Abstract: The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modeling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness, orientation), an improved boundary accuracy in noisy images, and a natural bacteria-centered coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimizing an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modeling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at this http URL

Abstract: A long-standing view is that lightness illusions are by-products of strategies employed by the visual system to stabilize its perceptual representation of surface reflectance against changes in illumination. Computationally, one such strategy is to infer reflectance from the retinal image, and to base the lightness percept on this inference. CNNs trained to infer reflectance from images have proven successful at solving this problem under limited conditions. To evaluate whether these CNNs provide suitable starting points for computational models of human lightness perception, we tested a state-of-the-art CNN on several lightness illusions, and compared its behaviour to prior measurements of human performance. We trained a CNN (Yu & Smith, 2019) to infer reflectance from luminance images. The network had a 30-layer hourglass architecture with skip connections. We trained the network via supervised learning on 100K images, rendered in Blender, each showing randomly placed geometric objects (surfaces, cubes, tori, etc.), with random Lambertian reflectance patterns (solid, Voronoi, or low-pass noise), under randomized point+ambient lighting. The renderer also provided the ground-truth reflectance images required for training. After training, we applied the network to several visual illusions. These included the argyle, Koffka-Adelson, snake, White’s, checkerboard assimilation, and simultaneous contrast illusions, along with their controls where appropriate. The CNN correctly predicted larger illusions in the argyle, Koffka-Adelson, and snake images than in their controls. It also correctly predicted an assimilation effect in White's illusion. It did not, however, account for the checkerboard assimilation or simultaneous contrast effects. These results are consistent with the view that at least some lightness phenomena are by-products of a rational approach to inferring stable representations of physical properties from intrinsically ambiguous retinal images. Furthermore, they suggest that CNN models may be a promising starting point for new models of human lightness perception.

Abstract: When light is reflected off a surface, there is a linear relation between the three human photoreceptor responses to the incoming light and the three photoreceptor responses to the reflected light. Different colored surfaces have different linear relations. Recently, Philipona and O'Regan (2006) showed that when this relation is singular in a mathematical sense, then the surface is perceived as having a highly nameable color. Furthermore, white light reflected by that surface is perceived as corresponding precisely to one of the four psychophysically measured unique hues. However, Philipona and O'Regan's approach seems unrelated to classical psychophysical models of color constancy. In this paper we make this link. We begin by transforming cone sensors to spectrally sharpened counterparts. In sharp color space, illumination change can be modeled by simple von Kries type scalings of response values within each of the spectrally sharpened response channels. In this space, Philipona and O'Regan's linear relation is captured by a simple Land-type color designator defined by dividing reflected light by incident light. This link between Philipona and O'Regan's theory and Land's notion of color designator gives the model biological plausibility. We then show that Philipona and O'Regan's singular surfaces are surfaces which are very close to activating only one or only two of such newly defined spectrally sharpened sensors, instead of the usual three. Closeness to zero is quantified in a new simplified measure of singularity which is also shown to relate to the chromaticness of colors. As in Philipona and O'Regan's original work, our new theory accounts for a large variety of psychophysical color data.

Abstract: The estimation of the illuminant of a scene from a digital image has been the goal of a large amount of research in computer vision. Color constancy algorithms have dealt with this problem by defining different heuristics to select a unique solution from within the feasible set. The performance of these algorithms has shown that there is still a long way to go to globally solve this problem as a preliminary step in computer vision. In general, performance evaluation has been done by comparing the angular error between the estimated chromaticity and the chromaticity of a canonical illuminant, which is highly dependent on the image dataset. Recently, some workers have used high-level constraints to estimate illuminants; in this case selection is based on increasing the performance on the subsequent steps of the systems. In this paper we propose a new performance measure, the perceptual angular error. It evaluates the performance of a color constancy algorithm according to the perceptual preferences of humans, or naturalness (instead of the actual optimal solution) and is independent of the visual task. We show the results of a new psychophysical experiment comparing solutions from three different color constancy algorithms. Our results show that in more than a half of the judgments the preferred solution is not the one closest to the optimal solution. Our experiments were performed on a new dataset of images acquired with a calibrated camera with an attached neutral grey sphere, which better copes with the illuminant variations of the scene.

Abstract: Transformer models have shown great success handling long-range interactions, making them a promising tool for modeling video. However, they lack inductive biases and scale quadratically with input length. These limitations are further exacerbated when dealing with the high dimensionality introduced by the temporal dimension. While there are surveys analyzing the advances of Transformers for vision, none focus on an in-depth analysis of video-specific designs. In this survey, we analyze the main contributions and trends of works leveraging Transformers to model video. Specifically, we delve into how videos are handled at the input level first. Then, we study the architectural changes made to deal with video more efficiently, reduce redundancy, re-introduce useful inductive biases, and capture long-term temporal dynamics. In addition, we provide an overview of different training regimes and explore effective self-supervised learning strategies for video. Finally, we conduct a performance comparison on the most common benchmark for Video Transformers (i.e., action classification), finding them to outperform 3D ConvNets even with less computational complexity.

Abstract: This paper describes a general method to address partial occlusions for human detection in still images. The Random Subspace Method (RSM) is chosen for building a classifier ensemble robust against partial occlusions. The component classifiers are chosen on the basis of their individual and combined performance. The main contribution of this work lies in our approach’s capability to improve the detection rate when partial occlusions are present without compromising the detection performance on non occluded data. In contrast to many recent approaches, we propose a method which does not require manual labelling of body parts, defining any semantic spatial components, or using additional data coming from motion or stereo. Moreover, the method can be easily extended to other object classes. The experiments are performed on three large datasets: the INRIA person dataset, the Daimler Multicue dataset, and a new challenging dataset, called PobleSec, in which a considerable number of targets are partially occluded. The different approaches are evaluated at the classification and detection levels for both partially occluded and non-occluded data. The experimental results show that our detector outperforms state-of-the-art approaches in the presence of partial occlusions, while offering performance and reliability similar to those of the holistic approach on non-occluded data. The datasets used in our experiments have been made publicly available for benchmarking purposes

Abstract: Graph-based representations are of broad use and applicability in pattern recognition. They exhibit, however, a major drawback with regards to the processing tools that are available in their domain. Graphembedding into vectorspaces is a growing field among the structural pattern recognition community which aims at providing a feature vector representation for every graph, and thus enables classical statistical learning machinery to be used on graph-based input patterns. In this work, we propose a novel embedding methodology for graphs with continuous nodeattributes and unattributed edges. The approach presented in this paper is based on statistics of the node labels and the edges between them, based on their similarity to a set of representatives. We specifically deal with an important issue of this methodology, namely, the selection of a suitable set of representatives. In an experimental evaluation, we empirically show the advantages of this novel approach in the context of different classification problems using several databases of graphs.