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Author |
Jorge Bernal; F. Javier Sanchez; Fernando Vilariño |
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Title |
Impact of Image Preprocessing Methods on Polyp Localization in Colonoscopy Frames |
Type |
Conference Article |
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Year |
2013 |
Publication |
35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society |
Abbreviated Journal |
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7350 - 7354 |
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Abstract |
In this paper we present our image preprocessing methods as a key part of our automatic polyp localization scheme. These methods are used to assess the impact of different endoluminal scene elements when characterizing polyps. More precisely we tackle the influence of specular highlights, blood vessels and black mask surrounding the scene. Experimental results prove that the appropriate handling of these elements leads to a great improvement in polyp localization results. |
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Osaka; Japan; July 2013 |
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1557-170X |
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800 |
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EMBC |
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Notes |
MV; 600.047; 600.060;SIAI |
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no |
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Call Number |
Admin @ si @ BSV2013 |
Serial |
2286 |
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Author |
Jorge Bernal; F. Javier Sanchez; Fernando Vilariño |
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Title |
Towards Automatic Polyp Detection with a Polyp Appearance Model |
Type |
Journal Article |
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Year |
2012 |
Publication |
Pattern Recognition |
Abbreviated Journal |
PR |
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Volume |
45 |
Issue |
9 |
Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
3166-3182 |
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Keywords |
Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot |
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Abstract |
This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside. |
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Elsevier |
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0031-3203 |
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800 |
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IbPRIA |
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Notes |
MV;SIAI |
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no |
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Call Number |
Admin @ si @ BSV2012; IAM @ iam |
Serial |
1997 |
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Author |
Santiago Segui; Michal Drozdzal; Fernando Vilariño; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria |
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Title |
Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy |
Type |
Journal Article |
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Year |
2012 |
Publication |
IEEE Transactions on Information Technology in Biomedicine |
Abbreviated Journal |
TITB |
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Volume |
16 |
Issue |
6 |
Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
1341-1352 |
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Abstract |
Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media. |
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1089-7771 |
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800 |
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Notes |
MILAB; MV; OR;SIAI |
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no |
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Call Number |
Admin @ si @ SDV2012 |
Serial |
2124 |
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Permanent link to this record |
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Author |
Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva |
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Title |
ROC curves and video analysis optimization in intestinal capsule endoscopy |
Type |
Journal Article |
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Year |
2006 |
Publication |
Pattern Recognition Letters |
Abbreviated Journal |
PRL |
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Volume |
27 |
Issue |
8 |
Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
875–881 |
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Keywords |
ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy |
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Abstract |
Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions. |
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800 |
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Notes |
MILAB;MV;SIAI |
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no |
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Call Number |
BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006 |
Serial |
647 |
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Permanent link to this record |
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Author |
Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva |
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Title |
Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy |
Type |
Conference Article |
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Year |
2006 |
Publication |
18th International Conference on Pattern Recognition |
Abbreviated Journal |
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Volume |
4 |
Issue |
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Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
719-722 |
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Keywords |
Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization |
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Abstract |
Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found. |
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Hong Kong |
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ISSN |
1051-4651 |
ISBN |
0-7695-2521-0 |
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Area |
800 |
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Conference |
ICPR |
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Notes |
MV;OR;MILAB;SIAI |
Approved |
no |
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Call Number |
BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g |
Serial |
727 |
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Permanent link to this record |
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Author |
Farhan Riaz; Fernando Vilariño; Mario Dinis-Ribeiro; Miguel Coimbraln |
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Title |
Identifying Potentially Cancerous Tissues in Chromoendoscopy Images |
Type |
Conference Article |
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Year |
2011 |
Publication |
5th Iberian Conference on Pattern Recognition and Image Analysis |
Abbreviated Journal |
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Volume |
6669 |
Issue |
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Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
709-716 |
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Keywords |
Endoscopy, Computer Assisted Diagnosis, Gradient. |
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Abstract |
The dynamics of image acquisition conditions for gastroenterology imaging scenarios pose novel challenges for automatic computer assisted decision systems. Such systems should have the ability to mimic the tissue characterization of the physicians. In this paper, our objective is to compare some feature extraction methods to classify a Chromoendoscopy image into two different classes: Normal and Potentially cancerous. Results show that LoG filters generally give best classification accuracy among the other feature extraction methods considered. |
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Las Palmas de Gran Canaria. Spain |
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Springer |
Place of Publication |
Berlin |
Editor |
J. Vitria, J.M. Sanches, and M. Hernandez |
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LNCS |
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ISBN |
978-3-642-21256-7 |
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800 |
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IbPRIA |
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Notes |
MV;SIAI |
Approved |
no |
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Call Number |
Admin @ si @ RVD2011; IAM @ iam @ RVD2011 |
Serial |
1726 |
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Permanent link to this record |
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Author |
Fernando Vilariño; Stephan Ameling; Gerard Lacey; Stephen Patchett; Hugh Mulcahy |
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Title |
Eye Tracking Search Patterns in Expert and Trainee Colonoscopists: A Novel Method of Assessing Endoscopic Competency? |
Type |
Journal Article |
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Year |
2009 |
Publication |
Gastrointestinal Endoscopy |
Abbreviated Journal |
GI |
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Volume |
69 |
Issue |
5 |
Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
370 |
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800 |
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MV;SIAI |
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no |
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Call Number |
fernando @ fernando @ |
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2420 |
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Author |
Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil |
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Title |
An illumination model of the trachea appearance in videobronchoscopy images |
Type |
Book Chapter |
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Year |
2012 |
Publication |
Image Analysis and Recognition |
Abbreviated Journal |
LNCS |
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Volume |
7325 |
Issue |
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Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
313-320 |
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Keywords |
Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation |
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Abstract |
Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution. |
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Address |
Aveiro, Portugal |
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Springer Berlin Heidelberg |
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Lecture Notes in Computer Science |
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LNCS |
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ISSN |
0302-9743 |
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978-3-642-31297-7 |
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800 |
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Conference |
ICIAR |
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Notes |
MV;IAM |
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no |
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Call Number |
IAM @ iam @ SSR2012 |
Serial |
1898 |
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Author |
Fernando Vilariño; Gerard Lacey; Jiang Zhou; Hugh Mulcahy; Stephen Patchett |
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Title |
Automatic Labeling of Colonoscopy Video for Cancer Detection |
Type |
Conference Article |
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Year |
2007 |
Publication |
In Proc. berian Conference, IbPRIA |
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290-297 |
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800 |
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MV;SIAI |
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no |
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Call Number |
fernando @ fernando @ |
Serial |
2431 |
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Permanent link to this record |
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Author |
Joan M. Nuñez; Debora Gil; Fernando Vilariño |
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Title |
Finger joint characterization from X-ray images for rheymatoid arthritis assessment |
Type |
Conference Article |
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Year |
2013 |
Publication |
6th International Conference on Biomedical Electronics and Devices |
Abbreviated Journal |
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288-292 |
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Keywords |
Rheumatoid Arthritis; X-Ray; Hand Joint; Sclerosis; Sharp Van der Heijde |
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Abstract |
In this study we propose amodular systemfor automatic rheumatoid arthritis assessment which provides a joint space width measure. A hand joint model is proposed based on the accurate analysis of a X-ray finger joint image sample set. This model shows that the sclerosis and the lower bone are the main necessary features in order to perform a proper finger joint characterization. We propose sclerosis and lower bone detection methods as well as the experimental setup necessary for its performance assessment. Our characterization is used to propose and compute a joint space width score which is shown to be related to the different degrees of arthritis. This assertion is verified by comparing our proposed score with Sharp Van der Heijde score, confirming that the lower our score is the more advanced is the patient affection. |
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Barcelona; February 2013 |
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SciTePress |
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800 |
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BIODEVICES |
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Notes |
IAM;MV; 600.057; 600.054;SIAI |
Approved |
no |
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Call Number |
IAM @ iam @ NGV2013 |
Serial |
2196 |
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Permanent link to this record |
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Author |
Jorge Bernal; Fernando Vilariño; F. Javier Sanchez |
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Title |
Towards Intelligent Systems for Colonoscopy |
Type |
Book Chapter |
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Year |
2011 |
Publication |
Colonoscopy |
Abbreviated Journal |
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Volume |
1 |
Issue |
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257-282 |
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Abstract |
In this chapter we present tools that can be used to build intelligent systems for colonoscopy.
The idea is, by using methods based on computer vision and artificial intelligence, add significant value to the colonoscopy procedure. Intelligent systems are being used to assist in other medical interventions |
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Publisher |
Intech |
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Editor |
Paul Miskovitz |
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978-953-307-568-6 |
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800 |
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Notes |
MV;SIAI |
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no |
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Call Number |
IAM @ iam @ BVS2011 |
Serial |
1697 |
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Permanent link to this record |
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Author |
Santiago Segui; Laura Igual; Fernando Vilariño; Petia Radeva; Carolina Malagelada; Fernando Azpiroz; Jordi Vitria |
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Title |
Diagnostic System for Intestinal Motility Disfunctions Using Video Capsule Endoscopy |
Type |
Book Chapter |
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Year |
2008 |
Publication |
Computer Vision Systems. 6th International |
Abbreviated Journal |
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Volume |
5008 |
Issue |
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251–260 |
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Abstract |
Wireless Video Capsule Endoscopy is a clinical technique consisting of the analysis of images from the intestine which are pro- vided by an ingestible device with a camera attached to it. In this paper we propose an automatic system to diagnose severe intestinal motility disfunctions using the video endoscopy data. The system is based on the application of computer vision techniques within a machine learn- ing framework in order to obtain the characterization of diverse motil- ity events from video sequences. We present experimental results that demonstrate the effectiveness of the proposed system and compare them with the ground-truth provided by the gastroenterologists. |
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Address |
Santorini (Greece) |
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Springer-Verlag |
Place of Publication |
Berlin Heidelberg |
Editor |
A. Gasteratos, M. Vincze, and J.K. Tsotsos |
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LNCS |
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978-3-540-79546-9 |
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800 |
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Conference |
ICVS |
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Notes |
OR; MV; MILAB; SIAI |
Approved |
no |
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Call Number |
BCNPCL @ bcnpcl @ SIV2008; IAM @ iam @ SIV2008 |
Serial |
962 |
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Permanent link to this record |
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Author |
Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva |
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Title |
Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions |
Type |
Journal Article |
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Year |
2010 |
Publication |
IEEE Transactions on Medical Imaging |
Abbreviated Journal |
TMI |
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Volume |
29 |
Issue |
2 |
Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
246-259 |
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Abstract |
Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions. |
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IEEE |
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Edition |
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ISSN |
0278-0062 |
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Medium |
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Area |
800 |
Expedition |
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Conference |
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Notes |
MILAB;MV;OR;SIAI |
Approved |
no |
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Call Number |
BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 |
Serial |
1281 |
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Permanent link to this record |
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Author |
Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Carolina Malagelada; Petia Radeva |
![download PDF file pdf](img/file_PDF.gif)
![find record details (via OpenURL) openurl](img/xref.gif)
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Title |
A Machine Learning framework using SOMs: Applications in the Intestinal Motility Assessment |
Type |
Book Chapter |
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Year |
2006 |
Publication |
11th Iberoamerican Congress on Pattern Recognition |
Abbreviated Journal |
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Volume |
4225 |
Issue |
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Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
188–197 |
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Keywords |
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Abstract |
Small Bowel Motility Assessment by means of Wireless Capsule Video Endoscopy constitutes a novel clinical methodology in which a capsule with a micro-camera attached to it is swallowed by the patient, emitting a RF signal which is recorded as a video of its trip throughout the gut. In order to overcome the main drawbacks associated with this technique -mainly related to the large amount of visualization time required-, our efforts have been focused on the development of a machine learning system, built up in sequential stages, which provides the specialists with the useful part of the video, rejecting those parts not valid for analysis. We successfully used Self Organized Maps in a general semi-supervised framework with the aim of tackling the different learning stages of our system. The analysis of the diverse types of images and the automatic detection of intestinal contractions is performed under the perspective of intestinal motility assessment in a clinical environment. |
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Address |
Cancun (Mexico) |
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Thesis |
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Publisher |
Springer Verlag |
Place of Publication |
Berlin-Heidelberg |
Editor |
J.P. Martinez–Trinidad et al |
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LNCS |
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Area |
800 |
Expedition |
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Conference |
CIARP06 |
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Notes |
MV;OR;MILAB;SIAI |
Approved |
no |
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Call Number |
BCNPCL @ bcnpcl @ VSV2006d; IAM @ iam @ VSV2006e |
Serial |
729 |
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Permanent link to this record |
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Author |
Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Carolina Malagelada; Petia Radeva |
![download PDF file pdf](img/file_PDF.gif)
![find record details (via OpenURL) openurl](img/xref.gif)
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Title |
Linear Radial Patterns Characterization for Automatic Detection of Tonic Intestinal Contractions |
Type |
Book Chapter |
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Year |
2006 |
Publication |
11th Iberoamerican Congress on Pattern Recognition |
Abbreviated Journal |
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Volume |
4225 |
Issue |
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Pages ![sorted by First Page field, descending order (down)](img/sort_desc.gif) |
178–187 |
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Keywords |
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Abstract |
This work tackles the categorization of general linear radial patterns by means of the valleys and ridges detection and the use of descriptors of directional information, which are provided by steerable filters in different regions of the image. We successfully apply our proposal in the specific case of automatic detection of tonic contractions in video capsule endoscopy, which represent a paradigmatic example of linear radial patterns. |
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Address |
Cancun (Mexico) |
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Thesis |
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Publisher |
Springer Verlag |
Place of Publication |
Berlin Heidelberg |
Editor |
.F. Mart ́ınez-Trinidad et al |
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LNCS |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
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ISBN |
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Medium |
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Area |
800 |
Expedition |
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Conference |
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Notes |
MV;OR;MILAB;SIAI |
Approved |
no |
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Call Number |
BCNPCL @ bcnpcl @ VSV2006c; IAM @ iam @ VSB2006f |
Serial |
728 |
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Permanent link to this record |