguel; Fernando Vilariño edit   pdf
doi  openurl
  Title WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians Type Journal Article
  Year 2015 Publication Computerized Medical Imaging and Graphics Abbreviated Journal (up) CMIG  
  Volume 43 Issue Pages 99-111  
  Keywords Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection  
  Abstract We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice.  
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  Series Volume Series Issue Edition  
  ISSN 0895-6111 ISBN Medium  
  Area Expedition Conference  
  Notes MV; IAM; 600.047; 600.060; 600.075;SIAI Approved no  
  Call Number Admin @ si @ BSF2015 Serial 2609  
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Author P. Canals; Simone Balocco; O. Diaz; J. Li; A. Garcia Tornel; M. Olive Gadea; M. Ribo edit  url
doi  openurl
  Title A fully automatic method for vascular tortuosity feature extraction in the supra-aortic region: unraveling possibilities in stroke treatment planning Type Journal Article
  Year 2023 Publication Computerized Medical Imaging and Graphics Abbreviated Journal (up) CMIG  
  Volume 104 Issue 102170 Pages  
  Keywords Artificial intelligence; Deep learning; Stroke; Thrombectomy; Vascular feature extraction; Vascular tortuosity  
  Abstract Vascular tortuosity of supra-aortic vessels is widely considered one of the main reasons for failure and delays in endovascular treatment of large vessel occlusion in patients with acute ischemic stroke. Characterization of tortuosity is a challenging task due to the lack of objective, robust and effective analysis tools. We present a fully automatic method for arterial segmentation, vessel labelling and tortuosity feature extraction applied to the supra-aortic region. A sample of 566 computed tomography angiography scans from acute ischemic stroke patients (aged 74.8 ± 12.9, 51.0% females) were used for training, validation and testing of a segmentation module based on a U-Net architecture (162 cases) and a vessel labelling module powered by a graph U-Net (566 cases). Successively, 30 cases were processed for testing of a tortuosity feature extraction module. Measurements obtained through automatic processing were compared to manual annotations from two observers for a thorough validation of the method. The proposed feature extraction method presented similar performance to the inter-rater variability observed in the measurement of 33 geometrical and morphological features of the arterial anatomy in the supra-aortic region. This system will contribute to the development of more complex models to advance the treatment of stroke by adding immediate automation, objectivity, repeatability and robustness to the vascular tortuosity characterization of patients.  
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  Notes MILAB Approved no  
  Call Number Admin @ si @ CBD2023 Serial 4005  
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Author Tadashi Araki; Nobutaka Ikeda; Nilanjan Dey; Sayan Chakraborty; Luca Saba; Dinesh Kumar; Elisa Cuadrado Godia; Xiaoyi Jiang; Ajay Gupta; Petia Radeva; John R. Laird; Andrew Nicolaides; Jasjit S. Suri edit  doi
openurl 
  Title A comparative approach of four different image registration techniques for quantitative assessment of coronary artery calcium lesions using intravascular ultrasound Type Journal Article
  Year 2015 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB  
  Volume 118 Issue 2 Pages 158-172  
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  Notes MILAB Approved no  
  Call Number Admin @ si @ AID2015 Serial 2640  
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Author Sumit K. Banchhor; Tadashi Araki; Narendra D. Londhe; Nobutaka Ikeda; Petia Radeva; Ayman El-Baz; Luca Saba; Andrew Nicolaides; Shoaib Shafique; John R. Laird; Jasjit S. Suri edit  doi
openurl 
  Title Five multiresolution-based calcium volume measurement techniques from coronary IVUS videos: A comparative approach Type Journal Article
  Year 2016 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB  
  Volume 134 Issue Pages 237-258  
  Keywords  
  Abstract BACKGROUND AND OBJECTIVE:
Fast intravascular ultrasound (IVUS) video processing is required for calcium volume computation during the planning phase of percutaneous coronary interventional (PCI) procedures. Nonlinear multiresolution techniques are generally applied to improve the processing time by down-sampling the video frames.
METHODS:
This paper presents four different segmentation methods for calcium volume measurement, namely Threshold-based, Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) embedded with five different kinds of multiresolution techniques (bilinear, bicubic, wavelet, Lanczos, and Gaussian pyramid). This leads to 20 different kinds of combinations. IVUS image data sets consisting of 38,760 IVUS frames taken from 19 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/sec.). The performance of these 20 systems is compared with and without multiresolution using the following metrics: (a) computational time; (b) calcium volume; (c) image quality degradation ratio; and (d) quality assessment ratio.
RESULTS:
Among the four segmentation methods embedded with five kinds of multiresolution techniques, FCM segmentation combined with wavelet-based multiresolution gave the best performance. FCM and wavelet experienced the highest percentage mean improvement in computational time of 77.15% and 74.07%, respectively. Wavelet interpolation experiences the highest mean precision-of-merit (PoM) of 94.06 ± 3.64% and 81.34 ± 16.29% as compared to other multiresolution techniques for volume level and frame level respectively. Wavelet multiresolution technique also experiences the highest Jaccard Index and Dice Similarity of 0.7 and 0.8, respectively. Multiresolution is a nonlinear operation which introduces bias and thus degrades the image. The proposed system also provides a bias correction approach to enrich the system, giving a better mean calcium volume similarity for all the multiresolution-based segmentation methods. After including the bias correction, bicubic interpolation gives the largest increase in mean calcium volume similarity of 4.13% compared to the rest of the multiresolution techniques. The system is automated and can be adapted in clinical settings.
CONCLUSIONS:
We demonstrated the time improvement in calcium volume computation without compromising the quality of IVUS image. Among the 20 different combinations of multiresolution with calcium volume segmentation methods, the FCM embedded with wavelet-based multiresolution gave the best performance.
 
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  Notes MILAB; Approved no  
  Call Number Admin @ si @ BAL2016 Serial 2830  
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Author Giuseppe Pezzano; Vicent Ribas Ripoll; Petia Radeva edit  url
openurl 
  Title CoLe-CNN: Context-learning convolutional neural network with adaptive loss function for lung nodule segmentation Type Journal Article
  Year 2021 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB  
  Volume 198 Issue Pages 105792  
  Keywords  
  Abstract Background and objective:An accurate segmentation of lung nodules in computed tomography images is a crucial step for the physical characterization of the tumour. Being often completely manually accomplished, nodule segmentation turns to be a tedious and time-consuming procedure and this represents a high obstacle in clinical practice. In this paper, we propose a novel Convolutional Neural Network for nodule segmentation that combines a light and efficient architecture with innovative loss function and segmentation strategy. Methods:In contrast to most of the standard end-to-end architectures for nodule segmentation, our network learns the context of the nodules by producing two masks representing all the background and secondary-important elements in the Computed Tomography scan. The nodule is detected by subtracting the context from the original scan image. Additionally, we introduce an asymmetric loss function that automatically compensates for potential errors in the nodule annotations. We trained and tested our Neural Network on the public LIDC-IDRI database, compared it with the state of the art and run a pseudo-Turing test between four radiologists and the network. Results:The results proved that the behaviour of the algorithm is very near to the human performance and its segmentation masks are almost indistinguishable from the ones made by the radiologists. Our method clearly outperforms the state of the art on CT nodule segmentation in terms of F1 score and IoU of and respectively. Conclusions: The main structure of the network ensures all the properties of the UNet architecture, while the Multi Convolutional Layers give a more accurate pattern recognition. The newly adopted solutions also increase the details on the border of the nodule, even under the noisiest conditions. This method can be applied now for single CT slice nodule segmentation and it represents a starting point for the future development of a fully automatic 3D segmentation software.  
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  Notes MILAB; no proj Approved no  
  Call Number Admin @ si @ PRR2021 Serial 3530  
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Author Juan Borrego-Carazo; Carles Sanchez; David Castells; Jordi Carrabina; Debora Gil edit   pdf
doi  openurl
  Title BronchoPose: an analysis of data and model configuration for vision-based bronchoscopy pose estimation Type Journal Article
  Year 2023 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal (up) CMPB  
  Volume 228 Issue Pages 107241  
  Keywords Videobronchoscopy guiding; Deep learning; Architecture optimization; Datasets; Standardized evaluation framework; Pose estimation  
  Abstract Vision-based bronchoscopy (VB) models require the registration of the virtual lung model with the frames from the video bronchoscopy to provide effective guidance during the biopsy. The registration can be achieved by either tracking the position and orientation of the bronchoscopy camera or by calibrating its deviation from the pose (position and orientation) simulated in the virtual lung model. Recent advances in neural networks and temporal image processing have provided new opportunities for guided bronchoscopy. However, such progress has been hindered by the lack of comparative experimental conditions.
In the present paper, we share a novel synthetic dataset allowing for a fair comparison of methods. Moreover, this paper investigates several neural network architectures for the learning of temporal information at different levels of subject personalization. In order to improve orientation measurement, we also present a standardized comparison framework and a novel metric for camera orientation learning. Results on the dataset show that the proposed metric and architectures, as well as the standardized conditions, provide notable improvements to current state-of-the-art camera pose estimation in video bronchoscopy.
 
  Address  
  Corporate Author Thesis  
  Publisher Elsevier Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes IAM; Approved no  
  Call Number Admin @ si @ BSC2023 Serial 3702  
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Author Debora Gil; David Roche; Agnes Borras; Jesus Giraldo edit  doi
openurl 
  Title Terminating Evolutionary Algorithms at their Steady State Type Journal Article
  Year 2015 Publication Computational Optimization and Applications Abbreviated Journal (up) COA  
  Volume 61 Issue 2 Pages 489-515  
  Keywords Evolutionary algorithms; Termination condition; Steady state; Differential evolution  
  Abstract Assessing the reliability of termination conditions for evolutionary algorithms (EAs) is of prime importance. An erroneous or weak stop criterion can negatively affect both the computational effort and the final result. We introduce a statistical framework for assessing whether a termination condition is able to stop an EA at its steady state, so that its results can not be improved anymore. We use a regression model in order to determine the requirements ensuring that a measure derived from EA evolving population is related to the distance to the optimum in decision variable space. Our framework is analyzed across 24 benchmark test functions and two standard termination criteria based on function fitness value in objective function space and EA population decision variable space distribution for the differential evolution (DE) paradigm. Results validate our framework as a powerful tool for determining the capability of a measure for terminating EA and the results also identify the decision variable space distribution as the best-suited for accurately terminating DE in real-world applications.  
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  Corporate Author Thesis  
  Publisher Springer US Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0926-6003 ISBN Medium  
  Area Expedition Conference  
  Notes IAM; 600.044; 605.203; 600.060; 600.075 Approved no  
  Call Number Admin @ si @ GRB2015 Serial 2560  
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Author Antonio Clavelli; Dimosthenis Karatzas; Josep Llados; Mario Ferraro; Giuseppe Boccignone edit   pdf
doi  openurl
  Title Modelling task-dependent eye guidance to objects in pictures Type Journal Article
  Year 2014 Publication Cognitive Computation Abbreviated Journal (up) CoCom  
  Volume 6 Issue 3 Pages 558-584  
  Keywords Visual attention; Gaze guidance; Value; Payoff; Stochastic fixation prediction  
  Abstract 5Y Impact Factor: 1.14 / 3rd (Computer Science, Artificial Intelligence)
We introduce a model of attentional eye guidance based on the rationale that the deployment of gaze is to be considered in the context of a general action-perception loop relying on two strictly intertwined processes: sensory processing, depending on current gaze position, identifies sources of information that are most valuable under the given task; motor processing links such information with the oculomotor act by sampling the next gaze position and thus performing the gaze shift. In such a framework, the choice of where to look next is task-dependent and oriented to classes of objects embedded within pictures of complex scenes. The dependence on task is taken into account by exploiting the value and the payoff of gazing at certain image patches or proto-objects that provide a sparse representation of the scene objects. The different levels of the action-perception loop are represented in probabilistic form and eventually give rise to a stochastic process that generates the gaze sequence. This way the model also accounts for statistical properties of gaze shifts such as individual scan path variability. Results of the simulations are compared either with experimental data derived from publicly available datasets and from our own experiments.
 
  Address  
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  Publisher Springer US Place of Publication Editor  
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  ISSN 1866-9956 ISBN Medium  
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  Notes DAG; 600.056; 600.045; 605.203; 601.212; 600.077 Approved no  
  Call Number Admin @ si @ CKL2014 Serial 2419  
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Author Chenyang Fu; Kaida Xiao; Dimosthenis Karatzas; Sophie Wuerger edit  doi
openurl 
  Title Investigation of Unique Hue Setting Changes with Ageing Type Journal Article
  Year 2011 Publication Chinese Optics Letters Abbreviated Journal (up) COL  
  Volume 9 Issue 5 Pages 053301-1-5  
  Keywords  
  Abstract Clromatic sensitivity along the protan, deutan, and tritan lines and the loci of the unique hues (red, green, yellow, blue) for a very large sample (n = 185) of colour-normal observers ranging from 18 to 75 years of age are assessed. Visual judgments are obtained under normal viewing conditions using colour patches on self-luminous display under controlled adaptation conditions. Trivector discrimination thresholds show an increase as a function of age along the protan, deutan, and tritan axes, with the largest increase present along the tritan line, less pronounced shifts in unique hue settings are also observed. Based on the chromatic (protan, deutan, tritan) thresholds and using scaled cone signals, we predict the unique hue changes with ageing. A dependency on age for unique red and unique yellow for predicted hue angle is found. We conclude that the chromatic sensitivity deteriorates significantly with age, whereas the appearance of unique hues is much less affected, remaining almost constant despite the known changes in the ocular media.  
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  Notes DAG Approved no  
  Call Number Admin @ si @ XFW2011 Serial 1818  
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Author Juan Ramon Terven Salinas; Joaquin Salas; Bogdan Raducanu edit   pdf
url  doi
openurl 
  Title New Opportunities for Computer Vision-Based Assistive Technology Systems for the Visually Impaired Type Journal Article
  Year 2014 Publication Computer Abbreviated Journal (up) COMP  
  Volume 47 Issue 4 Pages 52-58  
  Keywords  
  Abstract Computing advances and increased smartphone use gives technology system designers greater flexibility in exploiting computer vision to support visually impaired users. Understanding these users' needs will certainly provide insight for the development of improved usability of computing devices.  
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  Series Volume Series Issue Edition  
  ISSN 0018-9162 ISBN Medium  
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  Notes OR;MV Approved no  
  Call Number Admin @ si @ TSR2014a Serial 2317  
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Author Miguel Reyes; Albert Clapes; Jose Ramirez; Juan R Revilla; Sergio Escalera edit   pdf
url  doi
openurl 
  Title Automatic Digital Biometry Analysis based on Depth Maps Type Journal Article
  Year 2013 Publication Computers in Industry Abbreviated Journal (up) COMPUTIND  
  Volume 64 Issue 9 Pages 1316-1325  
  Keywords Multi-modal data fusion; Depth maps; Posture analysis; Anthropometric data; Musculo-skeletal disorders; Gesture analysis  
  Abstract World Health Organization estimates that 80% of the world population is affected by back-related disorders during his life. Current practices to analyze musculo-skeletal disorders (MSDs) are expensive, subjective, and invasive. In this work, we propose a tool for static body posture analysis and dynamic range of movement estimation of the skeleton joints based on 3D anthropometric information from multi-modal data. Given a set of keypoints, RGB and depth data are aligned, depth surface is reconstructed, keypoints are matched, and accurate measurements about posture and spinal curvature are computed. Given a set of joints, range of movement measurements is also obtained. Moreover, gesture recognition based on joint movements is performed to look for the correctness in the development of physical exercises. The system shows high precision and reliable measurements, being useful for posture reeducation purposes to prevent MSDs, as well as tracking the posture evolution of patients in rehabilitation treatments.  
  Address  
  Corporate Author Thesis  
  Publisher Elsevier Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes HuPBA;MILAB Approved no  
  Call Number Admin @ si @ RCR2013 Serial 2252  
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Author Joan Serrat; Felipe Lumbreras; Antonio Lopez edit   pdf
doi  openurl
  Title Cost estimation of custom hoses from STL files and CAD drawings Type Journal Article
  Year 2013 Publication Computers in Industry Abbreviated Journal (up) COMPUTIND  
  Volume 64 Issue 3 Pages 299-309  
  Keywords On-line quotation; STL format; Regression; Gaussian process  
  Abstract We present a method for the cost estimation of custom hoses from CAD models. They can come in two formats, which are easy to generate: a STL file or the image of a CAD drawing showing several orthogonal projections. The challenges in either cases are, first, to obtain from them a high level 3D description of the shape, and second, to learn a regression function for the prediction of the manufacturing time, based on geometric features of the reconstructed shape. The chosen description is the 3D line along the medial axis of the tube and the diameter of the circular sections along it. In order to extract it from STL files, we have adapted RANSAC, a robust parametric fitting algorithm. As for CAD drawing images, we propose a new technique for 3D reconstruction from data entered on any number of orthogonal projections. The regression function is a Gaussian process, which does not constrain the function to adopt any specific form and is governed by just two parameters. We assess the accuracy of the manufacturing time estimation by k-fold cross validation on 171 STL file models for which the time is provided by an expert. The results show the feasibility of the method, whereby the relative error for 80% of the testing samples is below 15%.  
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  Corporate Author Thesis  
  Publisher Elsevier Place of Publication Editor  
  Language Summary Language Original Title  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes ADAS; 600.057; 600.054; 605.203 Approved no  
  Call Number Admin @ si @ SLL2013; ADAS @ adas @ Serial 2161  
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