|
Records |
Links |
|
Author |
Patricia Marquez; Debora Gil ; Aura Hernandez-Sabate |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![find book details (via ISBN) isbn](http://refbase.cvc.uab.es/img/isbn.gif)
|
|
Title |
Error Analysis for Lucas-Kanade Based Schemes |
Type |
Conference Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
9th International Conference on Image Analysis and Recognition |
Abbreviated Journal |
|
|
|
Volume |
7324 |
Issue |
I |
Pages |
184-191 |
|
|
Keywords |
Optical flow, Confidence measure, Lucas-Kanade, Cardiac Magnetic Resonance |
|
|
Abstract |
Optical flow is a valuable tool for motion analysis in medical imaging sequences. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in medical sequences. This paper presents an error analysis of Lucas-Kanade schemes in terms of intrinsic design errors and numerical stability of the algorithm. Our analysis provides a confidence measure that is naturally correlated to the accuracy of the flow field. Our experiments show the higher predictive value of our confidence measure compared to existing measures. |
|
|
Address |
Aveiro, Portugal |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer-Verlag Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
|
Language |
english |
Summary Language |
|
Original Title |
|
|
|
Series Editor |
Campilho, Aurélio and Kamel, Mohamed |
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
0302-9743 |
ISBN |
978-3-642-31294-6 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
ICIAR |
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ MGH2012a |
Serial |
1899 |
|
Permanent link to this record |
|
|
|
|
Author |
Albert Andaluz; Francesc Carreras; Cristina Santa Marta;Debora Gil |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![find record details (via OpenURL) openurl](http://refbase.cvc.uab.es/img/xref.gif)
|
|
Title |
Myocardial torsion estimation with Tagged-MRI in the OsiriX platform |
Type |
Conference Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
ISBI Workshop on Open Source Medical Image Analysis software |
Abbreviated Journal |
|
|
|
Volume |
|
Issue |
|
Pages |
|
|
|
Keywords |
|
|
|
Abstract |
Myocardial torsion (MT) plays a crucial role in the assessment of the functionality of the
left ventricle. For this purpose, the IAM group at the CVC has developed the Harmonic Phase Flow (HPF) plugin for the Osirix DICOM platform . We have validated its funcionalty on sequences acquired using different protocols and including healthy and pathological cases. Results show similar torsion trends for SPAMM acquisitions, with pathological cases introducing expected deviations from the ground truth. Finally, we provide the plugin free of charge at http://iam.cvc.uab.es |
|
|
Address |
Barcelona, Spain |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
IEEE |
Place of Publication |
|
Editor |
Wiro Niessen (Erasmus MC) and Marc Modat (UCL) |
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
ISBI |
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ ACS2012 |
Serial |
1900 |
|
Permanent link to this record |
|
|
|
|
Author |
Ferran Poveda; Enric Marti; Debora Gil; Francesc Carreras; Manel Ballester |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![goto web page (via DOI) doi](http://refbase.cvc.uab.es/img/doi.gif)
|
|
Title |
Helical Structure of Ventricular Anatomy by Diffusion Tensor Cardiac MR Tractography |
Type |
Journal Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
Journal of American College of Cardiology |
Abbreviated Journal |
JACC |
|
|
Volume |
5 |
Issue |
7 |
Pages |
754-755 |
|
|
Keywords |
|
|
|
Abstract |
It is widely accepted that myocardial fiber architecture plays a critical role in myocardial contractility and relaxation (1). However, there is a lack of consensus about the distribution of the myocardial fibers and their spatial arrangement in the left and right ventricles. An understanding of the cardiac architecture should benefit the ventricular functional assessment, left ventricular reconstructive surgery planning, or resynchronization therapy in heart failure. Researchers have proposed several conceptual models to describe the architecture of the heart, ranging from gross dissection to histological presentation. The cardiac mesh model (2) proposes that the myocytes are arranged longitudinally and radially change their angulation along the myocardial depth. By contrast, the helical ventricular myocardial model states that the ventricular myocardium is a continuous anatomical helical layout of myocardial fibers (1 |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
|
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
1936-878X |
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ PMG2012 |
Serial |
1985 |
|
Permanent link to this record |
|
|
|
|
Author |
Ferran Poveda; Debora Gil;Enric Marti |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![find book details (via ISBN) isbn](http://refbase.cvc.uab.es/img/isbn.gif)
|
|
Title |
Multi-resolution DT-MRI cardiac tractography |
Type |
Conference Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges |
Abbreviated Journal |
|
|
|
Volume |
7746 |
Issue |
|
Pages |
270-277 |
|
|
Keywords |
|
|
|
Abstract |
Even using objective measures from DT-MRI no consensus about myocardial architecture has been achieved so far. Streamlining provides good reconstructions at low level of detail, but falls short to give global abstract interpretations. In this paper, we present a multi-resolution methodology that is able to produce simplified representations of cardiac architecture. Our approach produces a reduced set of tracts that are representative of the main geometric features of myocardial anatomical structure. Experiments show that fiber geometry is preserved along reductions, which validates the simplified model for interpretation of cardiac architecture. |
|
|
Address |
Nice, France |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
0302-9743 |
ISBN |
978-3-642-36960-5 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
STACOM |
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ PGM2012 |
Serial |
1986 |
|
Permanent link to this record |
|
|
|
|
Author |
Debora Gil;Agnes Borras;Ruth Aris;Mariano Vazquez;Pierre Lafortune; Guillame Houzeaux |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![find book details (via ISBN) isbn](http://refbase.cvc.uab.es/img/isbn.gif)
|
|
Title |
What a difference in biomechanics cardiac fiber makes |
Type |
Conference Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges |
Abbreviated Journal |
|
|
|
Volume |
7746 |
Issue |
|
Pages |
253-260 |
|
|
Keywords |
|
|
|
Abstract |
Computational simulations of the heart are a powerful tool for a comprehensive understanding of cardiac function and its intrinsic relationship with its muscular architecture. Cardiac biomechanical models require a vector field representing the orientation of cardiac fibers. A wrong orientation of the fibers can lead to a
non-realistic simulation of the heart functionality. In this paper we explore the impact of the fiber information on the simulated biomechanics of cardiac muscular anatomy. We have used the John Hopkins database to perform a biomechanical simulation using both a synthetic benchmark fiber distribution and the data obtained experimentally from DTI. Results illustrate how differences in fiber orientation affect heart deformation along cardiac cycle. |
|
|
Address |
Nice, France |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
0302-9743 |
ISBN |
978-3-642-36960-5 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
STACOM |
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ GBA2012 |
Serial |
1987 |
|
Permanent link to this record |
|
|
|
|
Author |
Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![goto web page (via DOI) doi](http://refbase.cvc.uab.es/img/doi.gif)
![find record details (via OpenURL) openurl](http://refbase.cvc.uab.es/img/xref.gif)
|
|
Title |
Optimal Medial Surface Generation for Anatomical Volume Representations |
Type |
Book Chapter |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
Abdominal Imaging. Computational and Clinical Applications |
Abbreviated Journal |
LNCS |
|
|
Volume |
7601 |
Issue |
|
Pages |
265-273 |
|
|
Keywords |
Medial surface representation; volume reconstruction |
|
|
Abstract |
Medial representations are a widely used technique in abdominal organ shape representation and parametrization. Those methods require good medial manifolds as a starting point. Any medial
surface used to parametrize a volume should be simple enough to allow an easy manipulation and complete enough to allow an accurate reconstruction of the volume. Obtaining good quality medial
surfaces is still a problem with current iterative thinning methods. This forces the usage of generic, pre-calculated medial templates that are adapted to the final shape at the cost of a drop in volume reconstruction.
This paper describes an operator for generation of medial structures that generates clean and complete manifolds well suited for their further use in medial representations of abdominal organ volumes. While being simpler than thinning surfaces, experiments show its high performance in volume reconstruction and preservation of medial surface main branching topology. |
|
|
Address |
Nice, France |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
Yoshida, Hiroyuki and Hawkes, David and Vannier, MichaelW. |
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
0302-9743 |
ISBN |
978-3-642-33611-9 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
STACOM |
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ VGG2012b |
Serial |
1988 |
|
Permanent link to this record |
|
|
|
|
Author |
Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![find book details (via ISBN) isbn](http://refbase.cvc.uab.es/img/isbn.gif)
|
|
Title |
A medial map capturing the essential geometry of organs |
Type |
Conference Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
ISBI Workshop on Open Source Medical Image Analysis software |
Abbreviated Journal |
|
|
|
Volume |
|
Issue |
|
Pages |
1691 - 1694 |
|
|
Keywords |
Medial Surface Representation, Volume Reconstruction,Geometry , Image reconstruction , Liver , Manifolds , Shape , Surface morphology , Surface reconstruction |
|
|
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Accurate computation of one pixel wide medial surfaces is mandatory. Those surfaces must represent faithfully the geometry of the volume. Although morphological methods produce excellent results in 2D, their complexity and quality drops across dimensions, due to a more complex description of pixel neighborhoods. This paper introduces a continuous operator for accurate and efficient computation of medial structures of arbitrary dimension. Our experiments show its higher performance for medical imaging applications in terms of simplicity of medial structures and capability for reconstructing the anatomical volume |
|
|
Address |
Barcelona,Spain |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
IEEE |
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
1945-7928 |
ISBN |
978-1-4577-1857-1 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
ISBI |
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ VGG2012a |
Serial |
1989 |
|
Permanent link to this record |
|
|
|
|
Author |
Patricia Marquez;Debora Gil;Aura Hernandez-Sabate |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![find book details (via ISBN) isbn](http://refbase.cvc.uab.es/img/isbn.gif)
|
|
Title |
A Complete Confidence Framework for Optical Flow |
Type |
Conference Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2012 |
Publication |
12th European Conference on Computer Vision – Workshops and Demonstrations |
Abbreviated Journal |
|
|
|
Volume |
7584 |
Issue |
2 |
Pages |
124-133 |
|
|
Keywords |
Optical flow, confidence measures, sparsification plots, error prediction plots |
|
|
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs, exploring the use of medial manifolds for the representation of multi-organ relations. |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer-Verlag |
Place of Publication |
Florence, Italy, October 7-13, 2012 |
Editor |
Andrea Fusiello, Vittorio Murino ,Rita Cucchiara |
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
978-3-642-33867-0 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
ECCVW |
|
|
Notes |
IAM;ADAS; |
Approved |
no |
|
|
Call Number |
IAM @ iam @ MGH2012b |
Serial |
1991 |
|
Permanent link to this record |
|
|
|
|
Author |
Mariano Vazquez; Ruth Aris; Guillaume Hozeaux; R.Aubry; P.Villar;Jaume Garcia ; Debora Gil; Francesc Carreras |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![goto web page (via DOI) doi](http://refbase.cvc.uab.es/img/doi.gif)
|
|
Title |
A massively parallel computational electrophysiology model of the heart |
Type |
Journal Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2011 |
Publication |
International Journal for Numerical Methods in Biomedical Engineering |
Abbreviated Journal |
IJNMBE |
|
|
Volume |
27 |
Issue |
|
Pages |
1911-1929 |
|
|
Keywords |
computational electrophysiology; parallelization; finite element methods |
|
|
Abstract |
This paper presents a patient-sensitive simulation strategy capable of using the most efficient way the high-performance computational resources. The proposed strategy directly involves three different players: Computational Mechanics Scientists (CMS), Image Processing Scientists and Cardiologists, each one mastering its own expertise area within the project. This paper describes the general integrative scheme but focusing on the CMS side presents a massively parallel implementation of computational electrophysiology applied to cardiac tissue simulation. The paper covers different angles of the computational problem: equations, numerical issues, the algorithm and parallel implementation. The proposed methodology is illustrated with numerical simulations testing all the different possibilities, ranging from small domains up to very large ones. A key issue is the almost ideal scalability not only for large and complex problems but also for medium-size meshes. The explicit formulation is particularly well suited for solving this highly transient problems, with very short time-scale. |
|
|
Address |
Swansea (UK) |
|
|
Corporate Author |
John Wiley & Sons, Ltd. |
Thesis |
|
|
|
Publisher |
John Wiley & Sons, Ltd. |
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ VAH2011 |
Serial |
1198 |
|
Permanent link to this record |
|
|
|
|
Author |
Debora Gil; Aura Hernandez-Sabate; Mireia Brunat;Steven Jansen; Jordi Martinez-Vilalta |
![download PDF file pdf](http://refbase.cvc.uab.es/img/file_PDF.gif)
![find record details (via OpenURL) openurl](http://refbase.cvc.uab.es/img/xref.gif)
|
|
Title |
Structure-preserving smoothing of biomedical images |
Type |
Journal Article |
|
Year ![sorted by Year field, descending order (down)](http://refbase.cvc.uab.es/img/sort_desc.gif) |
2011 |
Publication |
Pattern Recognition |
Abbreviated Journal |
PR |
|
|
Volume |
44 |
Issue |
9 |
Pages |
1842-1851 |
|
|
Keywords |
Non-linear smoothing; Differential geometry; Anatomical structures; segmentation; Cardiac magnetic resonance; Computerized tomography |
|
|
Abstract |
Smoothing of biomedical images should preserve gray-level transitions between adjacent tissues, while restoring contours consistent with anatomical structures. Anisotropic diffusion operators are based on image appearance discontinuities (either local or contextual) and might fail at weak inter-tissue transitions. Meanwhile, the output of block-wise and morphological operations is prone to present a block structure due to the shape and size of the considered pixel neighborhood. In this contribution, we use differential geometry concepts to define a diffusion operator that restricts to image consistent level-sets. In this manner, the final state is a non-uniform intensity image presenting homogeneous inter-tissue transitions along anatomical structures, while smoothing intra-structure texture. Experiments on different types of medical images (magnetic resonance, computerized tomography) illustrate its benefit on a further process (such as segmentation) of images. |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
|
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
0031-3203 |
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM; ADAS |
Approved |
no |
|
|
Call Number |
IAM @ iam @ GHB2011 |
Serial |
1526 |
|
Permanent link to this record |