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	Author	Marina Alberti; Simone Balocco; Xavier Carrillo; J. Mauri; Petia Radeva
	Title	Automatic non-rigid temporal alignment of IVUS sequences: method and quantitative validation			Type	Journal Article
	Year	2013	Publication	Ultrasound in Medicine and Biology	Abbreviated Journal	UMB
	Volume	39	Issue	9	Pages	1698-712
	Keywords	Intravascular ultrasound; Dynamic time warping; Non-rigid alignment; Sequence matching; Partial overlapping strategy
	Abstract	Clinical studies on atherosclerosis regression/progression performed by intravascular ultrasound analysis would benefit from accurate alignment of sequences of the same patient before and after clinical interventions and at follow-up. In this article, a methodology for automatic alignment of intravascular ultrasound sequences based on the dynamic time warping technique is proposed. The non-rigid alignment is adapted to the specific task by applying it to multidimensional signals describing the morphologic content of the vessel. Moreover, dynamic time warping is embedded into a framework comprising a strategy to address partial overlapping between acquisitions and a term that regularizes non-physiologic temporal compression/expansion of the sequences. Extensive validation is performed on both synthetic and in vivo data. The proposed method reaches alignment errors of approximately 0.43 mm for pairs of sequences acquired during the same intervention phase and 0.77 mm for pairs of sequences acquired at successive intervention stages.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB			Approved	no
	Call Number	Admin @ si @ ABC2013			Serial	2313
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	Author	Miguel Oliveira; Victor Santos; Angel Sappa
	Title	Multimodal Inverse Perspective Mapping			Type	Journal Article
	Year	2015	Publication	Information Fusion	Abbreviated Journal	IF
	Volume	24	Issue		Pages	108–121
	Keywords	Inverse perspective mapping; Multimodal sensor fusion; Intelligent vehicles
	Abstract	Over the past years, inverse perspective mapping has been successfully applied to several problems in the field of Intelligent Transportation Systems. In brief, the method consists of mapping images to a new coordinate system where perspective effects are removed. The removal of perspective associated effects facilitates road and obstacle detection and also assists in free space estimation. There is, however, a significant limitation in the inverse perspective mapping: the presence of obstacles on the road disrupts the effectiveness of the mapping. The current paper proposes a robust solution based on the use of multimodal sensor fusion. Data from a laser range finder is fused with images from the cameras, so that the mapping is not computed in the regions where obstacles are present. As shown in the results, this considerably improves the effectiveness of the algorithm and reduces computation time when compared with the classical inverse perspective mapping. Furthermore, the proposed approach is also able to cope with several cameras with different lenses or image resolutions, as well as dynamic viewpoints.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.055; 600.076			Approved	no
	Call Number	Admin @ si @ OSS2015c			Serial	2532
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	Author	Simone Balocco; Carlo Gatta; Francesco Ciompi; A. Wahle; Petia Radeva; S. Carlier; G. Unal; E. Sanidas; J. Mauri; X. Carillo; T. Kovarnik; C. Wang; H. Chen; T. P. Exarchos; D. I. Fotiadis; F. Destrempes; G. Cloutier; Oriol Pujol; Marina Alberti; E. G. Mendizabal-Ruiz; M. Rivera; T. Aksoy; R. W. Downe; I. A. Kakadiaris
	Title	Standardized evaluation methodology and reference database for evaluating IVUS image segmentation			Type	Journal Article
	Year	2014	Publication	Computerized Medical Imaging and Graphics	Abbreviated Journal	CMIG
	Volume	38	Issue	2	Pages	70-90
	Keywords	IVUS (intravascular ultrasound); Evaluation framework; Algorithm comparison; Image segmentation
	Abstract	This paper describes an evaluation framework that allows a standardized and quantitative comparison of IVUS lumen and media segmentation algorithms. This framework has been introduced at the MICCAI 2011 Computing and Visualization for (Intra)Vascular Imaging (CVII) workshop, comparing the results of eight teams that participated. We describe the available data-base comprising of multi-center, multi-vendor and multi-frequency IVUS datasets, their acquisition, the creation of the reference standard and the evaluation measures. The approaches address segmentation of the lumen, the media, or both borders; semi- or fully-automatic operation; and 2-D vs. 3-D methodology. Three performance measures for quantitative analysis have been proposed. The results of the evaluation indicate that segmentation of the vessel lumen and media is possible with an accuracy that is comparable to manual annotation when semi-automatic methods are used, as well as encouraging results can be obtained also in case of fully-automatic segmentation. The analysis performed in this paper also highlights the challenges in IVUS segmentation that remains to be solved.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB; LAMP; HuPBA; 600.046; 600.063; 600.079			Approved	no
	Call Number	Admin @ si @ BGC2013			Serial	2314
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	Author	Simone Balocco; Francesco Ciompi; Juan Rigla; Xavier Carrillo; J. Mauri; Petia Radeva
	Title	Assessment of intracoronary stent location and extension in intravascular ultrasound sequences			Type	Journal Article
	Year	2019	Publication	Medical Physics	Abbreviated Journal	MEDPHYS
	Volume	46	Issue	2	Pages	484-493
	Keywords	IVUS; malapposition; stent; ultrasound
	Abstract	PURPOSE: An intraluminal coronary stent is a metal scaffold deployed in a stenotic artery during percutaneous coronary intervention (PCI). In order to have an effective deployment, a stent should be optimally placed with regard to anatomical structures such as bifurcations and stenoses. Intravascular ultrasound (IVUS) is a catheter-based imaging technique generally used for PCI guiding and assessing the correct placement of the stent. A novel approach that automatically detects the boundaries and the position of the stent along the IVUS pullback is presented. Such a technique aims at optimizing the stent deployment. METHODS: The method requires the identification of the stable frames of the sequence and the reliable detection of stent struts. Using these data, a measure of likelihood for a frame to contain a stent is computed. Then, a robust binary representation of the presence of the stent in the pullback is obtained applying an iterative and multiscale quantization of the signal to symbols using the Symbolic Aggregate approXimation algorithm. RESULTS: The technique was extensively validated on a set of 103 IVUS of sequences of in vivo coronary arteries containing metallic and bioabsorbable stents acquired through an international multicentric collaboration across five clinical centers. The method was able to detect the stent position with an overall F-measure of 86.4%, a Jaccard index score of 75% and a mean distance of 2.5 mm from manually annotated stent boundaries, and in bioabsorbable stents with an overall F-measure of 88.6%, a Jaccard score of 77.7 and a mean distance of 1.5 mm from manually annotated stent boundaries. Additionally, a map indicating the distance between the lumen and the stent along the pullback is created in order to show the angular sectors of the sequence in which the malapposition is present. CONCLUSIONS: Results obtained comparing the automatic results vs the manual annotation of two observers shows that the method approaches the interobserver variability. Similar performances are obtained on both metallic and bioabsorbable stents, showing the flexibility and robustness of the method.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB; no proj			Approved	no
	Call Number	Admin @ si @ BCR2019			Serial	3231
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	Author	David Roche; Debora Gil; Jesus Giraldo
	Title	Mathematical modeling of G protein-coupled receptor function: What can we learn from empirical and mechanistic models?			Type	Book Chapter
	Year	2014	Publication	G Protein-Coupled Receptors – Modeling and Simulation Advances in Experimental Medicine and Biology	Abbreviated Journal
	Volume	796	Issue	3	Pages	159-181
	Keywords	β-arrestin; biased agonism; curve fitting; empirical modeling; evolutionary algorithm; functional selectivity; G protein; GPCR; Hill coefficient; intrinsic efficacy; inverse agonism; mathematical modeling; mechanistic modeling; operational model; parameter optimization; receptor dimer; receptor oligomerization; receptor constitutive activity; signal transduction; two-state model
	Abstract	Empirical and mechanistic models differ in their approaches to the analysis of pharmacological effect. Whereas the parameters of the former are not physical constants those of the latter embody the nature, often complex, of biology. Empirical models are exclusively used for curve fitting, merely to characterize the shape of the E/[A] curves. Mechanistic models, on the contrary, enable the examination of mechanistic hypotheses by parameter simulation. Regretfully, the many parameters that mechanistic models may include can represent a great difficulty for curve fitting, representing, thus, a challenge for computational method development. In the present study some empirical and mechanistic models are shown and the connections, which may appear in a number of cases between them, are analyzed from the curves they yield. It may be concluded that systematic and careful curve shape analysis can be extremely useful for the understanding of receptor function, ligand classification and drug discovery, thus providing a common language for the communication between pharmacologists and medicinal chemists.
	Address
	Corporate Author				Thesis
	Publisher	Springer Netherlands	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0065-2598	ISBN	978-94-007-7422-3	Medium
	Area		Expedition		Conference
	Notes	IAM; 600.075			Approved	no
	Call Number	IAM @ iam @ RGG2014			Serial	2197
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	Author	Jaume Garcia; Debora Gil; Sandra Pujades; Francesc Carreras
	Title	A Variational Framework for Assessment of the Left Ventricle Motion			Type	Journal Article
	Year	2008	Publication	International Journal Mathematical Modelling of Natural Phenomena	Abbreviated Journal
	Volume	3	Issue	6	Pages	76-100
	Keywords	Key words: Left Ventricle Dynamics, Ventricular Torsion, Tagged Magnetic Resonance, Motion Tracking, Variational Framework, Gabor Transform.
	Abstract	Impairment of left ventricular contractility due to cardiovascular diseases is reflected in left ventricle (LV) motion patterns. An abnormal change of torsion or long axis shortening LV values can help with the diagnosis and follow-up of LV dysfunction. Tagged Magnetic Resonance (TMR) is a widely spread medical imaging modality that allows estimation of the myocardial tissue local deformation. In this work, we introduce a novel variational framework for extracting the left ventricle dynamics from TMR sequences. A bi-dimensional representation space of TMR images given by Gabor filter banks is defined. Tracking of the phases of the Gabor response is combined using a variational framework which regularizes the deformation field just at areas where the Gabor amplitude drops, while restoring the underlying motion otherwise. The clinical applicability of the proposed method is illustrated by extracting normality models of the ventricular torsion from 19 healthy subjects.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	IAM @ iam @ GGC2008a			Serial	1058
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	Author	Francisco Javier Orozco; Xavier Roca; Jordi Gonzalez
	Title	Real-Time Gaze Tracking with Appearance-Based Models			Type	Journal Article
	Year	2008	Publication	Machine Vision Applications	Abbreviated Journal	MVAP
	Volume	20	Issue	6	Pages	353-364
	Keywords	Keywords Eyelid and iris tracking, Appearance models, Blinking, Iris saccade, Real-time gaze tracking
	Abstract	Psychological evidence has emphasized the importance of eye gaze analysis in human computer interaction and emotion interpretation. To this end, current image analysis algorithms take into consideration eye-lid and iris motion detection using colour information and edge detectors. However, eye movement is fast and and hence difficult to use to obtain a precise and robust tracking. Instead, our method proposed to describe eyelid and iris movements as continuous variables using appearance-based tracking. This approach combines the strengths of adaptive appearance models, optimization methods and backtracking techniques.Thus, in the proposed method textures are learned on-line from near frontal images and illumination changes, occlusions and fast movements are managed. The method achieves real-time performance by combining two appearance-based trackers to a backtracking algorithm for eyelid estimation and another for iris estimation. These contributions represent a significant advance towards a reliable gaze motion description for HCI and expression analysis, where the strength of complementary methodologies are combined to avoid using high quality images, colour information, texture training, camera settings and other time-consuming processes.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ISE			Approved	no
	Call Number	ISE @ ise @ ORG2008			Serial	972
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	Author	Joan Serrat; Felipe Lumbreras; Francisco Blanco; Manuel Valiente; Montserrat Lopez-Mesas
	Title	myStone: A system for automatic kidney stone classification			Type	Journal Article
	Year	2017	Publication	Expert Systems with Applications	Abbreviated Journal	ESA
	Volume	89	Issue		Pages	41-51
	Keywords	Kidney stone; Optical device; Computer vision; Image classification
	Abstract	Kidney stone formation is a common disease and the incidence rate is constantly increasing worldwide. It has been shown that the classification of kidney stones can lead to an important reduction of the recurrence rate. The classification of kidney stones by human experts on the basis of certain visual color and texture features is one of the most employed techniques. However, the knowledge of how to analyze kidney stones is not widespread, and the experts learn only after being trained on a large number of samples of the different classes. In this paper we describe a new device specifically designed for capturing images of expelled kidney stones, and a method to learn and apply the experts knowledge with regard to their classification. We show that with off the shelf components, a carefully selected set of features and a state of the art classifier it is possible to automate this difficult task to a good degree. We report results on a collection of 454 kidney stones, achieving an overall accuracy of 63% for a set of eight classes covering almost all of the kidney stones taxonomy. Moreover, for more than 80% of samples the real class is the first or the second most probable class according to the system, being then the patient recommendations for the two top classes similar. This is the first attempt towards the automatic visual classification of kidney stones, and based on the current results we foresee better accuracies with the increase of the dataset size.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; MSIAU; 603.046; 600.122; 600.118			Approved	no
	Call Number	Admin @ si @ SLB2017			Serial	3026
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	Author	Antonio Lopez; Joan Serrat; J. Saludes; Cristina Cañero; Felipe Lumbreras; T. Graf
	Title	Ridgeness for Detecting Lane Markings			Type	Miscellaneous
	Year	2005	Publication	2nd International Workshop on Intelligent Transportation Systems (WIT2005), Conference Proceedings (Sponsored by the IEEE Communication Society, Germany Chapter)	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	lane markings
	Abstract
	Address	Hamburg (Germany)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS			Approved	no
	Call Number	ADAS @ adas @ LSS2005			Serial	548
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	Author	Antonio Lopez; Cristina Cañero; Joan Serrat; J. Saludes; Felipe Lumbreras; T. Graf
	Title	Detection of lane markings based on ridgeness and RANSAC			Type	Miscellaneous
	Year	2005	Publication	Proceedings of the 8th International IEEE Conference on Intelligent Transportation Systems, 733–738	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	lane markings
	Abstract
	Address	Vienna (Austria)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS			Approved	no
	Call Number	ADAS @ adas @ LCS2005			Serial	588
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	Author	Antonio Lopez; Joan Serrat; Cristina Cañero; Felipe Lumbreras
	Title	Robust Lane Lines Detection and Quantitative Assessment			Type	Conference Article
	Year	2007	Publication	3rd Iberian Conference on Pattern Recognition and Image Analysis	Abbreviated Journal
	Volume	4477	Issue		Pages	274–281
	Keywords	lane markings
	Abstract
	Address	Girona (Spain)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor	J. Marti et al
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	IbPRIA
	Notes	ADAS			Approved	no
	Call Number	ADAS @ adas @ LSC2007			Serial	881
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	Author	Antonio Lopez; Joan Serrat; Cristina Cañero; Felipe Lumbreras; T. Graf
	Title	Robust lane markings detection and road geometry computation			Type	Journal Article
	Year	2010	Publication	International Journal of Automotive Technology	Abbreviated Journal	IJAT
	Volume	11	Issue	3	Pages	395–407
	Keywords	lane markings
	Abstract	Detection of lane markings based on a camera sensor can be a low-cost solution to lane departure and curve-over-speed warnings. A number of methods and implementations have been reported in the literature. However, reliable detection is still an issue because of cast shadows, worn and occluded markings, variable ambient lighting conditions, for example. We focus on increasing detection reliability in two ways. First, we employed an image feature other than the commonly used edges: ridges, which we claim addresses this problem better. Second, we adapted RANSAC, a generic robust estimation method, to fit a parametric model of a pair of lane lines to the image features, based on both ridgeness and ridge orientation. In addition, the model was fitted for the left and right lane lines simultaneously to enforce a consistent result. Four measures of interest for driver assistance applications were directly computed from the fitted parametric model at each frame: lane width, lane curvature, and vehicle yaw angle and lateral offset with regard the lane medial axis. We qualitatively assessed our method in video sequences captured on several road types and under very different lighting conditions. We also quantitatively assessed it on synthetic but realistic video sequences for which road geometry and vehicle trajectory ground truth are known.
	Address
	Corporate Author				Thesis
	Publisher	The Korean Society of Automotive Engineers	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1229-9138	ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS			Approved	no
	Call Number	ADAS @ adas @ LSC2010			Serial	1300
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	Author	Antoni Gurgui; Debora Gil; Enric Marti; Vicente Grau
	Title	Left-Ventricle Basal Region Constrained Parametric Mapping to Unitary Domain			Type	Conference Article
	Year	2016	Publication	7th International Workshop on Statistical Atlases & Computational Modelling of the Heart	Abbreviated Journal
	Volume	10124	Issue		Pages	163-171
	Keywords	Laplacian; Constrained maps; Parameterization; Basal ring
	Abstract	Due to its complex geometry, the basal ring is often omitted when putting different heart geometries into correspondence. In this paper, we present the first results on a new mapping of the left ventricle basal rings onto a normalized coordinate system using a fold-over free approach to the solution to the Laplacian. To guarantee correspondences between different basal rings, we imposed some internal constrained positions at anatomical landmarks in the normalized coordinate system. To prevent internal fold-overs, constraints are handled by cutting the volume into regions defined by anatomical features and mapping each piece of the volume separately. Initial results presented in this paper indicate that our method is able to handle internal constrains without introducing fold-overs and thus guarantees one-to-one mappings between different basal ring geometries.
	Address	Athens; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	STACOM
	Notes	IAM;			Approved	no
	Call Number	Admin @ si @ GGM2016			Serial	2884
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	Author	V. Poulain d'Andecy; Emmanuel Hartmann; Marçal Rusiñol
	Title	Field Extraction by hybrid incremental and a-priori structural templates			Type	Conference Article
	Year	2018	Publication	13th IAPR International Workshop on Document Analysis Systems	Abbreviated Journal
	Volume		Issue		Pages	251 - 256
	Keywords	Layout Analysis; information extraction; incremental learning
	Abstract	In this paper, we present an incremental framework for extracting information fields from administrative documents. First, we demonstrate some limits of the existing state-of-the-art methods such as the delay of the system efficiency. This is a concern in industrial context when we have only few samples of each document class. Based on this analysis, we propose a hybrid system combining incremental learning by means of itf-df statistics and a-priori generic models. We report in the experimental section our results obtained with a dataset of real invoices.
	Address	Viena; Austria; April 2018
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	DAS
	Notes	DAG; 600.084; 600.129; 600.121			Approved	no
	Call Number	Admin @ si @ PHR2018			Serial	3106
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	Author	Huamin Ren; Nattiya Kanhabua; Andreas Mogelmose; Weifeng Liu; Kaustubh Kulkarni; Sergio Escalera; Xavier Baro; Thomas B. Moeslund
	Title	Back-dropout Transfer Learning for Action Recognition			Type	Journal Article
	Year	2018	Publication	IET Computer Vision	Abbreviated Journal	IETCV
	Volume	12	Issue	4	Pages	484-491
	Keywords	Learning (artificial intelligence); Pattern Recognition
	Abstract	Transfer learning aims at adapting a model learned from source dataset to target dataset. It is a beneficial approach especially when annotating on the target dataset is expensive or infeasible. Transfer learning has demonstrated its powerful learning capabilities in various vision tasks. Despite transfer learning being a promising approach, it is still an open question how to adapt the model learned from the source dataset to the target dataset. One big challenge is to prevent the impact of category bias on classification performance. Dataset bias exists when two images from the same category, but from different datasets, are not classified as the same. To address this problem, a transfer learning algorithm has been proposed, called negative back-dropout transfer learning (NB-TL), which utilizes images that have been misclassified and further performs back-dropout strategy on them to penalize errors. Experimental results demonstrate the effectiveness of the proposed algorithm. In particular, the authors evaluate the performance of the proposed NB-TL algorithm on UCF 101 action recognition dataset, achieving 88.9% recognition rate.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HUPBA; no proj			Approved	no
	Call Number	Admin @ si @ RKM2018			Serial	3071
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