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	Author	Sounak Dey; Palaiahnakote Shivakumara; K.S. Raghunanda; Umapada Pal; Tong Lu; G. Hemantha Kumar; Chee Seng Chan
	Title	Script independent approach for multi-oriented text detection in scene image			Type	Journal Article
	Year	2017	Publication	Neurocomputing	Abbreviated Journal	NEUCOM
	Volume	242	Issue		Pages	96-112
	Keywords
	Abstract	Developing a text detection method which is invariant to scripts in natural scene images is a challeng- ing task due to different geometrical structures of various scripts. Besides, multi-oriented of text lines in natural scene images make the problem more challenging. This paper proposes to explore ring radius transform (RRT) for text detection in multi-oriented and multi-script environments. The method finds component regions based on convex hull to generate radius matrices using RRT. It is a fact that RRT pro- vides low radius values for the pixels that are near to edges, constant radius values for the pixels that represent stroke width, and high radius values that represent holes created in background and convex hull because of the regular structures of text components. We apply k -means clustering on the radius matrices to group such spatially coherent regions into individual clusters. Then the proposed method studies the radius values of such cluster components that are close to the centroid and far from the cen- troid to detect text components. Furthermore, we have developed a Bangla dataset (named as ISI-UM dataset) and propose a semi-automatic system for generating its ground truth for text detection of arbi- trary orientations, which can be used by the researchers for text detection and recognition in the future. The ground truth will be released to public. Experimental results on our ISI-UM data and other standard datasets, namely, ICDAR 2013 scene, SVT and MSRA data, show that the proposed method outperforms the existing methods in terms of multi-lingual and multi-oriented text detection ability.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; 600.121			Approved	no
	Call Number	Admin @ si @ DSR2017			Serial	3260
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	Author	Antonio Lopez; Gabriel Villalonga; Laura Sellart; German Ros; David Vazquez; Jiaolong Xu; Javier Marin; Azadeh S. Mozafari
	Title	Training my car to see using virtual worlds			Type	Journal Article
	Year	2017	Publication	Image and Vision Computing	Abbreviated Journal	IMAVIS
	Volume	38	Issue		Pages	102-118
	Keywords
	Abstract	Computer vision technologies are at the core of different advanced driver assistance systems (ADAS) and will play a key role in oncoming autonomous vehicles too. One of the main challenges for such technologies is to perceive the driving environment, i.e. to detect and track relevant driving information in a reliable manner (e.g. pedestrians in the vehicle route, free space to drive through). Nowadays it is clear that machine learning techniques are essential for developing such a visual perception for driving. In particular, the standard working pipeline consists of collecting data (i.e. on-board images), manually annotating the data (e.g. drawing bounding boxes around pedestrians), learning a discriminative data representation taking advantage of such annotations (e.g. a deformable part-based model, a deep convolutional neural network), and then assessing the reliability of such representation with the acquired data. In the last two decades most of the research efforts focused on representation learning (first, designing descriptors and learning classifiers; later doing it end-to-end). Hence, collecting data and, especially, annotating it, is essential for learning good representations. While this has been the case from the very beginning, only after the disruptive appearance of deep convolutional neural networks that it became a serious issue due to their data hungry nature. In this context, the problem is that manual data annotation is a tiresome work prone to errors. Accordingly, in the late 00’s we initiated a research line consisting of training visual models using photo-realistic computer graphics, especially focusing on assisted and autonomous driving. In this paper, we summarize such a work and show how it has become a new tendency with increasing acceptance.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.118			Approved	no
	Call Number	Admin @ si @ LVS2017			Serial	2985
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	Author	Pau Riba; Alicia Fornes; Josep Llados
	Title	Towards the Alignment of Handwritten Music Scores			Type	Book Chapter
	Year	2017	Publication	International Workshop on Graphics Recognition. GREC 2015.Graphic Recognition. Current Trends and Challenges	Abbreviated Journal
	Volume	9657	Issue		Pages	103-116
	Keywords	Optical Music Recognition; Handwritten Music Scores; Dynamic Time Warping alignment
	Abstract	It is very common to nd dierent versions of the same music work in archives of Opera Theaters. These dierences correspond to modications and annotations from the musicians. From the musicologist point of view, these variations are very interesting and deserve study. This paper explores the alignment of music scores as a tool for automatically detecting the passages that contain such dierences. Given the diculties in the recognition of handwritten music scores, our goal is to align the music scores and at the same time, avoid the recognition of music elements as much as possible. After removing the sta lines, braces and ties, the bar lines are detected. Then, the bar units are described as a whole using the Blurred Shape Model. The bar units alignment is performed by using Dynamic Time Warping. The analysis of the alignment path is used to detect the variations in the music scores. The method has been evaluated on a subset of the CVC-MUSCIMA dataset, showing encouraging results.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor	Bart Lamiroy; R Dueire Lins
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-319-52158-9	Medium
	Area		Expedition		Conference
	Notes	DAG; 600.097; 602.006; 600.121			Approved	no
	Call Number	Admin @ si @ RFL2017			Serial	2955
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	Author	Mireia Sole; Joan Blanco; Debora Gil; G. Fonseka; Richard Frodsham; Oliver Valero; Francesca Vidal; Zaida Sarrate
	Title	Análisis 3d de la territorialidad cromosómica en células espermatogénicas: explorando la infertilidad desde un nuevo prisma			Type	Journal
	Year	2017	Publication	Revista Asociación para el Estudio de la Biología de la Reproducción	Abbreviated Journal	ASEBIR
	Volume	22	Issue	2	Pages	105
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.096; 600.145			Approved	no
	Call Number	Admin @ si @ SBG2017d			Serial	3042
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	Author	Mohammad Ali Bagheri; Qigang Gao; Sergio Escalera; Huamin Ren; Thomas B. Moeslund; Elham Etemad
	Title	Locality Regularized Group Sparse Coding for Action Recognition			Type	Journal Article
	Year	2017	Publication	Computer Vision and Image Understanding	Abbreviated Journal	CVIU
	Volume	158	Issue		Pages	106-114
	Keywords	Bag of words; Feature encoding; Locality constrained coding; Group sparse coding; Alternating direction method of multipliers; Action recognition
	Abstract	Bag of visual words (BoVW) models are widely utilized in image/ video representation and recognition. The cornerstone of these models is the encoding stage, in which local features are decomposed over a codebook in order to obtain a representation of features. In this paper, we propose a new encoding algorithm by jointly encoding the set of local descriptors of each sample and considering the locality structure of descriptors. The proposed method takes advantages of locality coding such as its stability and robustness to noise in descriptors, as well as the strengths of the group coding strategy by taking into account the potential relation among descriptors of a sample. To efficiently implement our proposed method, we consider the Alternating Direction Method of Multipliers (ADMM) framework, which results in quadratic complexity in the problem size. The method is employed for a challenging classification problem: action recognition by depth cameras. Experimental results demonstrate the outperformance of our methodology compared to the state-of-the-art on the considered datasets.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA; no proj			Approved	no
	Call Number	Admin @ si @ BGE2017			Serial	3014
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	Author	Pau Riba; Josep Llados; Alicia Fornes
	Title	Error-tolerant coarse-to-fine matching model for hierarchical graphs			Type	Conference Article
	Year	2017	Publication	11th IAPR-TC-15 International Workshop on Graph-Based Representations in Pattern Recognition	Abbreviated Journal
	Volume	10310	Issue		Pages	107-117
	Keywords	Graph matching; Hierarchical graph; Graph-based representation; Coarse-to-fine matching
	Abstract	Graph-based representations are effective tools to capture structural information from visual elements. However, retrieving a query graph from a large database of graphs implies a high computational complexity. Moreover, these representations are very sensitive to noise or small changes. In this work, a novel hierarchical graph representation is designed. Using graph clustering techniques adapted from graph-based social media analysis, we propose to generate a hierarchy able to deal with different levels of abstraction while keeping information about the topology. For the proposed representations, a coarse-to-fine matching method is defined. These approaches are validated using real scenarios such as classification of colour images and handwritten word spotting.
	Address	Anacapri; Italy; May 2017
	Corporate Author				Thesis
	Publisher	Springer International Publishing	Place of Publication		Editor	Pasquale Foggia; Cheng-Lin Liu; Mario Vento
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	GbRPR
	Notes	DAG; 600.097; 601.302; 600.121			Approved	no
	Call Number	Admin @ si @ RLF2017a			Serial	2951
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	Author	Katerine Diaz; Konstantia Georgouli; Anastasios Koidis; Jesus Martinez del Rincon
	Title	Incremental model learning for spectroscopy-based food analysis			Type	Journal Article
	Year	2017	Publication	Chemometrics and Intelligent Laboratory Systems	Abbreviated Journal	CILS
	Volume	167	Issue		Pages	123-131
	Keywords	Incremental model learning; IGDCV technique; Subspace based learning; IdentificationVegetable oils; FT-IR spectroscopy
	Abstract	In this paper we propose the use of incremental learning for creating and improving multivariate analysis models in the field of chemometrics of spectral data. As main advantages, our proposed incremental subspace-based learning allows creating models faster, progressively improving previously created models and sharing them between laboratories and institutions without requiring transferring or disclosing individual spectra samples. In particular, our approach allows to improve the generalization and adaptability of previously generated models with a few new spectral samples to be applicable to real-world situations. The potential of our approach is demonstrated using vegetable oil type identification based on spectroscopic data as case study. Results show how incremental models maintain the accuracy of batch learning methodologies while reducing their computational cost and handicaps.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.118			Approved	no
	Call Number	Admin @ si @ DGK2017			Serial	3002
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	Author	Debora Gil; Oriol Ramos Terrades; Elisa Minchole; Carles Sanchez; Noelia Cubero de Frutos; Marta Diez-Ferrer; Rosa Maria Ortiz; Antoni Rosell
	Title	Classification of Confocal Endomicroscopy Patterns for Diagnosis of Lung Cancer			Type	Conference Article
	Year	2017	Publication	6th Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging	Abbreviated Journal
	Volume	10550	Issue		Pages	151-159
	Keywords
	Abstract	Confocal Laser Endomicroscopy (CLE) is an emerging imaging technique that allows the in-vivo acquisition of cell patterns of potentially malignant lesions. Such patterns could discriminate between inflammatory and neoplastic lesions and, thus, serve as a first in-vivo biopsy to discard cases that do not actually require a cell biopsy. The goal of this work is to explore whether CLE images obtained during videobronchoscopy contain enough visual information to discriminate between benign and malign peripheral lesions for lung cancer diagnosis. To do so, we have performed a pilot comparative study with 12 patients (6 adenocarcinoma and 6 benign-inflammatory) using 2 different methods for CLE pattern analysis: visual analysis by 3 experts and a novel methodology that uses graph methods to find patterns in pre-trained feature spaces. Our preliminary results indicate that although visual analysis can only achieve a 60.2% of accuracy, the accuracy of the proposed unsupervised image pattern classification raises to 84.6%. We conclude that CLE images visual information allow in-vivo detection of neoplastic lesions and graph structural analysis applied to deep-learning feature spaces can achieve competitive results.
	Address	Quebec; Canada; September 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	CLIP
	Notes	IAM; 600.096; 600.075; 600.145			Approved	no
	Call Number	Admin @ si @ GRM2017			Serial	2957
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	Author	Antonio Lopez; Atsushi Imiya; Tomas Pajdla; Jose Manuel Alvarez
	Title	Computer Vision in Vehicle Technology: Land, Sea & Air			Type	Book Whole
	Year	2017	Publication		Abbreviated Journal
	Volume		Issue		Pages	161-163
	Keywords
	Abstract	Summary This chapter examines different vision-based commercial solutions for real-live problems related to vehicles. It is worth mentioning the recent astonishing performance of deep convolutional neural networks (DCNNs) in difficult visual tasks such as image classification, object recognition/localization/detection, and semantic segmentation. In fact, different DCNN architectures are already being explored for low-level tasks such as optical flow and disparity computation, and higher level ones such as place recognition.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-1-118-86807-2	Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.118			Approved	no
	Call Number	Admin @ si @ LIP2017a			Serial	2937
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	Author	Pau Riba; Josep Llados; Alicia Fornes; Anjan Dutta
	Title	Large-scale graph indexing using binary embeddings of node contexts for information spotting in document image databases			Type	Journal Article
	Year	2017	Publication	Pattern Recognition Letters	Abbreviated Journal	PRL
	Volume	87	Issue		Pages	203-211
	Keywords
	Abstract	Graph-based representations are experiencing a growing usage in visual recognition and retrieval due to their representational power in front of classical appearance-based representations. However, retrieving a query graph from a large dataset of graphs implies a high computational complexity. The most important property for a large-scale retrieval is the search time complexity to be sub-linear in the number of database examples. With this aim, in this paper we propose a graph indexation formalism applied to visual retrieval. A binary embedding is defined as hashing keys for graph nodes. Given a database of labeled graphs, graph nodes are complemented with vectors of attributes representing their local context. Then, each attribute vector is converted to a binary code applying a binary-valued hash function. Therefore, graph retrieval is formulated in terms of finding target graphs in the database whose nodes have a small Hamming distance from the query nodes, easily computed with bitwise logical operators. As an application example, we validate the performance of the proposed methods in different real scenarios such as handwritten word spotting in images of historical documents or symbol spotting in architectural floor plans.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; 600.097; 602.006; 603.053; 600.121			Approved	no
	Call Number	RLF2017b			Serial	2873
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	Author	Cristina Palmero; Jordi Esquirol; Vanessa Bayo; Miquel Angel Cos; Pouya Ahmadmonfared; Joan Salabert; David Sanchez; Sergio Escalera
	Title	Automatic Sleep System Recommendation by Multi-modal RBG-Depth-Pressure Anthropometric Analysis			Type	Journal Article
	Year	2017	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	122	Issue	2	Pages	212–227
	Keywords	Sleep system recommendation; RGB-Depth data Pressure imaging; Anthropometric landmark extraction; Multi-part human body segmentation
	Abstract	This paper presents a novel system for automatic sleep system recommendation using RGB, depth and pressure information. It consists of a validated clinical knowledge-based model that, along with a set of prescription variables extracted automatically, obtains a personalized bed design recommendation. The automatic process starts by performing multi-part human body RGB-D segmentation combining GrabCut, 3D Shape Context descriptor and Thin Plate Splines, to then extract a set of anthropometric landmark points by applying orthogonal plates to the segmented human body. The extracted variables are introduced to the computerized clinical model to calculate body circumferences, weight, morphotype and Body Mass Index categorization. Furthermore, pressure image analysis is performed to extract pressure values and at-risk points, which are also introduced to the model to eventually obtain the final prescription of mattress, topper, and pillow. We validate the complete system in a set of 200 subjects, showing accurate category classification and high correlation results with respect to manual measures.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA;MILAB; 303.100			Approved	no
	Call Number	Admin @ si @ PEB2017			Serial	2765
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	Author	German Ros; Laura Sellart; Gabriel Villalonga; Elias Maidanik; Francisco Molero; Marc Garcia; Adriana Cedeño; Francisco Perez; Didier Ramirez; Eduardo Escobar; Jose Luis Gomez; David Vazquez; Antonio Lopez
	Title	Semantic Segmentation of Urban Scenes via Domain Adaptation of SYNTHIA			Type	Book Chapter
	Year	2017	Publication	Domain Adaptation in Computer Vision Applications	Abbreviated Journal
	Volume	12	Issue		Pages	227-241
	Keywords	SYNTHIA; Virtual worlds; Autonomous Driving
	Abstract	Vision-based semantic segmentation in urban scenarios is a key functionality for autonomous driving. Recent revolutionary results of deep convolutional neural networks (DCNNs) foreshadow the advent of reliable classifiers to perform such visual tasks. However, DCNNs require learning of many parameters from raw images; thus, having a sufficient amount of diverse images with class annotations is needed. These annotations are obtained via cumbersome, human labour which is particularly challenging for semantic segmentation since pixel-level annotations are required. In this chapter, we propose to use a combination of a virtual world to automatically generate realistic synthetic images with pixel-level annotations, and domain adaptation to transfer the models learnt to correctly operate in real scenarios. We address the question of how useful synthetic data can be for semantic segmentation – in particular, when using a DCNN paradigm. In order to answer this question we have generated a synthetic collection of diverse urban images, named SYNTHIA, with automatically generated class annotations and object identifiers. We use SYNTHIA in combination with publicly available real-world urban images with manually provided annotations. Then, we conduct experiments with DCNNs that show that combining SYNTHIA with simple domain adaptation techniques in the training stage significantly improves performance on semantic segmentation.
	Address
	Corporate Author				Thesis
	Publisher	Springer	Place of Publication		Editor	Gabriela Csurka
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.085; 600.082; 600.076; 600.118			Approved	no
	Call Number	ADAS @ adas @ RSV2017			Serial	2882
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	Author	Antonio Lopez; Jiaolong Xu; Jose Luis Gomez; David Vazquez; German Ros
	Title	From Virtual to Real World Visual Perception using Domain Adaptation -- The DPM as Example			Type	Book Chapter
	Year	2017	Publication	Domain Adaptation in Computer Vision Applications	Abbreviated Journal
	Volume		Issue	13	Pages	243-258
	Keywords	Domain Adaptation
	Abstract	Supervised learning tends to produce more accurate classifiers than unsupervised learning in general. This implies that training data is preferred with annotations. When addressing visual perception challenges, such as localizing certain object classes within an image, the learning of the involved classifiers turns out to be a practical bottleneck. The reason is that, at least, we have to frame object examples with bounding boxes in thousands of images. A priori, the more complex the model is regarding its number of parameters, the more annotated examples are required. This annotation task is performed by human oracles, which ends up in inaccuracies and errors in the annotations (aka ground truth) since the task is inherently very cumbersome and sometimes ambiguous. As an alternative we have pioneered the use of virtual worlds for collecting such annotations automatically and with high precision. However, since the models learned with virtual data must operate in the real world, we still need to perform domain adaptation (DA). In this chapter we revisit the DA of a deformable part-based model (DPM) as an exemplifying case of virtual- to-real-world DA. As a use case, we address the challenge of vehicle detection for driver assistance, using different publicly available virtual-world data. While doing so, we investigate questions such as: how does the domain gap behave due to virtual-vs-real data with respect to dominant object appearance per domain, as well as the role of photo-realism in the virtual world.
	Address
	Corporate Author				Thesis
	Publisher	Springer	Place of Publication		Editor	Gabriela Csurka
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.085; 601.223; 600.076; 600.118			Approved	no
	Call Number	ADAS @ adas @ LXG2017			Serial	2872
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	Author	Bojana Gajic; Eduard Vazquez; Ramon Baldrich
	Title	Evaluation of Deep Image Descriptors for Texture Retrieval			Type	Conference Article
	Year	2017	Publication	Proceedings of the 12th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2017)	Abbreviated Journal
	Volume		Issue		Pages	251-257
	Keywords	Texture Representation; Texture Retrieval; Convolutional Neural Networks; Psychophysical Evaluation
	Abstract	The increasing complexity learnt in the layers of a Convolutional Neural Network has proven to be of great help for the task of classification. The topic has received great attention in recently published literature. Nonetheless, just a handful of works study low-level representations, commonly associated with lower layers. In this paper, we explore recent findings which conclude, counterintuitively, the last layer of the VGG convolutional network is the best to describe a low-level property such as texture. To shed some light on this issue, we are proposing a psychophysical experiment to evaluate the adequacy of different layers of the VGG network for texture retrieval. Results obtained suggest that, whereas the last convolutional layer is a good choice for a specific task of classification, it might not be the best choice as a texture descriptor, showing a very poor performance on texture retrieval. Intermediate layers show the best performance, showing a good combination of basic filters, as in the primary visual cortex, and also a degree of higher level information to describe more complex textures.
	Address	Porto, Portugal; 27 February – 1 March 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	VISIGRAPP
	Notes	CIC; 600.087			Approved	no
	Call Number	Admin @ si @			Serial	3710
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	Author	Jean-Pascal Jacob; Mariella Dimiccoli; L. Moisan
	Title	Active skeleton for bacteria modelling			Type	Journal Article
	Year	2017	Publication	Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization	Abbreviated Journal	CMBBE
	Volume	5	Issue	4	Pages	274-286
	Keywords
	Abstract	The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modelling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness and orientation), an improved boundary accuracy in noisy images and a natural bacteria-centred coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimising an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modelling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at http://fluobactracker.inrialpes.fr.
	Address
	Corporate Author				Thesis
	Publisher	Taylor & Francis Group	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @JDM2017			Serial	2784
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