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Author Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva edit  doi
openurl 
  Title ROC curves and video analysis optimization in intestinal capsule endoscopy Type (up) Journal Article
  Year 2006 Publication Pattern Recognition Letters Abbreviated Journal PRL  
  Volume 27 Issue 8 Pages 875–881  
  Keywords ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy  
  Abstract Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MILAB;MV;SIAI Approved no  
  Call Number BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006 Serial 647  
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Author Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva edit   pdf
doi  openurl
  Title Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions Type (up) Journal Article
  Year 2010 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI  
  Volume 29 Issue 2 Pages 246-259  
  Keywords  
  Abstract Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions.  
  Address  
  Corporate Author IEEE Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0278-0062 ISBN Medium  
  Area 800 Expedition Conference  
  Notes MILAB;MV;OR;SIAI Approved no  
  Call Number BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 Serial 1281  
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
url  doi
openurl 
  Title Towards Automatic Polyp Detection with a Polyp Appearance Model Type (up) Journal Article
  Year 2012 Publication Pattern Recognition Abbreviated Journal PR  
  Volume 45 Issue 9 Pages 3166-3182  
  Keywords Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot  
  Abstract This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.  
  Address  
  Corporate Author Thesis  
  Publisher Elsevier Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0031-3203 ISBN Medium  
  Area 800 Expedition Conference IbPRIA  
  Notes MV;SIAI Approved no  
  Call Number Admin @ si @ BSV2012; IAM @ iam Serial 1997  
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Author Santiago Segui; Michal Drozdzal; Fernando Vilariño; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria edit   pdf
doi  openurl
  Title Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy Type (up) Journal Article
  Year 2012 Publication IEEE Transactions on Information Technology in Biomedicine Abbreviated Journal TITB  
  Volume 16 Issue 6 Pages 1341-1352  
  Keywords  
  Abstract Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media.  
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  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1089-7771 ISBN Medium  
  Area 800 Expedition Conference  
  Notes MILAB; MV; OR;SIAI Approved no  
  Call Number Admin @ si @ SDV2012 Serial 2124  
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Author Fernando Vilariño; Stephan Ameling; Gerard Lacey; Stephen Patchett; Hugh Mulcahy edit  openurl
  Title Eye Tracking Search Patterns in Expert and Trainee Colonoscopists: A Novel Method of Assessing Endoscopic Competency? Type (up) Journal Article
  Year 2009 Publication Gastrointestinal Endoscopy Abbreviated Journal GI  
  Volume 69 Issue 5 Pages 370  
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  Area 800 Expedition Conference  
  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2420  
Permanent link to this record
 
 
Author Rozenn Dhayot; Fernando Vilariño; Gerard Lacey edit  doi
openurl 
  Title Improving the Quality of Color Colonoscopy Videos Type (up) Journal Article
  Year 2008 Publication EURASIP Journal on Image and Video Processing Abbreviated Journal EURASIP JIVP  
  Volume 139429 Issue 1 Pages 1-9  
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  Area 800 Expedition Conference  
  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2422  
Permanent link to this record
 
 
Author Stefan Ameling; Stephan Wirth; Dietrich Paulus; Gerard Lacey; Fernando Vilariño edit  openurl
  Title Texture-based Polyp Detection in Colonoscopy Type (up) Journal Article
  Year 2009 Publication Proc. BILDVERARBEITUNG FÜR DIE MEDIZIN Abbreviated Journal  
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  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2428  
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Author Onur Ferhat; Fernando Vilariño; F. Javier Sanchez edit  url
openurl 
  Title A cheap portable eye-tracker solution for common setups. Type (up) Journal Article
  Year 2014 Publication Journal of Eye Movement Research Abbreviated Journal JEMR  
  Volume 7 Issue 3 Pages 1-10  
  Keywords  
  Abstract We analyze the feasibility of a cheap eye-tracker where the hardware consists of a single webcam and a Raspberry Pi device. Our aim is to discover the limits of such a system and to see whether it provides an acceptable performance. We base our work on the open source Opengazer (Zielinski, 2013) and we propose several improvements to create a robust, real-time system which can work on a computer with 30Hz sampling rate. After assessing the accuracy of our eye-tracker in elaborated experiments involving 12 subjects under 4 different system setups, we install it on a Raspberry Pi to create a portable stand-alone eye-tracker which achieves 1.42° horizontal accuracy with 3Hz refresh rate for a building cost of 70 Euros.  
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  Area Expedition Conference  
  Notes ;SIAI Approved no  
  Call Number Admin @ si @ FVS2014 Serial 2435  
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Author Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Debora Gil; Cristina Rodriguez de Miguel; Fernando Vilariño edit   pdf
doi  openurl
  Title WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians Type (up) Journal Article
  Year 2015 Publication Computerized Medical Imaging and Graphics Abbreviated Journal CMIG  
  Volume 43 Issue Pages 99-111  
  Keywords Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection  
  Abstract We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice.  
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  Corporate Author Thesis  
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  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0895-6111 ISBN Medium  
  Area Expedition Conference  
  Notes MV; IAM; 600.047; 600.060; 600.075;SIAI Approved no  
  Call Number Admin @ si @ BSF2015 Serial 2609  
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Author Onur Ferhat; Fernando Vilariño edit   pdf
doi  openurl
  Title Low Cost Eye Tracking: The Current Panorama Type (up) Journal Article
  Year 2016 Publication Computational Intelligence and Neuroscience Abbreviated Journal CIN  
  Volume Issue Pages Article ID 8680541  
  Keywords  
  Abstract Despite the availability of accurate, commercial gaze tracker devices working with infrared (IR) technology, visible light gaze tracking constitutes an interesting alternative by allowing scalability and removing hardware requirements. Over the last years, this field has seen examples of research showing performance comparable to the IR alternatives. In this work, we survey the previous work on remote, visible light gaze trackers and analyze the explored techniques from various perspectives such as calibration strategies, head pose invariance, and gaze estimation techniques. We also provide information on related aspects of research such as public datasets to test against, open source projects to build upon, and gaze tracking services to directly use in applications. With all this information, we aim to provide the contemporary and future researchers with a map detailing previously explored ideas and the required tools.  
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  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes MV; 605.103; 600.047; 600.097;SIAI Approved no  
  Call Number Admin @ si @ FeV2016 Serial 2744  
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Author Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
doi  openurl
  Title Growing Algorithm for Intersection Detection (GRAID) in branching patterns Type (up) Journal Article
  Year 2015 Publication Machine Vision and Applications Abbreviated Journal MVAP  
  Volume 26 Issue 2 Pages 387-400  
  Keywords Bifurcation ; Crossroad; Intersection ;Retina ; Vessel  
  Abstract Analysis of branching structures represents a very important task in fields such as medical diagnosis, road detection or biometrics. Detecting intersection landmarks Becomes crucial when capturing the structure of a branching pattern. We present a very simple geometrical model to describe intersections in branching structures based on two conditions: Bounded Tangency condition (BT) and Shortest Branch (SB) condition. The proposed model precisely sets a geometrical characterization of intersections and allows us to introduce a new unsupervised operator for intersection extraction. We propose an implementation that handles the consequences of digital domain operation that,unlike existing approaches, is not restricted to a particular scale and does not require the computation of the thinned pattern. The new proposal, as well as other existing approaches in the bibliography, are evaluated in a common framework for the first time. The performance analysis is based on two manually segmented image data sets: DRIVE retinal image database and COLON-VESSEL data set, a newly created data set of vascular content in colonoscopy frames. We have created an intersection landmark ground truth for each data set besides comparing our method in the only existing ground truth. Quantitative results confirm that we are able to outperform state-of-the-art performancelevels with the advantage that neither training nor parameter tuning is needed.  
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  Area Expedition Conference  
  Notes ;SIAI Approved no  
  Call Number Admin @ si @MBS2015 Serial 2777  
Permanent link to this record
 
 
Author Fernando Vilariño; Enric Marti edit  openurl
  Title New didactic techniques in the EHES applying mobile technologies Type (up) Miscellaneous
  Year 2008 Publication Agencia de Gestio d´Ajuts Universitaris I de Recerca (AGAUR), Generalitat de Catalunya Abbreviated Journal  
  Volume Issue Pages  
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  Abstract  
  Address  
  Corporate Author Agencia de Gestió d’Ajuts Universitaris I de Recerca (AGAUR), Generalitat de Catalunya Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Agencia de Gestio d´Ajuts Universitaris I de Recerca (AGAUR), Generalitat de Catalunya Expedition Conference  
  Notes MILAB;IAM;MV;SIAI Approved no  
  Call Number IAM @ iam @ VIM2008 Serial 1664  
Permanent link to this record
 
 
Author Fernando Vilariño edit  openurl
  Title Bringing and keeping all the stakeholders together: creating a catalog of models of governance for innovation Type (up) Miscellaneous
  Year 2017 Publication Open Living Lab Days Report Abbreviated Journal  
  Volume Issue Pages  
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  Abstract  
  Address Krakow; August 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
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  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes MV; no menciona;SIAI Approved no  
  Call Number Admin @ si @ Vil2017b Serial 3033  
Permanent link to this record
 
 
Author Jorge Bernal; Fernando Vilariño; F. Javier Sanchez edit   pdf
openurl 
  Title Feature Detectors and Feature Descriptors: Where We Are Now Type (up) Report
  Year 2010 Publication CVC Technical Report Abbreviated Journal  
  Volume 154 Issue Pages  
  Keywords  
  Abstract Feature Detection and Feature Description are clearly nowadays topics. Many Computer Vision applications rely on the use of several of these techniques in order to extract the most significant aspects of an image so they can help in some tasks such as image retrieval, image registration, object recognition, object categorization and texture classification, among others. In this paper we define what Feature Detection and Description are and then we present an extensive collection of several methods in order to show the different techniques that are being used right now. The aim of this report is to provide a glimpse of what is being used currently in these fields and to serve as a starting point for future endeavours.  
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  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MV;SIAI Approved no  
  Call Number Admin @ si @ BVS2010; IAM @ iam @ BVS2010 Serial 1348  
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