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Author  |
Jorge Bernal; Debora Gil; Carles Sanchez; F. Javier Sanchez |
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Title |
Discarding Non Informative Regions for Efficient Colonoscopy Image Analysis |
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Conference Article |
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2014 |
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1st MICCAI Workshop on Computer-Assisted and Robotic Endoscopy |
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8899 |
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1-10 |
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Image Segmentation; Polyps, Colonoscopy; Valley Information; Energy Maps |
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Abstract |
In this paper we present a novel polyp region segmentation method for colonoscopy videos. Our method uses valley information associated to polyp boundaries in order to provide an initial segmentation. This first segmentation is refined to eliminate boundary discontinuities caused by image artifacts or other elements of the scene. Experimental results over a publicly annotated database show that our method outperforms both general and specific segmentation methods by providing more accurate regions rich in polyp content. We also prove how image preprocessing is needed to improve final polyp region segmentation. |
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Boston; USA; September 2014 |
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Springer International Publishing |
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0302-9743 |
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978-3-319-13409-3 |
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CARE |
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MV; IAM; 600.044; 600.047; 600.060; 600.075 |
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Admin @ si @ BGS2014b |
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2503 |
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Author |
Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Debora Gil; Cristina Rodriguez de Miguel; Fernando Vilariño |
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Title |
WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians |
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Journal Article |
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2015 |
Publication |
Computerized Medical Imaging and Graphics |
Abbreviated Journal |
CMIG |
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43 |
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99-111 |
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Keywords |
Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection |
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We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice. |
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0895-6111 |
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MV; IAM; 600.047; 600.060; 600.075;SIAI |
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Admin @ si @ BSF2015 |
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2609 |
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Author |
Jose Elias Yauri; Aura Hernandez-Sabate; Pau Folch; Debora Gil |
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Title |
Mental Workload Detection Based on EEG Analysis |
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Conference Article |
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Year |
2021 |
Publication |
Artificial Intelligent Research and Development. Proceedings 23rd International Conference of the Catalan Association for Artificial Intelligence. |
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339 |
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268-277 |
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Cognitive states; Mental workload; EEG analysis; Neural Networks. |
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The study of mental workload becomes essential for human work efficiency, health conditions and to avoid accidents, since workload compromises both performance and awareness. Although workload has been widely studied using several physiological measures, minimising the sensor network as much as possible remains both a challenge and a requirement.
Electroencephalogram (EEG) signals have shown a high correlation to specific cognitive and mental states like workload. However, there is not enough evidence in the literature to validate how well models generalize in case of new subjects performing tasks of a workload similar to the ones included during model’s training.
In this paper we propose a binary neural network to classify EEG features across different mental workloads. Two workloads, low and medium, are induced using two variants of the N-Back Test. The proposed model was validated in a dataset collected from 16 subjects and shown a high level of generalization capability: model reported an average recall of 81.81% in a leave-one-out subject evaluation. |
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Virtual; October 20-22 2021 |
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CCIA |
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IAM; 600.139; 600.118; 600.145 |
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Admin @ si @ |
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3723 |
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Josefina Mauri; Eduard Fernandez-Nofrerias; J. Comin; B. Garcia del Blanco; E. Iraculis; J.A. Gomez-Hospital; P. Valdovinos; F. Jara; A. Cequier; E. Esplugas; Oriol Pujol; Cristina Cañero; Debora Gil; Petia Radeva; Ricardo Toledo |
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Title |
Avaluació del Conjunt Stent/Artèria mitjançant ecografia intracoronària: lentorn informàtic |
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Conference Article |
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2000 |
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Congrés de la Societat Catalana de Cardiologia. |
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IAM;RV;MILAB;ADAS;HuPBA |
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IAM @ iam @ MNC2000 |
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1622 |
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Josefina Mauri; Eduard Fernandez-Nofrerias; B. Garcia del Blanco; E. Iraculis; J.A. Gomez-Hospital; J. Comin; M.A. Sanchez Corral; F. Jara; A. Cequier; E. Esplugas; Debora Gil; J. Saludes; Petia Radeva; Ricardo Toledo; Juan J.Villanueva |
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Title |
Moviment del vas en l anàlisi d imatges d ecografia intracoronària: un model matemàtic |
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Conference Article |
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2000 |
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Congrés de la Societat Catalana de Cardiologia. |
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IAM;RV;ISE;MILAB;ADAS |
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IAM @ iam @ MNG2000 |
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1621 |
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Juan Borrego-Carazo; Carles Sanchez; David Castells; Jordi Carrabina; Debora Gil |
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Title |
BronchoPose: an analysis of data and model configuration for vision-based bronchoscopy pose estimation |
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Journal Article |
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2023 |
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Computer Methods and Programs in Biomedicine |
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CMPB |
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228 |
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107241 |
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Videobronchoscopy guiding; Deep learning; Architecture optimization; Datasets; Standardized evaluation framework; Pose estimation |
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Vision-based bronchoscopy (VB) models require the registration of the virtual lung model with the frames from the video bronchoscopy to provide effective guidance during the biopsy. The registration can be achieved by either tracking the position and orientation of the bronchoscopy camera or by calibrating its deviation from the pose (position and orientation) simulated in the virtual lung model. Recent advances in neural networks and temporal image processing have provided new opportunities for guided bronchoscopy. However, such progress has been hindered by the lack of comparative experimental conditions.
In the present paper, we share a novel synthetic dataset allowing for a fair comparison of methods. Moreover, this paper investigates several neural network architectures for the learning of temporal information at different levels of subject personalization. In order to improve orientation measurement, we also present a standardized comparison framework and a novel metric for camera orientation learning. Results on the dataset show that the proposed metric and architectures, as well as the standardized conditions, provide notable improvements to current state-of-the-art camera pose estimation in video bronchoscopy. |
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Elsevier |
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IAM; |
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Admin @ si @ BSC2023 |
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3702 |
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Author |
Juan Borrego-Carazo; Carles Sanchez; David Castells; Jordi Carrabina; Debora Gil |
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Title |
A benchmark for the evaluation of computational methods for bronchoscopic navigation |
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Journal Article |
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2022 |
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International Journal of Computer Assisted Radiology and Surgery |
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IJCARS |
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17 |
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1 |
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IAM |
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Admin @ si @ BSC2022 |
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3832 |
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Author |
Katerine Diaz; Jesus Martinez del Rincon; Aura Hernandez-Sabate; Debora Gil |
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Title |
Continuous head pose estimation using manifold subspace embedding and multivariate regression |
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Journal Article |
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2018 |
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IEEE Access |
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ACCESS |
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6 |
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18325 - 18334 |
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Head Pose estimation; HOG features; Generalized Discriminative Common Vectors; B-splines; Multiple linear regression |
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In this paper, a continuous head pose estimation system is proposed to estimate yaw and pitch head angles from raw facial images. Our approach is based on manifold learningbased methods, due to their promising generalization properties shown for face modelling from images. The method combines histograms of oriented gradients, generalized discriminative common vectors and continuous local regression to achieve successful performance. Our proposal was tested on multiple standard face datasets, as well as in a realistic scenario. Results show a considerable performance improvement and a higher consistence of our model in comparison with other state-of-art methods, with angular errors varying between 9 and 17 degrees. |
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2169-3536 |
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ADAS; 600.118 |
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Admin @ si @ DMH2018b |
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3091 |
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Author |
M.Gomez; Josefina Mauri; Eduard Fernandez-Nofrerias; Oriol Rodriguez-Leon; Carme Julia; Debora Gil; Petia Radeva |
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Title |
Reconstrucción de un modelo espacio-temporal de la luz del vaso a partir de secuencias de ecografía intracoronaria |
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Conference Article |
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2002 |
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XXXVIII Congreso Nacional de la Sociedad Española de Cardiología. |
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IAM;ADAS;MILAB |
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IAM @ iam @ GMF2002d |
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1516 |
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Mariano Vazquez; Ruth Aris; Guillaume Hozeaux; R.Aubry; P.Villar;Jaume Garcia ; Debora Gil; Francesc Carreras |
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A massively parallel computational electrophysiology model of the heart |
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2011 |
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International Journal for Numerical Methods in Biomedical Engineering |
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IJNMBE |
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27 |
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1911-1929 |
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computational electrophysiology; parallelization; finite element methods |
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This paper presents a patient-sensitive simulation strategy capable of using the most efficient way the high-performance computational resources. The proposed strategy directly involves three different players: Computational Mechanics Scientists (CMS), Image Processing Scientists and Cardiologists, each one mastering its own expertise area within the project. This paper describes the general integrative scheme but focusing on the CMS side presents a massively parallel implementation of computational electrophysiology applied to cardiac tissue simulation. The paper covers different angles of the computational problem: equations, numerical issues, the algorithm and parallel implementation. The proposed methodology is illustrated with numerical simulations testing all the different possibilities, ranging from small domains up to very large ones. A key issue is the almost ideal scalability not only for large and complex problems but also for medium-size meshes. The explicit formulation is particularly well suited for solving this highly transient problems, with very short time-scale. |
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Swansea (UK) |
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John Wiley & Sons, Ltd. |
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John Wiley & Sons, Ltd. |
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IAM |
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IAM @ iam @ VAH2011 |
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1198 |
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