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Carles Sanchez, Debora Gil, T. Gache, N. Koufos, Marta Diez-Ferrer, & Antoni Rosell. (2016). SENSA: a System for Endoscopic Stenosis Assessment. In 28th Conference of the international Society for Medical Innovation and Technology.
Abstract: Documenting the severity of a static or dynamic Central Airway Obstruction (CAO) is crucial to establish proper diagnosis and treatment, predict possible treatment effects and better follow-up the patients. The subjective visual evaluation of a stenosis during video-bronchoscopy still remains the most common way to assess a CAO in spite of a consensus among experts for a need to standardize all calculations [1].
The Computer Vision Center in cooperation with the «Hospital de Bellvitge», has developed a System for Endoscopic Stenosis Assessment (SENSA), which computes CAO directly by analyzing standard bronchoscopic data without the need of using other imaging tecnologies.
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Carles Sanchez, Antonio Esteban Lansaque, Agnes Borras, Marta Diez-Ferrer, Antoni Rosell, & Debora Gil. (2017). Towards a Videobronchoscopy Localization System from Airway Centre Tracking. In 12th International Conference on Computer Vision Theory and Applications (pp. 352–359).
Abstract: Bronchoscopists use fluoroscopy to guide flexible bronchoscopy to the lesion to be biopsied without any kind of incision. Being fluoroscopy an imaging technique based on X-rays, the risk of developmental problems and cancer is increased in those subjects exposed to its application, so minimizing radiation is crucial. Alternative guiding systems such as electromagnetic navigation require specific equipment, increase the cost of the clinical procedure and still require fluoroscopy. In this paper we propose an image based guiding system based on the extraction of airway centres from intra-operative videos. Such anatomical landmarks are matched to the airway centreline extracted from a pre-planned CT to indicate the best path to the nodule. We present a
feasibility study of our navigation system using simulated bronchoscopic videos and a multi-expert validation of landmarks extraction in 3 intra-operative ultrathin explorations.
Keywords: Video-bronchoscopy; Lung cancer diagnosis; Airway lumen detection; Region tracking; Guided bronchoscopy navigation
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Marta Diez-Ferrer, Debora Gil, Elena Carreño, Susana Padrones, Samantha Aso, Vanesa Vicens, et al. (2017). Positive Airway Pressure-Enhanced CT to Improve Virtual Bronchoscopic Navigation. ERJ - European Respiratory Journal, .
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Thanh Ha Do, Salvatore Tabbone, & Oriol Ramos Terrades. (2016). Sparse representation over learned dictionary for symbol recognition. SP - Signal Processing, 125, 36–47.
Abstract: In this paper we propose an original sparse vector model for symbol retrieval task. More specically, we apply the K-SVD algorithm for learning a visual dictionary based on symbol descriptors locally computed around interest points. Results on benchmark datasets show that the obtained sparse representation is competitive related to state-of-the-art methods. Moreover, our sparse representation is invariant to rotation and scale transforms and also robust to degraded images and distorted symbols. Thereby, the learned visual dictionary is able to represent instances of unseen classes of symbols.
Keywords: Symbol Recognition; Sparse Representation; Learned Dictionary; Shape Context; Interest Points
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Quentin Angermann, Jorge Bernal, Cristina Sanchez Montes, Maroua Hammami, Gloria Fernandez Esparrach, Xavier Dray, et al. (2017). Real-Time Polyp Detection in Colonoscopy Videos: A Preliminary Study For Adapting Still Frame-based Methodology To Video Sequences Analysis. In 31st International Congress and Exhibition on Computer Assisted Radiology and Surgery.
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Hana Jarraya, Oriol Ramos Terrades, & Josep Llados. (2017). Graph Embedding through Probabilistic Graphical Model applied to Symbolic Graphs. In 8th Iberian Conference on Pattern Recognition and Image Analysis.
Abstract: We propose a new Graph Embedding (GEM) method that takes advantages of structural pattern representation. It models an Attributed Graph (AG) as a Probabilistic Graphical Model (PGM). Then, it learns the parameters of this PGM presented by a vector. This vector is a signature of AG in a lower dimensional vectorial space. We apply Structured Support Vector Machines (SSVM) to process classification task. As first tentative, results on the GREC dataset are encouraging enough to go further on this direction.
Keywords: Attributed Graph; Probabilistic Graphical Model; Graph Embedding; Structured Support Vector Machines
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Lasse Martensson, Anders Hast, & Alicia Fornes. (2017). Word Spotting as a Tool for Scribal Attribution. In 2nd Conference of the association of Digital Humanities in the Nordic Countries (pp. 87–89).
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Pau Riba, Alicia Fornes, & Josep Llados. (2017). Towards the Alignment of Handwritten Music Scores. In Bart Lamiroy, & R Dueire Lins (Eds.), International Workshop on Graphics Recognition. GREC 2015.Graphic Recognition. Current Trends and Challenges (Vol. 9657, pp. 103–116). LNCS.
Abstract: It is very common to nd dierent versions of the same music work in archives of Opera Theaters. These dierences correspond to modications and annotations from the musicians. From the musicologist point of view, these variations are very interesting and deserve study.
This paper explores the alignment of music scores as a tool for automatically detecting the passages that contain such dierences. Given the diculties in the recognition of handwritten music scores, our goal is to align the music scores and at the same time, avoid the recognition of music elements as much as possible. After removing the sta lines, braces and ties, the bar lines are detected. Then, the bar units are described as a whole using the Blurred Shape Model. The bar units alignment is performed by using Dynamic Time Warping. The analysis of the alignment path is used to detect the variations in the music scores. The method has been evaluated on a subset of the CVC-MUSCIMA dataset, showing encouraging results.
Keywords: Optical Music Recognition; Handwritten Music Scores; Dynamic Time Warping alignment
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Thanh Ha Do, Salvatore Tabbone, & Oriol Ramos Terrades. (2016). Spotting Symbol over Graphical Documents Via Sparsity in Visual Vocabulary. In Recent Trends in Image Processing and Pattern Recognition (Vol. 709).
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Joan Serrat, Felipe Lumbreras, Francisco Blanco, Manuel Valiente, & Montserrat Lopez-Mesas. (2017). myStone: A system for automatic kidney stone classification. ESA - Expert Systems with Applications, 89, 41–51.
Abstract: Kidney stone formation is a common disease and the incidence rate is constantly increasing worldwide. It has been shown that the classification of kidney stones can lead to an important reduction of the recurrence rate. The classification of kidney stones by human experts on the basis of certain visual color and texture features is one of the most employed techniques. However, the knowledge of how to analyze kidney stones is not widespread, and the experts learn only after being trained on a large number of samples of the different classes. In this paper we describe a new device specifically designed for capturing images of expelled kidney stones, and a method to learn and apply the experts knowledge with regard to their classification. We show that with off the shelf components, a carefully selected set of features and a state of the art classifier it is possible to automate this difficult task to a good degree. We report results on a collection of 454 kidney stones, achieving an overall accuracy of 63% for a set of eight classes covering almost all of the kidney stones taxonomy. Moreover, for more than 80% of samples the real class is the first or the second most probable class according to the system, being then the patient recommendations for the two top classes similar. This is the first attempt towards the automatic visual classification of kidney stones, and based on the current results we foresee better accuracies with the increase of the dataset size.
Keywords: Kidney stone; Optical device; Computer vision; Image classification
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Debora Gil, Oriol Ramos Terrades, Elisa Minchole, Carles Sanchez, Noelia Cubero de Frutos, Marta Diez-Ferrer, et al. (2017). Classification of Confocal Endomicroscopy Patterns for Diagnosis of Lung Cancer. In 6th Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging (Vol. 10550, pp. 151–159). LNCS.
Abstract: Confocal Laser Endomicroscopy (CLE) is an emerging imaging technique that allows the in-vivo acquisition of cell patterns of potentially malignant lesions. Such patterns could discriminate between inflammatory and neoplastic lesions and, thus, serve as a first in-vivo biopsy to discard cases that do not actually require a cell biopsy.
The goal of this work is to explore whether CLE images obtained during videobronchoscopy contain enough visual information to discriminate between benign and malign peripheral lesions for lung cancer diagnosis. To do so, we have performed a pilot comparative study with 12 patients (6 adenocarcinoma and 6 benign-inflammatory) using 2 different methods for CLE pattern analysis: visual analysis by 3 experts and a novel methodology that uses graph methods to find patterns in pre-trained feature spaces. Our preliminary results indicate that although visual analysis can only achieve a 60.2% of accuracy, the accuracy of the proposed unsupervised image pattern classification raises to 84.6%.
We conclude that CLE images visual information allow in-vivo detection of neoplastic lesions and graph structural analysis applied to deep-learning feature spaces can achieve competitive results.
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Mireia Sole, Joan Blanco, Debora Gil, G. Fonseka, Richard Frodsham, Oliver Valero, et al. (2017). Is there a pattern of Chromosome territoriality along mice spermatogenesis? In 3rd Spanish MeioNet Meeting Abstract Book (pp. 55–56).
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Mireia Sole, Joan Blanco, Debora Gil, G. Fonseka, Richard Frodsham, Oliver Valero, et al. (2017). Unraveling the enigmas of chromosome territoriality during spermatogenesis. In IX Jornada del Departament de Biologia Cel•lular, Fisiologia i Immunologia.
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Pau Rodriguez, Guillem Cucurull, Josep M. Gonfaus, Xavier Roca, & Jordi Gonzalez. (2017). Age and gender recognition in the wild with deep attention. PR - Pattern Recognition, 72, 563–571.
Abstract: Face analysis in images in the wild still pose a challenge for automatic age and gender recognition tasks, mainly due to their high variability in resolution, deformation, and occlusion. Although the performance has highly increased thanks to Convolutional Neural Networks (CNNs), it is still far from optimal when compared to other image recognition tasks, mainly because of the high sensitiveness of CNNs to facial variations. In this paper, inspired by biology and the recent success of attention mechanisms on visual question answering and fine-grained recognition, we propose a novel feedforward attention mechanism that is able to discover the most informative and reliable parts of a given face for improving age and gender classification. In particular, given a downsampled facial image, the proposed model is trained based on a novel end-to-end learning framework to extract the most discriminative patches from the original high-resolution image. Experimental validation on the standard Adience, Images of Groups, and MORPH II benchmarks show that including attention mechanisms enhances the performance of CNNs in terms of robustness and accuracy.
Keywords: Age recognition; Gender recognition; Deep neural networks; Attention mechanisms
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Mireia Sole, Joan Blanco, Debora Gil, G. Fonseka, Richard Frodsham, Francesca Vidal, et al. (2017). Noves perspectives en l estudi de la territorialitat cromosomica de cel·lules germinals masculines: estudis tridimensionals. JBR - Biologia de la Reproduccio, 73–78.
Abstract: In somatic cells, chromosomes occupy specific nuclear regions called chromosome territories which are involved in the
maintenance and regulation of the genome. Preliminary data in male germ cells also suggest the importance of chromosome
territoriality in cell functionality. Nevertheless, the specific characteristics of testicular tissue (presence of different
cell types with different morphological characteristics, in different stages of development and with different ploidy)
makes difficult to achieve conclusive results. In this study we have developed a methodology to approach the threedimensional
study of all chromosome territories in male germ cells from C57BL/6J mice (Mus musculus). The method
includes the following steps: i) Optimized cell fixation to obtain an optimal preservation of the three-dimensionality cell
morphology, ii) Chromosome identification by FISH (Chromoprobe Multiprobe® OctoChrome™ Murine System; Cytocell)
and confocal microscopy (TCS-SP5, Leica Microsystems), iii) Cell type identification by immunofluorescence
iv) Image analysis using Matlab scripts, v) Numerical data extraction related to chromosome features, chromosome
radial position and chromosome relative position. This methodology allows the unequivocally identification and the
analysis of the chromosome territories of all spermatogenic stages. Results will provide information about the features
that determine chromosomal position, preferred associations between chromosomes, and the relationship between chromosome
positioning and genome regulation.
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