| |
Records |
Links |
|
Author |
Carles Sanchez; Jorge Bernal; Debora Gil; F. Javier Sanchez |
|
| |
Title |
On-line lumen centre detection in gastrointestinal and respiratory endoscopy |
Type |
Conference Article |
| |
Year |
2013 |
Publication |
Second International Workshop Clinical Image-Based Procedures |
Abbreviated Journal |
|
|
| |
Volume |
8361 |
Issue |
|
Pages |
31-38 |
|
| |
Keywords  |
Lumen centre detection; Bronchoscopy; Colonoscopy |
|
| |
Abstract |
We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %). |
|
| |
Address |
Nagoya; Japan; September 2013 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer International Publishing |
Place of Publication |
|
Editor |
Erdt, Marius and Linguraru, Marius George and Oyarzun Laura, Cristina and Shekhar, Raj and Wesarg, Stefan and González Ballester, Miguel Angel and Drechsler, Klaus |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
978-3-319-05665-4 |
Medium |
|
|
| |
Area |
800 |
Expedition |
|
Conference |
CLIP |
|
| |
Notes |
MV; IAM; 600.047; 600.044; 600.060 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ SBG2013 |
Serial |
2302 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil |
|
| |
Title |
Stable Anatomical Structure Tracking for video-bronchoscopy Navigation |
Type |
Conference Article |
| |
Year |
2016 |
Publication |
19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops |
Abbreviated Journal |
|
|
| |
Volume |
|
Issue |
|
Pages |
|
|
| |
Keywords |
Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking |
|
| |
Abstract |
Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at di erent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations. |
|
| |
Address |
Athens; Greece; October 2016 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
MICCAIW |
|
| |
Notes |
IAM; 600.075 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ LSB2016b |
Serial |
2857 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil |
|
| |
Title |
A medial map capturing the essential geometry of organs |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
ISBI Workshop on Open Source Medical Image Analysis software |
Abbreviated Journal |
|
|
| |
Volume |
|
Issue |
|
Pages |
1691 - 1694 |
|
| |
Keywords |
Medial Surface Representation, Volume Reconstruction,Geometry , Image reconstruction , Liver , Manifolds , Shape , Surface morphology , Surface reconstruction |
|
| |
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Accurate computation of one pixel wide medial surfaces is mandatory. Those surfaces must represent faithfully the geometry of the volume. Although morphological methods produce excellent results in 2D, their complexity and quality drops across dimensions, due to a more complex description of pixel neighborhoods. This paper introduces a continuous operator for accurate and efficient computation of medial structures of arbitrary dimension. Our experiments show its higher performance for medical imaging applications in terms of simplicity of medial structures and capability for reconstructing the anatomical volume |
|
| |
Address |
Barcelona,Spain |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
IEEE |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1945-7928 |
ISBN |
978-1-4577-1857-1 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ISBI |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ VGG2012a |
Serial |
1989 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Debora Gil; Agnes Borras; Sergio Vera; Miguel Angel Gonzalez Ballester |
|
| |
Title |
A Validation Benchmark for Assessment of Medial Surface Quality for Medical Applications |
Type |
Conference Article |
| |
Year |
2013 |
Publication |
9th International Conference on Computer Vision Systems |
Abbreviated Journal |
|
|
| |
Volume |
7963 |
Issue |
|
Pages |
334-343 |
|
| |
Keywords |
Medial Surfaces; Shape Representation; Medical Applications; Performance Evaluation |
|
| |
Abstract |
Confident use of medial surfaces in medical decision support systems requires evaluating their quality for detecting pathological deformations and describing anatomical volumes. Validation in the medical imaging field is a challenging task mainly due to the difficulties for getting consensual ground truth. In this paper we propose a validation benchmark for assessing medial surfaces in the context of medical applications. Our benchmark includes a home-made database of synthetic medial surfaces and volumes and specific scores for evaluating surface accuracy, its stability against volume deformations and its capabilities for accurate reconstruction of anatomical volumes. |
|
| |
Address |
Sant Petersburg; Russia; July 2013 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-39401-0 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ICVS |
|
| |
Notes |
IAM; 600.044; 600.060 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ GBV2013 |
Serial |
2300 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Debora Gil; Aura Hernandez-Sabate; Mireia Burnat; Steven Jansen; Jordi Martinez-Vilalta |
|
| |
Title |
Structure-Preserving Smoothing of Biomedical Images |
Type |
Conference Article |
| |
Year |
2009 |
Publication |
13th International Conference on Computer Analysis of Images and Patterns |
Abbreviated Journal |
|
|
| |
Volume |
5702 |
Issue |
|
Pages |
427-434 |
|
| |
Keywords |
non-linear smoothing; differential geometry; anatomical structures segmentation; cardiac magnetic resonance; computerized tomography. |
|
| |
Abstract |
Smoothing of biomedical images should preserve gray-level transitions between adjacent tissues, while restoring contours consistent with anatomical structures. Anisotropic diffusion operators are based on image appearance discontinuities (either local or contextual) and might fail at weak inter-tissue transitions. Meanwhile, the output of block-wise and morphological operations is prone to present a block structure due to the shape and size of the considered pixel neighborhood. In this contribution, we use differential geometry concepts to define a diffusion operator that restricts to image consistent level-sets. In this manner, the final state is a non-uniform intensity image presenting homogeneous inter-tissue transitions along anatomical structures, while smoothing intra-structure texture. Experiments on different types of medical images (magnetic resonance, computerized tomography) illustrate its benefit on a further process (such as segmentation) of images. |
|
| |
Address |
Münster, Germany |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-03766-5 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
CAIP |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ GHB2009 |
Serial |
1527 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez; Debora Gil ; Aura Hernandez-Sabate |
|
| |
Title |
Error Analysis for Lucas-Kanade Based Schemes |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
9th International Conference on Image Analysis and Recognition |
Abbreviated Journal |
|
|
| |
Volume |
7324 |
Issue |
I |
Pages |
184-191 |
|
| |
Keywords |
Optical flow, Confidence measure, Lucas-Kanade, Cardiac Magnetic Resonance |
|
| |
Abstract |
Optical flow is a valuable tool for motion analysis in medical imaging sequences. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in medical sequences. This paper presents an error analysis of Lucas-Kanade schemes in terms of intrinsic design errors and numerical stability of the algorithm. Our analysis provides a confidence measure that is naturally correlated to the accuracy of the flow field. Our experiments show the higher predictive value of our confidence measure compared to existing measures. |
|
| |
Address |
Aveiro, Portugal |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer-Verlag Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
english |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
Campilho, Aurélio and Kamel, Mohamed |
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-31294-6 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ICIAR |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ MGH2012a |
Serial |
1899 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez; Debora Gil; Aura Hernandez-Sabate; Daniel Kondermann |
|
| |
Title |
When Is A Confidence Measure Good Enough? |
Type |
Conference Article |
| |
Year |
2013 |
Publication |
9th International Conference on Computer Vision Systems |
Abbreviated Journal |
|
|
| |
Volume |
7963 |
Issue |
|
Pages |
344-353 |
|
| |
Keywords |
Optical flow, confidence measure, performance evaluation |
|
| |
Abstract |
Confidence estimation has recently become a hot topic in image processing and computer vision.Yet, several definitions exist of the term “confidence” which are sometimes used interchangeably. This is a position paper, in which we aim to give an overview on existing definitions,
thereby clarifying the meaning of the used terms to facilitate further research in this field. Based on these clarifications, we develop a theory to compare confidence measures with respect to their quality. |
|
| |
Address |
St Petersburg; Russia; July 2013 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Link |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-39401-0 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ICVS |
|
| |
Notes |
IAM;ADAS; 600.044; 600.057; 600.060; 601.145 |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ MGH2013a |
Serial |
2218 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez;Debora Gil;Aura Hernandez-Sabate |
|
| |
Title |
A Complete Confidence Framework for Optical Flow |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
12th European Conference on Computer Vision – Workshops and Demonstrations |
Abbreviated Journal |
|
|
| |
Volume |
7584 |
Issue |
2 |
Pages |
124-133 |
|
| |
Keywords |
Optical flow, confidence measures, sparsification plots, error prediction plots |
|
| |
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs, exploring the use of medial manifolds for the representation of multi-organ relations. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer-Verlag |
Place of Publication |
Florence, Italy, October 7-13, 2012 |
Editor |
Andrea Fusiello, Vittorio Murino ,Rita Cucchiara |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
978-3-642-33867-0 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ECCVW |
|
| |
Notes |
IAM;ADAS; |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ MGH2012b |
Serial |
1991 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez; Debora Gil; R.Mester; Aura Hernandez-Sabate |
|
| |
Title |
Local Analysis of Confidence Measures for Optical Flow Quality Evaluation |
Type |
Conference Article |
| |
Year |
2014 |
Publication |
9th International Conference on Computer Vision Theory and Applications |
Abbreviated Journal |
|
|
| |
Volume |
3 |
Issue |
|
Pages |
450-457 |
|
| |
Keywords |
Optical Flow; Confidence Measure; Performance Evaluation. |
|
| |
Abstract |
Optical Flow (OF) techniques facing the complexity of real sequences have been developed in the last years. Even using the most appropriate technique for our specific problem, at some points the output flow might fail to achieve the minimum error required for the system. Confidence measures computed from either input data or OF output should discard those points where OF is not accurate enough for its further use. It follows that evaluating the capabilities of a confidence measure for bounding OF error is as important as the definition
itself. In this paper we analyze different confidence measures and point out their advantages and limitations for their use in real world settings. We also explore the agreement with current tools for their evaluation of confidence measures performance. |
|
| |
Address |
Lisboa; January 2014 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
VISAPP |
|
| |
Notes |
IAM; ADAS; 600.044; 600.060; 600.057; 601.145; 600.076; 600.075 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ MGM2014 |
Serial |
2432 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez; H. Kause; A. Fuster; Aura Hernandez-Sabate; L. Florack; Debora Gil; Hans van Assen |
|
| |
Title |
Factors Affecting Optical Flow Performance in Tagging Magnetic Resonance Imaging |
Type |
Conference Article |
| |
Year |
2014 |
Publication |
17th International Conference on Medical Image Computing and Computer Assisted Intervention |
Abbreviated Journal |
|
|
| |
Volume |
8896 |
Issue |
|
Pages |
231-238 |
|
| |
Keywords |
Optical flow; Performance Evaluation; Synthetic Database; ANOVA; Tagging Magnetic Resonance Imaging |
|
| |
Abstract |
Changes in cardiac deformation patterns are correlated with cardiac pathologies. Deformation can be extracted from tagging Magnetic Resonance Imaging (tMRI) using Optical Flow (OF) techniques. For applications of OF in a clinical setting it is important to assess to what extent the performance of a particular OF method is stable across di erent clinical acquisition artifacts. This paper presents a statistical validation framework, based on ANOVA, to assess the motion and appearance factors that have the largest in uence on OF accuracy drop.
In order to validate this framework, we created a database of simulated tMRI data including the most common artifacts of MRI and test three di erent OF methods, including HARP. |
|
| |
Address |
Boston; USA; September 2014 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer International Publishing |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-319-14677-5 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
STACOM |
|
| |
Notes |
IAM; ADAS; 600.060; 601.145; 600.076; 600.075 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ MKF2014 |
Serial |
2495 |
|
| Permanent link to this record |
