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Carles Sanchez, F. Javier Sanchez, Antoni Rosell, & Debora Gil. (2012). An illumination model of the trachea appearance in videobronchoscopy images. In Image Analysis and Recognition (Vol. 7325, pp. 313–320). LNCS. Springer Berlin Heidelberg.
Abstract: Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
Keywords: Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
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Sergio Vera, Miguel Angel Gonzalez Ballester, & Debora Gil. (2012). Optimal Medial Surface Generation for Anatomical Volume Representations. In MichaelW. David and Vannier H. and H. Yoshida (Ed.), Abdominal Imaging. Computational and Clinical Applications (Vol. 7601, pp. 265–273). Lecture Notes in Computer Science. Springer Berlin Heidelberg.
Abstract: Medial representations are a widely used technique in abdominal organ shape representation and parametrization. Those methods require good medial manifolds as a starting point. Any medial
surface used to parametrize a volume should be simple enough to allow an easy manipulation and complete enough to allow an accurate reconstruction of the volume. Obtaining good quality medial
surfaces is still a problem with current iterative thinning methods. This forces the usage of generic, pre-calculated medial templates that are adapted to the final shape at the cost of a drop in volume reconstruction.
This paper describes an operator for generation of medial structures that generates clean and complete manifolds well suited for their further use in medial representations of abdominal organ volumes. While being simpler than thinning surfaces, experiments show its high performance in volume reconstruction and preservation of medial surface main branching topology.
Keywords: Medial surface representation; volume reconstruction
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Simone Balocco, Carlo Gatta, Marina Alberti, Xavier Carrillo, Juan Rigla, & Petia Radeva. (2012). Relation between plaque type, plaque thickness, blood shear stress and plaque stress in coronary arteries assessed by X-ray Angiography and Intravascular Ultrasound. MEDPHYS - Medical Physics, 39(12), 7430–7445.
Abstract: PMID 23231293
PURPOSE:
Atheromatic plaque progression is affected, among others phenomena, by biomechanical, biochemical, and physiological factors. In this paper, the authors introduce a novel framework able to provide both morphological (vessel radius, plaque thickness, and type) and biomechanical (wall shear stress and Von Mises stress) indices of coronary arteries.
METHODS:
First, the approach reconstructs the three-dimensional morphology of the vessel from intravascular ultrasound (IVUS) and Angiographic sequences, requiring minimal user interaction. Then, a computational pipeline allows to automatically assess fluid-dynamic and mechanical indices. Ten coronary arteries are analyzed illustrating the capabilities of the tool and confirming previous technical and clinical observations.
RESULTS:
The relations between the arterial indices obtained by IVUS measurement and simulations have been quantitatively analyzed along the whole surface of the artery, extending the analysis of the coronary arteries shown in previous state of the art studies. Additionally, for the first time in the literature, the framework allows the computation of the membrane stresses using a simplified mechanical model of the arterial wall.
CONCLUSIONS:
Circumferentially (within a given frame), statistical analysis shows an inverse relation between the wall shear stress and the plaque thickness. At the global level (comparing a frame within the entire vessel), it is observed that heavy plaque accumulations are in general calcified and are located in the areas of the vessel having high wall shear stress. Finally, in their experiments the inverse proportionality between fluid and structural stresses is observed.
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Francesco Ciompi, Oriol Pujol, Carlo Gatta, Marina Alberti, Simone Balocco, Xavier Carrillo, et al. (2012). HoliMab: A Holistic Approach for Media-Adventitia Border Detection in Intravascular Ultrasound. MIA - Medical Image Analysis, 16(6), 1085–1100.
Abstract: We present a fully automatic methodology for the detection of the Media-Adventitia border (MAb) in human coronary artery in Intravascular Ultrasound (IVUS) images. A robust border detection is achieved by means of a holistic interpretation of the detection problem where the target object, i.e. the media layer, is considered as part of the whole vessel in the image and all the relationships between tissues are learnt. A fairly general framework exploiting multi-class tissue characterization as well as contextual information on the morphology and the appearance of the tissues is presented. The methodology is (i) validated through an exhaustive comparison with both Inter-observer variability on two challenging databases and (ii) compared with state-of-the-art methods for the detection of the MAb in IVUS. The obtained averaged values for the mean radial distance and the percentage of area difference are 0.211 mm and 10.1%, respectively. The applicability of the proposed methodology to clinical practice is also discussed.
Keywords: Media–Adventitia border detection; Intravascular ultrasound; Multi-Scale Stacked Sequential Learning; Error-correcting output codes; Holistic segmentation
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Bogdan Raducanu, & D. Gatica-Perez. (2012). Inferring competitive role patterns in reality TV show through nonverbal analysis. MTAP - Multimedia Tools and Applications, 56(1), 207–226.
Abstract: This paper introduces a new facet of social media, namely that depicting social interaction. More concretely, we address this problem from the perspective of nonverbal behavior-based analysis of competitive meetings. For our study, we made use of “The Apprentice” reality TV show, which features a competition for a real, highly paid corporate job. Our analysis is centered around two tasks regarding a person's role in a meeting: predicting the person with the highest status, and predicting the fired candidates. We address this problem by adopting both supervised and unsupervised strategies. The current study was carried out using nonverbal audio cues. Our approach is based only on the nonverbal interaction dynamics during the meeting without relying on the spoken words. The analysis is based on two types of data: individual and relational measures. Results obtained from the analysis of a full season of the show are promising (up to 85.7% of accuracy in the first case and up to 92.8% in the second case). Our approach has been conveniently compared with the Influence Model, demonstrating its superiority.
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Carolina Malagelada, F.De Lorio, Santiago Segui, S. Mendez, Michal Drozdzal, Jordi Vitria, et al. (2012). Functional gut disorders or disordered gut function? Small bowel dysmotility evidenced by an original technique. NEUMOT - Neurogastroenterology & Motility, 24(3), 223–230.
Abstract: JCR Impact Factor 2010: 3.349
Background This study aimed to determine the proportion of cases with abnormal intestinal motility among patients with functional bowel disorders. To this end, we applied an original method, previously developed in our laboratory, for analysis of endoluminal images obtained by capsule endoscopy. This novel technology is based on computer vision and machine learning techniques.
Methods The endoscopic capsule (Pillcam SB1; Given Imaging, Yokneam, Israel) was administered to 80 patients with functional bowel disorders and 70 healthy subjects. Endoluminal image analysis was performed with a computer vision program developed for the evaluation of contractile events (luminal occlusions and radial wrinkles), non-contractile patterns (open tunnel and smooth wall patterns), type of content (secretions, chyme) and motion of wall and contents. Normality range and discrimination of abnormal cases were established by a machine learning technique. Specifically, an iterative classifier (one-class support vector machine) was applied in a random population of 50 healthy subjects as a training set and the remaining subjects (20 healthy subjects and 80 patients) as a test set.
Key Results The classifier identified as abnormal 29% of patients with functional diseases of the bowel (23 of 80), and as normal 97% of healthy subjects (68 of 70) (P < 0.05 by chi-squared test). Patients identified as abnormal clustered in two groups, which exhibited either a hyper- or a hypodynamic motility pattern. The motor behavior was unrelated to clinical features.
Conclusions & Inferences With appropriate methodology, abnormal intestinal motility can be demonstrated in a significant proportion of patients with functional bowel disorders, implying a pathologic disturbance of gut physiology.
Keywords: capsule endoscopy;computer vision analysis;machine learning technique;small bowel motility
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Xavier Otazu. (2012). Perceptual tone-mapping operator based on multiresolution contrast decomposition. In Perception (Vol. 41, 86).
Abstract: Tone-mapping operators (TMO) are used to display high dynamic range(HDR) images in low dynamic range (LDR) displays. Many computational and biologically inspired approaches have been used in the literature, being many of them based on multiresolution decompositions. In this work, a simple two stage model for TMO is presented. The first stage is a novel multiresolution contrast decomposition, which is inspired in a pyramidal contrast decomposition (Peli, 1990 Journal of the Optical Society of America7(10), 2032-2040).
This novel multiresolution decomposition represents the Michelson contrast of the image at different spatial scales. This multiresolution contrast representation, applied on the intensity channel of an opponent colour decomposition, is processed by a non-linear saturating model of V1 neurons (Albrecht et al, 2002 Journal ofNeurophysiology 88(2) 888-913). This saturation model depends on the visual frequency, and it has been modified in order to include information from the extended Contrast Sensitivity Function (e-CSF) (Otazu et al, 2010 Journal ofVision10(12) 5).
A set of HDR images in Radiance RGBE format (from CIS HDR Photographic Survey and Greg Ward database) have been used to test the model, obtaining a set of LDR images. The resulting LDR images do not show the usual halo or color modification artifacts.
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Olivier Penacchio, Laura Dempere-Marco, & Xavier Otazu. (2012). Switching off brightness induction through induction-reversed images. In Perception (Vol. 41, 208).
Abstract: Brightness induction is the modulation of the perceived intensity of an
area by the luminance of surrounding areas. Although V1 is traditionally regarded as
an area mostly responsive to retinal information, neurophysiological evidence
suggests that it may explicitly represent brightness information. In this work, we
investigate possible neural mechanisms underlying brightness induction. To this end,
we consider the model by Z Li (1999 Computation and Neural Systems10187-212)
which is constrained by neurophysiological data and focuses on the part of V1
responsible for contextual influences. This model, which has proven to account for
phenomena such as contour detection and preattentive segmentation, shares with
brightness induction the relevant effect of contextual influences. Importantly, the
input to our network model derives from a complete multiscale and multiorientation
wavelet decomposition, which makes it possible to recover an image reflecting the
perceived luminance and successfully accounts for well known psychophysical
effects for both static and dynamic contexts. By further considering inverse problem
techniques we define induction-reversed images: given a target image, we build an
image whose perceived luminance matches the actual luminance of the original
stimulus, thus effectively canceling out brightness induction effects. We suggest that
induction-reversed images may help remove undesired perceptual effects and can
find potential applications in fields such as radiological image interpretation
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Jordi Roca, C. Alejandro Parraga, & Maria Vanrell. (2012). Predicting categorical colour perception in successive colour constancy. In Perception (Vol. 41, 138).
Abstract: Colour constancy is a perceptual mechanism that seeks to keep the colour of objects relatively stable under an illumination shift. Experiments haveshown that its effects depend on the number of colours present in the scene. We
studied categorical colour changes under different adaptation states, in particular, whether the colour categories seen under a chromatically neutral illuminant are the same after a shift in the chromaticity of the illumination. To do this, we developed the chromatic setting paradigm (2011 Journal of Vision11 349), which is as an extension of achromatic setting to colour categories. The paradigm exploits the ability of subjects to reliably reproduce the most representative examples of each category, adjusting multiple test patches embedded in a coloured Mondrian. Our experiments were run on a CRT monitor (inside a dark room) under various simulated illuminants and restricting the number of colours of the Mondrian background to three, thus weakening the adaptation effect. Our results show a change in the colour categories present before (under neutral illumination) and after adaptation (under coloured illuminants) with a tendency for adapted colours to be less saturated than before adaptation. This behaviour was predicted by a simple
affine matrix model, adjusted to the chromatic setting results.
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Noha Elfiky, Fahad Shahbaz Khan, Joost Van de Weijer, & Jordi Gonzalez. (2012). Discriminative Compact Pyramids for Object and Scene Recognition. PR - Pattern Recognition, 45(4), 1627–1636.
Abstract: Spatial pyramids have been successfully applied to incorporating spatial information into bag-of-words based image representation. However, a major drawback is that it leads to high dimensional image representations. In this paper, we present a novel framework for obtaining compact pyramid representation. First, we investigate the usage of the divisive information theoretic feature clustering (DITC) algorithm in creating a compact pyramid representation. In many cases this method allows us to reduce the size of a high dimensional pyramid representation up to an order of magnitude with little or no loss in accuracy. Furthermore, comparison to clustering based on agglomerative information bottleneck (AIB) shows that our method obtains superior results at significantly lower computational costs. Moreover, we investigate the optimal combination of multiple features in the context of our compact pyramid representation. Finally, experiments show that the method can obtain state-of-the-art results on several challenging data sets.
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Bogdan Raducanu, & Fadi Dornaika. (2012). A Supervised Non-linear Dimensionality Reduction Approach for Manifold Learning. PR - Pattern Recognition, 45(6), 2432–2444.
Abstract: IF= 2.61
IF=2.61 (2010)
In this paper we introduce a novel supervised manifold learning technique called Supervised Laplacian Eigenmaps (S-LE), which makes use of class label information to guide the procedure of non-linear dimensionality reduction by adopting the large margin concept. The graph Laplacian is split into two components: within-class graph and between-class graph to better characterize the discriminant property of the data. Our approach has two important characteristics: (i) it adaptively estimates the local neighborhood surrounding each sample based on data density and similarity and (ii) the objective function simultaneously maximizes the local margin between heterogeneous samples and pushes the homogeneous samples closer to each other.
Our approach has been tested on several challenging face databases and it has been conveniently compared with other linear and non-linear techniques, demonstrating its superiority. Although we have concentrated in this paper on the face recognition problem, the proposed approach could also be applied to other category of objects characterized by large variations in their appearance (such as hand or body pose, for instance.
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Jon Almazan, Alicia Fornes, & Ernest Valveny. (2012). A non-rigid appearance model for shape description and recognition. PR - Pattern Recognition, 45(9), 3105–3113.
Abstract: In this paper we describe a framework to learn a model of shape variability in a set of patterns. The framework is based on the Active Appearance Model (AAM) and permits to combine shape deformations with appearance variability. We have used two modifications of the Blurred Shape Model (BSM) descriptor as basic shape and appearance features to learn the model. These modifications permit to overcome the rigidity of the original BSM, adapting it to the deformations of the shape to be represented. We have applied this framework to representation and classification of handwritten digits and symbols. We show that results of the proposed methodology outperform the original BSM approach.
Keywords: Shape recognition; Deformable models; Shape modeling; Hand-drawn recognition
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Jaume Gibert, Ernest Valveny, & Horst Bunke. (2012). Graph Embedding in Vector Spaces by Node Attribute Statistics. PR - Pattern Recognition, 45(9), 3072–3083.
Abstract: Graph-based representations are of broad use and applicability in pattern recognition. They exhibit, however, a major drawback with regards to the processing tools that are available in their domain. Graphembedding into vectorspaces is a growing field among the structural pattern recognition community which aims at providing a feature vector representation for every graph, and thus enables classical statistical learning machinery to be used on graph-based input patterns. In this work, we propose a novel embedding methodology for graphs with continuous nodeattributes and unattributed edges. The approach presented in this paper is based on statistics of the node labels and the edges between them, based on their similarity to a set of representatives. We specifically deal with an important issue of this methodology, namely, the selection of a suitable set of representatives. In an experimental evaluation, we empirically show the advantages of this novel approach in the context of different classification problems using several databases of graphs.
Keywords: Structural pattern recognition; Graph embedding; Data clustering; Graph classification
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2012). Towards Automatic Polyp Detection with a Polyp Appearance Model. PR - Pattern Recognition, 45(9), 3166–3182.
Abstract: This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.
Keywords: Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot
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Susana Alvarez, & Maria Vanrell. (2012). Texton theory revisited: a bag-of-words approach to combine textons. PR - Pattern Recognition, 45(12), 4312–4325.
Abstract: The aim of this paper is to revisit an old theory of texture perception and
update its computational implementation by extending it to colour. With this in mind we try to capture the optimality of perceptual systems. This is achieved in the proposed approach by sharing well-known early stages of the visual processes and extracting low-dimensional features that perfectly encode adequate properties for a large variety of textures without needing further learning stages. We propose several descriptors in a bag-of-words framework that are derived from different quantisation models on to the feature spaces. Our perceptual features are directly given by the shape and colour attributes of image blobs, which are the textons. In this way we avoid learning visual words and directly build the vocabularies on these lowdimensionaltexton spaces. Main differences between proposed descriptors rely on how co-occurrence of blob attributes is represented in the vocabularies. Our approach overcomes current state-of-art in colour texture description which is proved in several experiments on large texture datasets.
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