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Author Adriana Romero; Simeon Petkov; Carlo Gatta; M.Sabate; Petia Radeva edit   pdf
openurl 
  Title Efficient automatic segmentation of vessels Type Conference Article
  Year 2012 Publication 16th Conference on Medical Image Understanding and Analysis Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract  
  Address Swansea, United Kingdom  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MIUA  
  Notes MILAB Approved no  
  Call Number Admin @ si @ Serial 2137  
Permanent link to this record
 

 
Author Francesco Ciompi; Oriol Pujol; E Fernandez-Nofrerias; J. Mauri; Petia Radeva edit  openurl
  Title Conditional Random Fields for image segmentation in Intravascular Ultrasound Type Conference Article
  Year 2010 Publication Medical Image Computing in Catalunya: Graduate Student Workshop Abbreviated Journal  
  Volume Issue Pages 13–14  
  Keywords  
  Abstract We present a Conditional Random Fields based approach for segmenting Intravascular Ultrasond (IVUS) images. The presented method uses a contextual discriminative graphical model to deal with the presence of distorsions and artifacts in IVUS images, that turns the segmentation of interesting regions into a difficult task. An accurate lumen segmentation on IVUS longitudinal images is achieved.  
  Address Girona  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAT  
  Notes MILAB;HUPBA Approved no  
  Call Number BCNPCL @ bcnpcl @ CPF2010 Serial 1453  
Permanent link to this record
 

 
Author Pierluigi Casale; Oriol Pujol; Petia Radeva edit  openurl
  Title Classyfing Agitation in Sedated ICU Patients Type Conference Article
  Year 2010 Publication Medical Image Computing in Catalunya: Graduate Student Workshop Abbreviated Journal  
  Volume Issue Pages 19–20  
  Keywords  
  Abstract Agitation is a serious problem in sedated intensive care unit (ICU) patients. In this work, standard machine learning techniques working on wearable accelerometer data have been used to classifying agitation levels achieving very good classification performances.  
  Address Girona  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAT  
  Notes MILAB;HUPBA Approved no  
  Call Number BCNPCL @ bcnpcl @ COR2010 Serial 1467  
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Author Antonio Hernandez; Carlo Gatta; Petia Radeva; Laura Igual; R. Letaz; Sergio Escalera edit  openurl
  Title Automatic Vessel Segmentation For Angiography and CT Registration Type Conference Article
  Year 2010 Publication Medical Image Computing in Catalunya: Graduate Student Workshop Abbreviated Journal  
  Volume Issue Pages 1–2  
  Keywords  
  Abstract  
  Address Girona  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAT  
  Notes MILAB;HUPBA Approved no  
  Call Number BCNPCL @ bcnpcl @ HGR2010 Serial 1474  
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Author Michal Drozdzal; Laura Igual; Jordi Vitria; Petia Radeva; Carolina Malagelada; Fernando Azpiroz edit  openurl
  Title SIFT flow-based Sequences Alignment Type Conference Article
  Year 2010 Publication Medical Image Computing in Catalunya: Graduate Student Workshop Abbreviated Journal  
  Volume Issue Pages 7–8  
  Keywords  
  Abstract  
  Address Girona, Spain  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAT  
  Notes OR;MILAB;MV Approved no  
  Call Number BCNPCL @ bcnpcl @ DIV2010 Serial 1475  
Permanent link to this record
 

 
Author Miguel Reyes; Jordi Vitria; Petia Radeva; Sergio Escalera edit   pdf
openurl 
  Title Real-time Activity Monitoring of Inpatients Type Conference Article
  Year 2010 Publication Medical Image Computing in Catalunya: Graduate Student Workshop Abbreviated Journal  
  Volume Issue Pages 35–36  
  Keywords  
  Abstract In this paper, we present the development of an application capable of monitoring a set of patient vital signs in real time. The application has been designed to support the medical staff of a hospital. Preliminary results show the suitability
of the system to prevent the injury produced by the agitation of the patients.
 
  Address Girona  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAT  
  Notes OR;MILAB;HUPBA;MV Approved no  
  Call Number BCNPCL @ bcnpcl @ RVR2010 Serial 1477  
Permanent link to this record
 

 
Author Santiago Segui; Michal Drozdzal; Petia Radeva; Jordi Vitria edit  openurl
  Title Severe Motility Diagnosis using WCE Type Conference Article
  Year 2010 Publication Medical Image Computing in Catalunya: Graduate Student Workshop Abbreviated Journal  
  Volume Issue Pages 45–46  
  Keywords  
  Abstract  
  Address Girona, Spain  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAT  
  Notes OR;MILAB;MV Approved no  
  Call Number BCNPCL @ bcnpcl @ SDR2010 Serial 1478  
Permanent link to this record
 

 
Author Ferran Poveda; Jaume Garcia; Enric Marti; Debora Gil edit   pdf
openurl 
  Title Validation of the myocardial architecture in DT-MRI tractography Type Conference Article
  Year 2010 Publication Medical Image Computing in Catalunya: Graduate Student Workshop Abbreviated Journal  
  Volume Issue Pages 29-30  
  Keywords  
  Abstract Deep understanding of myocardial structure may help to link form and funcion of the heart unraveling crucial knowledge for medical and surgical clinical procedures and studies. In this work we introduce two visualization techniques based on DT-MRI streamlining able to decipher interesting properties of the architectural organization of the heart.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Girona (Spain) Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAT  
  Notes IAM Approved no  
  Call Number IAM @ iam @ PGM2010 Serial 1626  
Permanent link to this record
 

 
Author Jose Marone; Simone Balocco; Marc Bolaños; Jose Massa; Petia Radeva edit   pdf
openurl 
  Title Learning the Lumen Border using a Convolutional Neural Networks classifier Type Conference Article
  Year 2016 Publication 19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshop Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract IntraVascular UltraSound (IVUS) is a technique allowing the diagnosis of coronary plaque. An accurate (semi-)automatic assessment of the luminal contours could speed up the diagnosis. In most of the approaches, the information on the vessel shape is obtained combining a supervised learning step with a local refinement algorithm. In this paper, we explore for the first time, the use of a Convolutional Neural Networks (CNN) architecture that on one hand is able to extract the optimal image features and at the same time can serve as a supervised classifier to detect the lumen border in IVUS images. The main limitation of CNN, relies on the fact that this technique requires a large amount of training data due to the huge amount of parameters that it has. To
solve this issue, we introduce a patch classification approach to generate an extended training-set from a few annotated images. An accuracy of 93% and F-score of 71% was obtained with this technique, even when it was applied to challenging frames containig calcified plaques, stents and catheter shadows.
 
  Address Athens; Greece; October 2016  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAIW  
  Notes MILAB; Approved no  
  Call Number Admin @ si @ MBB2016 Serial 2822  
Permanent link to this record
 

 
Author Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil edit   pdf
openurl 
  Title Stable Anatomical Structure Tracking for video-bronchoscopy Navigation Type Conference Article
  Year 2016 Publication 19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops Abbreviated Journal  
  Volume Issue Pages  
  Keywords Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking  
  Abstract Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at di erent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations.  
  Address Athens; Greece; October 2016  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAIW  
  Notes IAM; 600.075 Approved no  
  Call Number Admin @ si @ LSB2016b Serial 2857  
Permanent link to this record
 

 
Author Carles Sanchez; Debora Gil; Jorge Bernal; F. Javier Sanchez; Marta Diez-Ferrer; Antoni Rosell edit   pdf
openurl 
  Title Navigation Path Retrieval from Videobronchoscopy using Bronchial Branches Type Conference Article
  Year 2016 Publication 19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops Abbreviated Journal  
  Volume 9401 Issue Pages 62-70  
  Keywords Bronchoscopy navigation; Lumen center; Brochial branches; Navigation path; Videobronchoscopy  
  Abstract Bronchoscopy biopsy can be used to diagnose lung cancer without risking complications of other interventions like transthoracic needle aspiration. During bronchoscopy, the clinician has to navigate through the bronchial tree to the target lesion. A main drawback is the difficulty to check whether the exploration is following the correct path. The usual guidance using fluoroscopy implies repeated radiation of the clinician, while alternative systems (like electromagnetic navigation) require specific equipment that increases intervention costs. We propose to compute the navigated path using anatomical landmarks extracted from the sole analysis of videobronchoscopy images. Such landmarks allow matching the current exploration to the path previously planned on a CT to indicate clinician whether the planning is being correctly followed or not. We present a feasibility study of our landmark based CT-video matching using bronchoscopic videos simulated on a virtual bronchoscopy interactive interface.  
  Address Quebec; Canada; September 2016  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAIW  
  Notes IAM; MV; 600.060; 600.075 Approved no  
  Call Number Admin @ si @ SGB2016 Serial 2885  
Permanent link to this record
 

 
Author Simone Balocco; Francesco Ciompi; Juan Rigla; Xavier Carrillo; Josefina Mauri; Petia Radeva edit   pdf
openurl 
  Title Intra-Coronary Stent localization In Intravascular Ultrasound Sequences, A Preliminary Study Type Conference Article
  Year 2017 Publication International workshop on Computing and Visualization for Intravascular Imaging and Computer Assisted Stenting (CVII-STENT) Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract An intraluminal coronary stent is a metal scaold deployed in a stenotic artery during Percutaneous Coronary Intervention (PCI).
Intravascular Ultrasound (IVUS) is a catheter-based imaging technique generally used for assessing the correct placement of the stent. All the approaches proposed so far for the stent analysis only focused on the struts detection, while this paper proposes a novel approach to detect the boundaries and the position of the stent along the pullback.
The pipeline of the method requires the identication of the stable frames
of the sequence and the reliable detection of stent struts. Using this data,
a measure of likelihood for a frame to contain a stent is computed. Then,
a robust binary representation of the presence of the stent in the pullback
is obtained applying an iterative and multi-scale approximation of the signal to symbols using the SAX algorithm. Results obtained comparing the automatic results versus the manual annotation of two observers on 80 IVUS in-vivo sequences shows that the method approaches the inter-observer variability scores.
 
  Address Quebec; Canada; September 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAIW  
  Notes MILAB; no proj Approved no  
  Call Number Admin @ si @ BCR2017 Serial 2968  
Permanent link to this record
 

 
Author Esmitt Ramirez; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil edit   pdf
url  openurl
  Title Image-Based Bronchial Anatomy Codification for Biopsy Guiding in Video Bronchoscopy Type Conference Article
  Year 2018 Publication OR 2.0 Context-Aware Operating Theaters, Computer Assisted Robotic Endoscopy, Clinical Image-Based Procedures, and Skin Image Analysis Abbreviated Journal  
  Volume 11041 Issue Pages  
  Keywords Biopsy guiding; Bronchoscopy; Lung biopsy; Intervention guiding; Airway codification  
  Abstract Bronchoscopy examinations allow biopsy of pulmonary nodules with minimum risk for the patient. Even for experienced bronchoscopists, it is difficult to guide the bronchoscope to most distal lesions and obtain an accurate diagnosis. This paper presents an image-based codification of the bronchial anatomy for bronchoscopy biopsy guiding. The 3D anatomy of each patient is codified as a binary tree with nodes representing bronchial levels and edges labeled using their position on images projecting the 3D anatomy from a set of branching points. The paths from the root to leaves provide a codification of navigation routes with spatially consistent labels according to the anatomy observes in video bronchoscopy explorations. We evaluate our labeling approach as a guiding system in terms of the number of bronchial levels correctly codified, also in the number of labels-based instructions correctly supplied, using generalized mixed models and computer-generated data. Results obtained for three independent observers prove the consistency and reproducibility of our guiding system. We trust that our codification based on viewer’s projection might be used as a foundation for the navigation process in Virtual Bronchoscopy systems.  
  Address Granada; September 2018  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAIW  
  Notes IAM; 600.096; 600.075; 601.323; 600.145 Approved no  
  Call Number Admin @ si @ RSB2018b Serial 3137  
Permanent link to this record
 

 
Author Santi Puch; Irina Sanchez; Aura Hernandez-Sabate; Gemma Piella; Vesna Prckovska edit   pdf
url  openurl
  Title Global Planar Convolutions for Improved Context Aggregation in Brain Tumor Segmentation Type Conference Article
  Year 2018 Publication International MICCAI Brainlesion Workshop Abbreviated Journal  
  Volume 11384 Issue Pages 393-405  
  Keywords Brain tumors; 3D fully-convolutional CNN; Magnetic resonance imaging; Global planar convolution  
  Abstract In this work, we introduce the Global Planar Convolution module as a building-block for fully-convolutional networks that aggregates global information and, therefore, enhances the context perception capabilities of segmentation networks in the context of brain tumor segmentation. We implement two baseline architectures (3D UNet and a residual version of 3D UNet, ResUNet) and present a novel architecture based on these two architectures, ContextNet, that includes the proposed Global Planar Convolution module. We show that the addition of such module eliminates the need of building networks with several representation levels, which tend to be over-parametrized and to showcase slow rates of convergence. Furthermore, we provide a visual demonstration of the behavior of GPC modules via visualization of intermediate representations. We finally participate in the 2018 edition of the BraTS challenge with our best performing models, that are based on ContextNet, and report the evaluation scores on the validation and the test sets of the challenge.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAIW  
  Notes ADAS; 600.118 Approved no  
  Call Number Admin @ si @ PSH2018 Serial 3251  
Permanent link to this record
 

 
Author Carlos Martin-Isla; Maryam Asadi-Aghbolaghi; Polyxeni Gkontra; Victor M. Campello; Sergio Escalera; Karim Lekadir edit   pdf
openurl 
  Title Stacked BCDU-net with semantic CMR synthesis: application to Myocardial Pathology Segmentation challenge Type Conference Article
  Year 2020 Publication MYOPS challenge and workshop Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract  
  Address Virtual; October 2020  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference (down) MICCAIW  
  Notes HUPBA Approved no  
  Call Number Admin @ si @ MAG2020 Serial 3518  
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