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Author |
Debora Gil; Jordi Gonzalez; Gemma Sanchez (eds) |
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Title |
Computer Vision: Advances in Research and Development |
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Book Whole |
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Year |
2007 |
Publication |
Proceedings of the 2nd CVC International Workshop |
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UAB |
Place of Publication |
Bellaterra (Spain) |
Editor |
Debora Gil; Jordi Gonzalez; Gemma Sanchez |
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2 |
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978-84-935251-4-9 |
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IAM; ISE; DAG |
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Call Number |
IAM @ iam @ GGS2007 |
Serial |
1493 |
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Author |
Aura Hernandez-Sabate; Debora Gil |
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Title |
The Benefits of IVUS Dynamics for Retrieving Stable Models of Arteries |
Type |
Book Chapter |
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Year |
2012 |
Publication |
Intravascular Ultrasound |
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Pages |
185-206 |
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Publisher |
Intech |
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Editor |
Yasuhiro Honda |
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Language |
English |
Summary Language |
english |
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978-953-307-900-4 |
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Notes |
IAM; ADAS |
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no |
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Call Number |
IAM @ iam @ HeG2012 |
Serial |
1684 |
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Author |
H. Martin ; Jens Fagertun; Sergio Vera; Debora Gil |
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Title |
Medial structure generation for registration of anatomical structures |
Type |
Book Chapter |
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Year |
2017 |
Publication |
Skeletonization, Theory, Methods and Applications |
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11 |
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IAM; 600.096; 600.075; 600.145 |
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no |
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Call Number |
Admin @ si @ MFV2017a |
Serial |
2935 |
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Author |
Debora Gil; Oriol Ramos Terrades; Raquel Perez |
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Title |
Topological Radiomics (TOPiomics): Early Detection of Genetic Abnormalities in Cancer Treatment Evolution |
Type |
Book Chapter |
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Year |
2021 |
Publication |
Extended Abstracts GEOMVAP 2019, Trends in Mathematics 15 |
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Volume |
15 |
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Pages |
89–93 |
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Abstract |
Abnormalities in radiomic measures correlate to genomic alterations prone to alter the outcome of personalized anti-cancer treatments. TOPiomics is a new method for the early detection of variations in tumor imaging phenotype from a topological structure in multi-view radiomic spaces. |
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Publisher |
Springer Nature |
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Notes |
IAM; DAG; 600.120; 600.145; 600.139 |
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no |
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Call Number |
Admin @ si @ GRP2021 |
Serial |
3594 |
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Author |
Hanne Kause; Aura Hernandez-Sabate; Patricia Marquez; Andrea Fuster; Luc Florack; Hans van Assen; Debora Gil |
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Title |
Confidence Measures for Assessing the HARP Algorithm in Tagged Magnetic Resonance Imaging |
Type |
Book Chapter |
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Year |
2015 |
Publication |
Statistical Atlases and Computational Models of the Heart. Revised selected papers of Imaging and Modelling Challenges 6th International Workshop, STACOM 2015, Held in Conjunction with MICCAI 2015 |
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Volume |
9534 |
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Pages |
69-79 |
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Abstract |
Cardiac deformation and changes therein have been linked to pathologies. Both can be extracted in detail from tagged Magnetic Resonance Imaging (tMRI) using harmonic phase (HARP) images. Although point tracking algorithms have shown to have high accuracies on HARP images, these vary with position. Detecting and discarding areas with unreliable results is crucial for use in clinical support systems. This paper assesses the capability of two confidence measures (CMs), based on energy and image structure, for detecting locations with reduced accuracy in motion tracking results. These CMs were tested on a database of simulated tMRI images containing the most common artifacts that may affect tracking accuracy. CM performance is assessed based on its capability for HARP tracking error bounding and compared in terms of significant differences detected using a multi comparison analysis of variance that takes into account the most influential factors on HARP tracking performance. Results showed that the CM based on image structure was better suited to detect unreliable optical flow vectors. In addition, it was shown that CMs can be used to detect optical flow vectors with large errors in order to improve the optical flow obtained with the HARP tracking algorithm. |
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Address |
Munich; Germany; January 2015 |
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Publisher |
Springer International Publishing |
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LNCS |
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ISSN |
0302-9743 |
ISBN |
978-3-319-28711-9 |
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Conference |
STACOM |
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Notes |
ADAS; IAM; 600.075; 600.076; 600.060; 601.145 |
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no |
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Call Number |
Admin @ si @ KHM2015 |
Serial |
2734 |
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Author |
Debora Gil; Oriol Rodriguez-Leon; Petia Radeva; Aura Hernandez-Sabate |
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Title |
Assessing Artery Motion Compensation in IVUS |
Type |
Book Chapter |
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Year |
2007 |
Publication |
Computer Analysis Of Images And Patterns |
Abbreviated Journal |
LNCS |
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Volume |
4673 |
Issue |
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Pages |
213-220 |
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Keywords |
validation standards; quality measures; IVUS motion compensation; conservation laws; Fourier development |
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Abstract |
Cardiac dynamics suppression is a main issue for visual improvement and computation of tissue mechanical properties in IntraVascular UltraSound (IVUS). Although in recent times several motion compensation techniques have arisen, there is a lack of objective evaluation of motion reduction in in vivo pullbacks. We consider that the assessment protocol deserves special attention for the sake of a clinical applicability as reliable as possible. Our work focuses on defining a quality measure and a validation protocol assessing IVUS motion compensation. On the grounds of continuum mechanics laws we introduce a novel score measuring motion reduction in in vivo sequences. Synthetic experiments validate the proposed score as measure of motion parameters accuracy; while results in in vivo pullbacks show its reliability in clinical cases. |
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Publisher |
Springerlink |
Place of Publication |
Heidelberg |
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Series Title |
Lecture Notes in Computer Science |
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ISBN |
978-3-540-74271-5 |
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Notes |
IAM;MILAB |
Approved |
no |
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Call Number |
IAM @ iam @ GRR2007 |
Serial |
1540 |
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Author |
Debora Gil; F. Javier Sanchez; Gloria Fernandez Esparrach; Jorge Bernal |
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Title |
3D Stable Spatio-temporal Polyp Localization in Colonoscopy Videos |
Type |
Book Chapter |
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Year |
2015 |
Publication |
Computer-Assisted and Robotic Endoscopy. Revised selected papers of Second International Workshop, CARE 2015, Held in Conjunction with MICCAI 2015 |
Abbreviated Journal |
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Volume |
9515 |
Issue |
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Pages |
140-152 |
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Keywords |
Colonoscopy, Polyp Detection, Polyp Localization, Region Extraction, Watersheds |
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Abstract |
Computational intelligent systems could reduce polyp miss rate in colonoscopy for colon cancer diagnosis and, thus, increase the efficiency of the procedure. One of the main problems of existing polyp localization methods is a lack of spatio-temporal stability in their response. We propose to explore the response of a given polyp localization across temporal windows in order to select
those image regions presenting the highest stable spatio-temporal response.
Spatio-temporal stability is achieved by extracting 3D watershed regions on the
temporal window. Stability in localization response is statistically determined by analysis of the variance of the output of the localization method inside each 3D region. We have explored the benefits of considering spatio-temporal stability in two different tasks: polyp localization and polyp detection. Experimental results indicate an average improvement of 21:5% in polyp localization and 43:78% in polyp detection. |
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LNCS |
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CARE |
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Notes |
IAM; MV; 600.075 |
Approved |
no |
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Call Number |
Admin @ si @ GSF2015 |
Serial |
2733 |
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Author |
David Roche; Debora Gil; Jesus Giraldo |
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Title |
Mathematical modeling of G protein-coupled receptor function: What can we learn from empirical and mechanistic models? |
Type |
Book Chapter |
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Year |
2014 |
Publication |
G Protein-Coupled Receptors – Modeling and Simulation Advances in Experimental Medicine and Biology |
Abbreviated Journal |
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Volume |
796 |
Issue |
3 |
Pages |
159-181 |
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Keywords |
β-arrestin; biased agonism; curve fitting; empirical modeling; evolutionary algorithm; functional selectivity; G protein; GPCR; Hill coefficient; intrinsic efficacy; inverse agonism; mathematical modeling; mechanistic modeling; operational model; parameter optimization; receptor dimer; receptor oligomerization; receptor constitutive activity; signal transduction; two-state model |
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Abstract |
Empirical and mechanistic models differ in their approaches to the analysis of pharmacological effect. Whereas the parameters of the former are not physical constants those of the latter embody the nature, often complex, of biology. Empirical models are exclusively used for curve fitting, merely to characterize the shape of the E/[A] curves. Mechanistic models, on the contrary, enable the examination of mechanistic hypotheses by parameter simulation. Regretfully, the many parameters that mechanistic models may include can represent a great difficulty for curve fitting, representing, thus, a challenge for computational method development. In the present study some empirical and mechanistic models are shown and the connections, which may appear in a number of cases between them, are analyzed from the curves they yield. It may be concluded that systematic and careful curve shape analysis can be extremely useful for the understanding of receptor function, ligand classification and drug discovery, thus providing a common language for the communication between pharmacologists and medicinal chemists. |
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Springer Netherlands |
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ISSN |
0065-2598 |
ISBN |
978-94-007-7422-3 |
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Notes |
IAM; 600.075 |
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no |
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Call Number |
IAM @ iam @ RGG2014 |
Serial |
2197 |
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Author |
Fernando Vilariño; Debora Gil; Petia Radeva |
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Title |
A Novel FLDA Formulation for Numerical Stability Analysis |
Type |
Book Chapter |
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Year |
2004 |
Publication |
Recent Advances in Artificial Intelligence Research and Development |
Abbreviated Journal |
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113 |
Issue |
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Pages |
77-84 |
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Keywords |
Supervised Learning; Linear Discriminant Analysis; Numerical Stability; Computer Vision |
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Abstract |
Fisher Linear Discriminant Analysis (FLDA) is one of the most popular techniques used in classification applying dimensional reduction. The numerical scheme involves the inversion of the within-class scatter matrix, which makes FLDA potentially ill-conditioned when it becomes singular. In this paper we present a novel explicit formulation of FLDA in terms of the eccentricity ratio and eigenvector orientations of the within-class scatter matrix. An analysis of this function will characterize those situations where FLDA response is not reliable because of numerical instability. This can solve common situations of poor classification performance in computer vision. |
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Publisher |
IOS Press |
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Editor |
J. Vitrià, P. Radeva and I. Aguiló |
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978-1-58603-466-5 |
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MV;IAM;MILAB;SIAI |
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Call Number |
IAM @ iam @ VGR2004 |
Serial |
1663 |
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Author |
Jaume Garcia; Debora Gil; Aura Hernandez-Sabate |
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Title |
Endowing Canonical Geometries to Cardiac Structures |
Type |
Book Chapter |
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Year |
2010 |
Publication |
Statistical Atlases And Computational Models Of The Heart |
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6364 |
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Pages |
124-133 |
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Abstract |
International conference on Cardiac electrophysiological simulation challenge
In this paper, we show that canonical (shape-based) geometries can be endowed to cardiac structures using tubular coordinates defined over their medial axis. We give an analytic formulation of these geometries by means of B-Splines. Since B-Splines present vector space structure PCA can be applied to their control points and statistical models relating boundaries and the interior of the anatomical structures can be derived. We demonstrate the applicability in two cardiac structures, the 3D Left Ventricular volume, and the 2D Left-Right ventricle set in 2D Short Axis view. |
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Springer Berlin / Heidelberg |
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Camara, O.; Pop, M.; Rhode, K.; Sermesant, M.; Smith, N.; Young, A. |
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Lecture Notes in Computer Science |
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LNCS |
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IAM |
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Call Number |
IAM @ iam @ GGH2010b |
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1515 |
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