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Author Santiago Segui; Michal Drozdzal; Guillem Pascual; Petia Radeva; Carolina Malagelada; Fernando Azpiroz; Jordi Vitria edit   pdf
url  openurl
  Title Generic Feature Learning for Wireless Capsule Endoscopy Analysis Type Journal Article
  Year 2016 Publication (down) Computers in Biology and Medicine Abbreviated Journal CBM  
  Volume 79 Issue Pages 163-172  
  Keywords Wireless capsule endoscopy; Deep learning; Feature learning; Motility analysis  
  Abstract The interpretation and analysis of wireless capsule endoscopy (WCE) recordings is a complex task which requires sophisticated computer aided decision (CAD) systems to help physicians with video screening and, finally, with the diagnosis. Most CAD systems used in capsule endoscopy share a common system design, but use very different image and video representations. As a result, each time a new clinical application of WCE appears, a new CAD system has to be designed from the scratch. This makes the design of new CAD systems very time consuming. Therefore, in this paper we introduce a system for small intestine motility characterization, based on Deep Convolutional Neural Networks, which circumvents the laborious step of designing specific features for individual motility events. Experimental results show the superiority of the learned features over alternative classifiers constructed using state-of-the-art handcrafted features. In particular, it reaches a mean classification accuracy of 96% for six intestinal motility events, outperforming the other classifiers by a large margin (a 14% relative performance increase).  
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  Notes OR; MILAB;MV; Approved no  
  Call Number Admin @ si @ SDP2016 Serial 2836  
Permanent link to this record
 

 
Author Sumit K. Banchhor; Narendra D. Londhe; Tadashi Araki; Luca Saba; Petia Radeva; Narendra N. Khanna; Jasjit S. Suri edit  url
openurl 
  Title Calcium detection, its quantification, and grayscale morphology-based risk stratification using machine learning in multimodality big data coronary and carotid scans: A review. Type Journal Article
  Year 2018 Publication (down) Computers in Biology and Medicine Abbreviated Journal CBM  
  Volume 101 Issue Pages 184-198  
  Keywords Heart disease; Stroke; Atherosclerosis; Intravascular; Coronary; Carotid; Calcium; Morphology; Risk stratification  
  Abstract Purpose of review

Atherosclerosis is the leading cause of cardiovascular disease (CVD) and stroke. Typically, atherosclerotic calcium is found during the mature stage of the atherosclerosis disease. It is therefore often a challenge to identify and quantify the calcium. This is due to the presence of multiple components of plaque buildup in the arterial walls. The American College of Cardiology/American Heart Association guidelines point to the importance of calcium in the coronary and carotid arteries and further recommend its quantification for the prevention of heart disease. It is therefore essential to stratify the CVD risk of the patient into low- and high-risk bins.
Recent finding

Calcium formation in the artery walls is multifocal in nature with sizes at the micrometer level. Thus, its detection requires high-resolution imaging. Clinical experience has shown that even though optical coherence tomography offers better resolution, intravascular ultrasound still remains an important imaging modality for coronary wall imaging. For a computer-based analysis system to be complete, it must be scientifically and clinically validated. This study presents a state-of-the-art review (condensation of 152 publications after examining 200 articles) covering the methods for calcium detection and its quantification for coronary and carotid arteries, the pros and cons of these methods, and the risk stratification strategies. The review also presents different kinds of statistical models and gold standard solutions for the evaluation of software systems useful for calcium detection and quantification. Finally, the review concludes with a possible vision for designing the next-generation system for better clinical outcomes.
 
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  Notes MILAB; no proj Approved no  
  Call Number Admin @ si @ BLA2018 Serial 3188  
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Author Giuseppe Pezzano; Oliver Diaz; Vicent Ribas Ripoll; Petia Radeva edit  url
doi  openurl
  Title CoLe-CNN+: Context learning – Convolutional neural network for COVID-19-Ground-Glass-Opacities detection and segmentation Type Journal Article
  Year 2021 Publication (down) Computers in Biology and Medicine Abbreviated Journal CBM  
  Volume 136 Issue Pages 104689  
  Keywords  
  Abstract The most common tool for population-wide COVID-19 identification is the Reverse Transcription-Polymerase Chain Reaction test that detects the presence of the virus in the throat (or sputum) in swab samples. This test has a sensitivity between 59% and 71%. However, this test does not provide precise information regarding the extension of the pulmonary infection. Moreover, it has been proven that through the reading of a computed tomography (CT) scan, a clinician can provide a more complete perspective of the severity of the disease. Therefore, we propose a comprehensive system for fully-automated COVID-19 detection and lesion segmentation from CT scans, powered by deep learning strategies to support decision-making process for the diagnosis of COVID-19.  
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  Area Expedition Conference  
  Notes MILAB; no menciona Approved no  
  Call Number Admin @ si @ PDR2021 Serial 3635  
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Author Naila Murray; Sandra Skaff; Luca Marchesotti; Florent Perronnin edit  url
openurl 
  Title Towards automatic and flexible concept transfer Type Journal Article
  Year 2012 Publication (down) Computers and Graphics Abbreviated Journal CG  
  Volume 36 Issue 6 Pages 622–634  
  Keywords  
  Abstract This paper introduces a novel approach to automatic, yet flexible, image concepttransfer; examples of concepts are “romantic”, “earthy”, and “luscious”. The presented method modifies the color content of an input image given only a concept specified by a user in natural language, thereby requiring minimal user input. This method is particularly useful for users who are aware of the message they wish to convey in the transferred image while being unsure of the color combination needed to achieve the corresponding transfer. Our framework is flexible for two reasons. First, the user may select one of two modalities to map input image chromaticities to target concept chromaticities depending on the level of photo-realism required. Second, the user may adjust the intensity level of the concepttransfer to his/her liking with a single parameter. The proposed method uses a convex clustering algorithm, with a novel pruning mechanism, to automatically set the complexity of models of chromatic content. Results show that our approach yields transferred images which effectively represent concepts as confirmed by a user study.  
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  ISSN 0097-8493 ISBN Medium  
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  Notes CIC Approved no  
  Call Number Admin @ si @ MSM2012 Serial 2002  
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Author Felipe Lumbreras; Joan Serrat edit  openurl
  Title Segmentation of petrographical images of marbles Type Journal Article
  Year 1996 Publication (down) Computers and Geosciences. 22(5):547–558 Abbreviated Journal  
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  Notes ADAS Approved no  
  Call Number ADAS @ adas @ LuS1996b Serial 82  
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Author Henry Velesaca; Patricia Suarez; Raul Mira; Angel Sappa edit   pdf
url  openurl
  Title Computer Vision based Food Grain Classification: a Comprehensive Survey Type Journal Article
  Year 2021 Publication (down) Computers and Electronics in Agriculture Abbreviated Journal CEA  
  Volume 187 Issue Pages 106287  
  Keywords  
  Abstract This manuscript presents a comprehensive survey on recent computer vision based food grain classification techniques. It includes state-of-the-art approaches intended for different grain varieties. The approaches proposed in the literature are analyzed according to the processing stages considered in the classification pipeline, making it easier to identify common techniques and comparisons. Additionally, the type of images considered by each approach (i.e., images from the: visible, infrared, multispectral, hyperspectral bands) together with the strategy used to generate ground truth data (i.e., real and synthetic images) are reviewed. Finally, conclusions highlighting future needs and challenges are presented.  
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  Notes MSIAU; 600.130; 600.122 Approved no  
  Call Number Admin @ si @ VSM2021 Serial 3576  
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Author Eduardo Aguilar; Bhalaji Nagarajan; Beatriz Remeseiro; Petia Radeva edit  doi
openurl 
  Title Bayesian deep learning for semantic segmentation of food images Type Journal Article
  Year 2022 Publication (down) Computers and Electrical Engineering Abbreviated Journal CEE  
  Volume 103 Issue Pages 108380  
  Keywords Deep learning; Uncertainty quantification; Bayesian inference; Image segmentation; Food analysis  
  Abstract Deep learning has provided promising results in various applications; however, algorithms tend to be overconfident in their predictions, even though they may be entirely wrong. Particularly for critical applications, the model should provide answers only when it is very sure of them. This article presents a Bayesian version of two different state-of-the-art semantic segmentation methods to perform multi-class segmentation of foods and estimate the uncertainty about the given predictions. The proposed methods were evaluated on three public pixel-annotated food datasets. As a result, we can conclude that Bayesian methods improve the performance achieved by the baseline architectures and, in addition, provide information to improve decision-making. Furthermore, based on the extracted uncertainty map, we proposed three measures to rank the images according to the degree of noisy annotations they contained. Note that the top 135 images ranked by one of these measures include more than half of the worst-labeled food images.  
  Address October 2022  
  Corporate Author Thesis  
  Publisher Science Direct Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes MILAB Approved no  
  Call Number Admin @ si @ ANR2022 Serial 3763  
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Author L. Calvet; A. Ferrer; M. Gomes; A. Juan; David Masip edit   pdf
doi  openurl
  Title Combining Statistical Learning with Metaheuristics for the Multi-Depot Vehicle Routing Problem with Market Segmentation Type Journal Article
  Year 2016 Publication (down) Computers & Industrial Engineering Abbreviated Journal CIE  
  Volume 94 Issue Pages 93-104  
  Keywords Multi-Depot Vehicle Routing Problem; market segmentation applications; hybrid algorithms; statistical learning  
  Abstract In real-life logistics and distribution activities it is usual to face situations in which the distribution of goods has to be made from multiple warehouses or depots to the nal customers. This problem is known as the Multi-Depot Vehicle Routing Problem (MDVRP), and it typically includes two sequential and correlated stages: (a) the assignment map of customers to depots, and (b) the corresponding design of the distribution routes. Most of the existing work in the literature has focused on minimizing distance-based distribution costs while satisfying a number of capacity constraints. However, no attention has been given so far to potential variations in demands due to the tness of the customerdepot mapping in the case of heterogeneous depots. In this paper, we consider this realistic version of the problem in which the depots are heterogeneous in terms of their commercial o er and customers show di erent willingness to consume depending on how well the assigned depot ts their preferences. Thus, we assume that di erent customer-depot assignment maps will lead to di erent customer-expenditure levels. As a consequence, market-segmentation strategiesneed to be considered in order to increase sales and total income while accounting for the distribution costs. To solve this extension of the MDVRP, we propose a hybrid approach that combines statistical learning techniques with a metaheuristic framework. First, a set of predictive models is generated from historical data. These statistical models allow estimating the demand of any customer depending on the assigned depot. Then, the estimated expenditure of each customer is included as part of an enriched objective function as a way to better guide the stochastic local search inside the metaheuristic framework. A set of computational experiments contribute to illustrate our approach and how the extended MDVRP considered here di ers in terms of the proposed solutions from the traditional one.  
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  Publisher PERGAMON-ELSEVIER SCIENCE LTD Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title CIE  
  Series Volume Series Issue Edition  
  ISSN 0360-8352 ISBN Medium  
  Area Expedition Conference  
  Notes OR;MV; Approved no  
  Call Number Admin @ si @ CFG2016 Serial 2749  
Permanent link to this record
 

 
Author Egils Avots; M. Daneshmanda; Andres Traumann; Sergio Escalera; G. Anbarjafaria edit   pdf
doi  openurl
  Title Automatic garment retexturing based on infrared information Type Journal Article
  Year 2016 Publication (down) Computers & Graphics Abbreviated Journal CG  
  Volume 59 Issue Pages 28-38  
  Keywords Garment Retexturing; Texture Mapping; Infrared Images; RGB-D Acquisition Devices; Shading  
  Abstract This paper introduces a new automatic technique for garment retexturing using a single static image along with the depth and infrared information obtained using the Microsoft Kinect II as the RGB-D acquisition device. First, the garment is segmented out from the image using either the Breadth-First Search algorithm or the semi-automatic procedure provided by the GrabCut method. Then texture domain coordinates are computed for each pixel belonging to the garment using normalised 3D information. Afterwards, shading is applied to the new colours from the texture image. As the main contribution of the proposed method, the latter information is obtained based on extracting a linear map transforming the colour present on the infrared image to that of the RGB colour channels. One of the most important impacts of this strategy is that the resulting retexturing algorithm is colour-, pattern- and lighting-invariant. The experimental results show that it can be used to produce realistic representations, which is substantiated through implementing it under various experimentation scenarios, involving varying lighting intensities and directions. Successful results are accomplished also on video sequences, as well as on images of subjects taking different poses. Based on the Mean Opinion Score analysis conducted on many randomly chosen users, it has been shown to produce more realistic-looking results compared to the existing state-of-the-art methods suggested in the literature. From a wide perspective, the proposed method can be used for retexturing all sorts of segmented surfaces, although the focus of this study is on garment retexturing, and the investigation of the configurations is steered accordingly, since the experiments target an application in the context of virtual fitting rooms.  
  Address  
  Corporate Author Thesis  
  Publisher Elsevier Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes HuPBA;MILAB; Approved no  
  Call Number Admin @ si @ ADT2016 Serial 2759  
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Author Oscar Argudo; Marc Comino; Antonio Chica; Carlos Andujar; Felipe Lumbreras edit  url
openurl 
  Title Segmentation of aerial images for plausible detail synthesis Type Journal Article
  Year 2018 Publication (down) Computers & Graphics Abbreviated Journal CG  
  Volume 71 Issue Pages 23-34  
  Keywords Terrain editing; Detail synthesis; Vegetation synthesis; Terrain rendering; Image segmentation  
  Abstract The visual enrichment of digital terrain models with plausible synthetic detail requires the segmentation of aerial images into a suitable collection of categories. In this paper we present a complete pipeline for segmenting high-resolution aerial images into a user-defined set of categories distinguishing e.g. terrain, sand, snow, water, and different types of vegetation. This segmentation-for-synthesis problem implies that per-pixel categories must be established according to the algorithms chosen for rendering the synthetic detail. This precludes the definition of a universal set of labels and hinders the construction of large training sets. Since artists might choose to add new categories on the fly, the whole pipeline must be robust against unbalanced datasets, and fast on both training and inference. Under these constraints, we analyze the contribution of common per-pixel descriptors, and compare the performance of state-of-the-art supervised learning algorithms. We report the findings of two user studies. The first one was conducted to analyze human accuracy when manually labeling aerial images. The second user study compares detailed terrains built using different segmentation strategies, including official land cover maps. These studies demonstrate that our approach can be used to turn digital elevation models into fully-featured, detailed terrains with minimal authoring efforts.  
  Address  
  Corporate Author Thesis  
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  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0097-8493 ISBN Medium  
  Area Expedition Conference  
  Notes ADAS; 600.086; 600.118 Approved no  
  Call Number Admin @ si @ ACC2018 Serial 3147  
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Author Simone Balocco; Carlo Gatta; Francesco Ciompi; A. Wahle; Petia Radeva; S. Carlier; G. Unal; E. Sanidas; F. Mauri; X. Carillo; T. Kovarnik; C. Wang; H. Chen; T. P. Exarchos; D. I. Fotiadis; F. Destrempes; G. Cloutier; Oriol Pujol; Marina Alberti; E. G. Mendizabal-Ruiz; M. Rivera; T. Aksoy; R. W. Downe; I. A. Kakadiaris edit   pdf
doi  openurl
  Title Standardized evaluation methodology and reference database for evaluating IVUS image segmentation Type Journal Article
  Year 2014 Publication (down) Computerized Medical Imaging and Graphics Abbreviated Journal CMIG  
  Volume 38 Issue 2 Pages 70-90  
  Keywords IVUS (intravascular ultrasound); Evaluation framework; Algorithm comparison; Image segmentation  
  Abstract This paper describes an evaluation framework that allows a standardized and quantitative comparison of IVUS lumen and media segmentation algorithms. This framework has been introduced at the MICCAI 2011 Computing and Visualization for (Intra)Vascular Imaging (CVII) workshop, comparing the results of eight teams that participated.
We describe the available data-base comprising of multi-center, multi-vendor and multi-frequency IVUS datasets, their acquisition, the creation of the reference standard and the evaluation measures. The approaches address segmentation of the lumen, the media, or both borders; semi- or fully-automatic operation; and 2-D vs. 3-D methodology. Three performance measures for quantitative analysis have
been proposed. The results of the evaluation indicate that segmentation of the vessel lumen and media is possible with an accuracy that is comparable to manual annotation when semi-automatic methods are used, as well as encouraging results can be obtained also in case of fully-automatic segmentation. The analysis performed in this paper also highlights the challenges in IVUS segmentation that remains to be
solved.
 
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  Notes MILAB; LAMP; HuPBA; 600.046; 600.063; 600.079 Approved no  
  Call Number Admin @ si @ BGC2013 Serial 2314  
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Author Laura Igual; Joan Carles Soliva; Sergio Escalera; Roger Gimeno; Oscar Vilarroya; Petia Radeva edit   pdf
url  doi
openurl 
  Title Automatic Brain Caudate Nuclei Segmentation and Classification in Diagnostic of Attention-Deficit/Hyperactivity Disorder Type Journal Article
  Year 2012 Publication (down) Computerized Medical Imaging and Graphics Abbreviated Journal CMIG  
  Volume 36 Issue 8 Pages 591-600  
  Keywords Automatic caudate segmentation; Attention-Deficit/Hyperactivity Disorder; Diagnostic test; Machine learning; Decision stumps; Dissociated dipoles  
  Abstract We present a fully automatic diagnostic imaging test for Attention-Deficit/Hyperactivity Disorder diagnosis assistance based on previously found evidences of caudate nucleus volumetric abnormalities. The proposed method consists of different steps: a new automatic method for external and internal segmentation of caudate based on Machine Learning methodologies; the definition of a set of new volume relation features, 3D Dissociated Dipoles, used for caudate representation and classification. We separately validate the contributions using real data from a pediatric population and show precise internal caudate segmentation and discrimination power of the diagnostic test, showing significant performance improvements in comparison to other state-of-the-art methods.  
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  Notes OR; HuPBA; MILAB Approved no  
  Call Number Admin @ si @ ISE2012 Serial 2143  
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Author Michal Drozdzal; Santiago Segui; Carolina Malagelada; Fernando Azpiroz; Petia Radeva edit   pdf
doi  openurl
  Title Adaptable image cuts for motility inspection using WCE Type Journal Article
  Year 2013 Publication (down) Computerized Medical Imaging and Graphics Abbreviated Journal CMIG  
  Volume 37 Issue 1 Pages 72-80  
  Keywords  
  Abstract The Wireless Capsule Endoscopy (WCE) technology allows the visualization of the whole small intestine tract. Since the capsule is freely moving, mainly by the means of peristalsis, the data acquired during the study gives a lot of information about the intestinal motility. However, due to: (1) huge amount of frames, (2) complex intestinal scene appearance and (3) intestinal dynamics that make difficult the visualization of the small intestine physiological phenomena, the analysis of the WCE data requires computer-aided systems to speed up the analysis. In this paper, we propose an efficient algorithm for building a novel representation of the WCE video data, optimal for motility analysis and inspection. The algorithm transforms the 3D video data into 2D longitudinal view by choosing the most informative, from the intestinal motility point of view, part of each frame. This step maximizes the lumen visibility in its longitudinal extension. The task of finding “the best longitudinal view” has been defined as a cost function optimization problem which global minimum is obtained by using Dynamic Programming. Validation on both synthetic data and WCE data shows that the adaptive longitudinal view is a good alternative to the traditional motility analysis done by video analysis. The proposed novel data representation a new, holistic insight into the small intestine motility, allowing to easily define and analyze motility events that are difficult to spot by analyzing WCE video. Moreover, the visual inspection of small intestine motility is 4 times faster then by means of video skimming of the WCE.  
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  Notes MILAB; OR; 600.046; 605.203 Approved no  
  Call Number Admin @ si @ DSM2012 Serial 2151  
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Author Simeon Petkov; Xavier Carrillo; Petia Radeva; Carlo Gatta edit   pdf
doi  openurl
  Title Diaphragm border detection in coronary X-ray angiographies: New method and applications Type Journal Article
  Year 2014 Publication (down) Computerized Medical Imaging and Graphics Abbreviated Journal CMIG  
  Volume 38 Issue 4 Pages 296-305  
  Keywords  
  Abstract X-ray angiography is widely used in cardiac disease diagnosis during or prior to intravascular interventions. The diaphragm motion and the heart beating induce gray-level changes, which are one of the main obstacles in quantitative analysis of myocardial perfusion. In this paper we focus on detecting the diaphragm border in both single images or whole X-ray angiography sequences. We show that the proposed method outperforms state of the art approaches. We extend a previous publicly available data set, adding new ground truth data. We also compose another set of more challenging images, thus having two separate data sets of increasing difficulty. Finally, we show three applications of our method: (1) a strategy to reduce false positives in vessel enhanced images; (2) a digital diaphragm removal algorithm; (3) an improvement in Myocardial Blush Grade semi-automatic estimation.  
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  Notes MILAB; LAMP; 600.079 Approved no  
  Call Number Admin @ si @ PCR2014 Serial 2468  
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Author Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Debora Gil; Cristina Rodriguez de Miguel; Fernando Vilariño edit   pdf
doi  openurl
  Title WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians Type Journal Article
  Year 2015 Publication (down) Computerized Medical Imaging and Graphics Abbreviated Journal CMIG  
  Volume 43 Issue Pages 99-111  
  Keywords Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection  
  Abstract We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice.  
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  Series Volume Series Issue Edition  
  ISSN 0895-6111 ISBN Medium  
  Area Expedition Conference  
  Notes MV; IAM; 600.047; 600.060; 600.075;SIAI Approved no  
  Call Number Admin @ si @ BSF2015 Serial 2609  
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