Abstract: Despite being very successful within the pattern recognition and machine learning community, graph-based methods are often unusable because of the lack of mathematical operations defined in graph domain. Graph embedding, which maps graphs to a vectorial space, has been proposed as a way to tackle these difficulties enabling the use of standard machine learning techniques. However, it is well known that graph embedding functions usually suffer from the loss of structural information. In this paper, we consider the hierarchical structure of a graph as a way to mitigate this loss of information. The hierarchical structure is constructed by topologically clustering the graph nodes and considering each cluster as a node in the upper hierarchical level. Once this hierarchical structure is constructed, we consider several configurations to define the mapping into a vector space given a classical graph embedding, in particular, we propose to make use of the stochastic graphlet embedding (SGE). Broadly speaking, SGE produces a distribution of uniformly sampled low-to-high-order graphlets as a way to embed graphs into the vector space. In what follows, the coarse-to-fine structure of a graph hierarchy and the statistics fetched by the SGE complements each other and includes important structural information with varied contexts. Altogether, these two techniques substantially cope with the usual information loss involved in graph embedding techniques, obtaining a more robust graph representation. This fact has been corroborated through a detailed experimental evaluation on various benchmark graph datasets, where we outperform the state-of-the-art methods.

Abstract: Manual transcription of handwritten text is a time consuming task. In the case of encrypted manuscripts, the recognition is even more complex due to the huge variety of alphabets and symbol sets. To speed up and ease this process, we present a web-based tool aimed to (semi)-automatically transcribe the encrypted sources. The user uploads one or several images of the desired encrypted document(s) as input, and the system returns the transcription(s). This process is carried out in an interactive fashion with
the user to obtain more accurate results. For discovering and testing, the developed web tool is freely available.

Abstract: When transcribing handwritten document images, inaccuracies in the text segmentation step often cause errors in the subsequent transcription step. For this reason, some recent methods propose to perform the recognition at paragraph level. But still, errors in the segmentation of paragraphs can affect
the transcription performance. In this work, we propose an end-to-end framework to transcribe full pages. The joint text detection and transcription allows to remove the layout analysis requirement at test time. The experimental results show that our approach can achieve comparable results to models that assume
segmented paragraphs, and suggest that joining the two tasks brings an improvement over doing the two tasks separately.

Abstract: Tabular structures in documents offer a complementary dimension to the raw textual data, representing logical or quantitative relationships among pieces of information. In digital mail room applications, where a large amount of
administrative documents must be processed with reasonable accuracy, the detection and interpretation of tables is crucial. Table recognition has gained interest in document image analysis, in particular in unconstrained formats (absence of rule lines, unknown information of rows and columns). In this work, we propose a graph-based approach for detecting tables in document images. Instead of using the raw content (recognized text), we make use of the location, context and content type, thus it is purely a structure perception approach, not dependent on the language and the quality of the text
reading. Our framework makes use of Graph Neural Networks (GNNs) in order to describe the local repetitive structural information of tables in invoice documents. Our proposed model has been experimentally validated in two invoice datasets and achieved encouraging results. Additionally, due to the scarcity
of benchmark datasets for this task, we have contributed to the community a novel dataset derived from the RVL-CDIP invoice data. It will be publicly released to facilitate future research.

Abstract: Segmentation of airways in Computed Tomography (CT) scans is a must for accurate support of diagnosis and intervention of many pulmonary disorders. In particular, lung cancer diagnosis would benefit from segmentations reaching most distal airways. We present a method that combines descriptors of bronchi local appearance and graph global structural analysis to fine-tune thresholds on the descriptors adapted for each bronchial level. We have compared our method to the top performers of the EXACT09 challenge and to a commercial software for biopsy planning evaluated in an own-collected data-base of high resolution CT scans acquired under different breathing conditions. Results on EXACT09 data show that our method provides a high leakage reduction with minimum loss in airway detection. Results on our data-base show the reliability across varying breathing conditions and a competitive performance for biopsy planning compared to a commercial solution.

Abstract: State of the art machine learning methods need huge amounts of data with unambiguous annotations for their training. In the context of medical imaging this is, in general, a very difficult task due to limited access to clinical data, the time required for manual annotations and variability across experts. Simulated data could serve for data augmentation provided that its appearance was comparable to the actual appearance of intra-operative acquisitions. Generative Adversarial Networks (GANs) are a powerful tool for artistic style transfer, but lack a criteria for selecting epochs ensuring also preservation of intra-operative content.
We propose a multi-objective optimization strategy for a selection of cycleGAN epochs ensuring a mapping between virtual images and the intra-operative domain preserving anatomical content. Our approach has been applied to simulate intra-operative bronchoscopic videos and chest CT scans from virtual sketches generated using simple graphical primitives.