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	Author	Marc Bolaños; Petia Radeva
	Title	Simultaneous Food Localization and Recognition			Type	Conference Article
	Year	2016	Publication	23rd International Conference on Pattern Recognition	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	CoRR abs/1604.07953 The development of automatic nutrition diaries, which would allow to keep track objectively of everything we eat, could enable a whole new world of possibilities for people concerned about their nutrition patterns. With this purpose, in this paper we propose the first method for simultaneous food localization and recognition. Our method is based on two main steps, which consist in, first, produce a food activation map on the input image (i.e. heat map of probabilities) for generating bounding boxes proposals and, second, recognize each of the food types or food-related objects present in each bounding box. We demonstrate that our proposal, compared to the most similar problem nowadays – object localization, is able to obtain high precision and reasonable recall levels with only a few bounding boxes. Furthermore, we show that it is applicable to both conventional and egocentric images.
	Address	Cancun; Mexico; December 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ICPR
	Notes	MILAB; no proj			Approved	no
	Call Number	Admin @ si @ BoR2016			Serial	2834
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	Author	Maria Oliver; G. Haro; Mariella Dimiccoli; B. Mazin; C. Ballester
	Title	A Computational Model for Amodal Completion			Type	Journal Article
	Year	2016	Publication	Journal of Mathematical Imaging and Vision	Abbreviated Journal	JMIV
	Volume	56	Issue	3	Pages	511–534
	Keywords	Perception; visual completion; disocclusion; Bayesian model;relatability; Euler elastica
	Abstract	This paper presents a computational model to recover the most likely interpretation of the 3D scene structure from a planar image, where some objects may occlude others. The estimated scene interpretation is obtained by integrating some global and local cues and provides both the complete disoccluded objects that form the scene and their ordering according to depth. Our method first computes several distal scenes which are compatible with the proximal planar image. To compute these different hypothesized scenes, we propose a perceptually inspired object disocclusion method, which works by minimizing the Euler's elastica as well as by incorporating the relatability of partially occluded contours and the convexity of the disoccluded objects. Then, to estimate the preferred scene we rely on a Bayesian model and define probabilities taking into account the global complexity of the objects in the hypothesized scenes as well as the effort of bringing these objects in their relative position in the planar image, which is also measured by an Euler's elastica-based quantity. The model is illustrated with numerical experiments on, both, synthetic and real images showing the ability of our model to reconstruct the occluded objects and the preferred perceptual order among them. We also present results on images of the Berkeley dataset with provided figure-ground ground-truth labeling.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB; 601.235			Approved	no
	Call Number	Admin @ si @ OHD2016b			Serial	2745
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	Author	Maria Oliver; Gloria Haro; Mariella Dimiccoli; Baptiste Mazin; Coloma Ballester
	Title	A computational model of amodal completion			Type	Conference Article
	Year	2016	Publication	SIAM Conference on Imaging Science	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	This paper presents a computational model to recover the most likely interpretation of the 3D scene structure from a planar image, where some objects may occlude others. The estimated scene interpretation is obtained by integrating some global and local cues and provides both the complete disoccluded objects that form the scene and their ordering according to depth. Our method first computes several distal scenes which are compatible with the proximal planar image. To compute these different hypothesized scenes, we propose a perceptually inspired object disocclusion method, which works by minimizing the Euler's elastica as well as by incorporating the relatability of partially occluded contours and the convexity of the disoccluded objects. Then, to estimate the preferred scene we rely on a Bayesian model and define probabilities taking into account the global complexity of the objects in the hypothesized scenes as well as the effort of bringing these objects in their relative position in the planar image, which is also measured by an Euler's elastica-based quantity. The model is illustrated with numerical experiments on, both, synthetic and real images showing the ability of our model to reconstruct the occluded objects and the preferred perceptual order among them. We also present results on images of the Berkeley dataset with provided figure-ground ground-truth labeling.
	Address	Albuquerque; New Mexico; USA; May 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	IS
	Notes	MILAB; 601.235			Approved	no
	Call Number	Admin @ si @OHD2016a			Serial	2788
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	Author	Mariella Dimiccoli
	Title	Figure-ground segregation: A fully nonlocal approach			Type	Journal Article
	Year	2016	Publication	Vision Research	Abbreviated Journal	VR
	Volume	126	Issue		Pages	308-317
	Keywords	Figure-ground segregation; Nonlocal approach; Directional linear voting; Nonlinear diffusion
	Abstract	We present a computational model that computes and integrates in a nonlocal fashion several configural cues for automatic figure-ground segregation. Our working hypothesis is that the figural status of each pixel is a nonlocal function of several geometric shape properties and it can be estimated without explicitly relying on object boundaries. The methodology is grounded on two elements: multi-directional linear voting and nonlinear diffusion. A first estimation of the figural status of each pixel is obtained as a result of a voting process, in which several differently oriented line-shaped neighborhoods vote to express their belief about the figural status of the pixel. A nonlinear diffusion process is then applied to enforce the coherence of figural status estimates among perceptually homogeneous regions. Computer simulations fit human perception and match the experimental evidence that several cues cooperate in defining figure-ground segregation. The results of this work suggest that figure-ground segregation involves feedback from cells with larger receptive fields in higher visual cortical areas.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ Dim2016b			Serial	2623
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	Author	Tadashi Araki; Sumit K. Banchhor; Narendra D. Londhe; Nobutaka Ikeda; Petia Radeva; Devarshi Shukla; Luca Saba; Antonella Balestrieri; Andrew Nicolaides; Shoaib Shafique; John R. Laird; Jasjit S. Suri
	Title	Reliable and Accurate Calcium Volume Measurement in Coronary Artery Using Intravascular Ultrasound Videos			Type	Journal Article
	Year	2016	Publication	Journal of Medical Systems	Abbreviated Journal	JMS
	Volume	40	Issue	3	Pages	51:1-51:20
	Keywords	Interventional cardiology; Atherosclerosis; Coronary arteries; IVUS; calcium volume; Soft computing; Performance Reliability; Accuracy
	Abstract	Quantitative assessment of calcified atherosclerotic volume within the coronary artery wall is vital for cardiac interventional procedures. The goal of this study is to automatically measure the calcium volume, given the borders of coronary vessel wall for all the frames of the intravascular ultrasound (IVUS) video. Three soft computing fuzzy classification techniques were adapted namely Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) for automated segmentation of calcium regions and volume computation. These methods were benchmarked against previously developed threshold-based method. IVUS image data sets (around 30,600 IVUS frames) from 15 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/s). Calcium mean volume for FCM, K-means, HMRF and threshold-based method were 37.84 ± 17.38 mm3, 27.79 ± 10.94 mm3, 46.44 ± 19.13 mm3 and 35.92 ± 16.44 mm3 respectively. Cross-correlation, Jaccard Index and Dice Similarity were highest between FCM and threshold-based method: 0.99, 0.92 ± 0.02 and 0.95 + 0.02 respectively. Student’s t-test, z-test and Wilcoxon-test are also performed to demonstrate consistency, reliability and accuracy of the results. Given the vessel wall region, the system reliably and automatically measures the calcium volume in IVUS videos. Further, we validated our system against a trained expert using scoring: K-means showed the best performance with an accuracy of 92.80 %. Out procedure and protocol is along the line with method previously published clinically.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ ABL2016			Serial	2729
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	Author	Mariella Dimiccoli; Jean-Pascal Jacob; Lionel Moisan
	Title	Particle detection and tracking in fluorescence time-lapse imaging: a contrario approach			Type	Journal Article
	Year	2016	Publication	Journal of Machine Vision and Applications	Abbreviated Journal	MVAP
	Volume	27	Issue		Pages	511-527
	Keywords	particle detection; particle tracking; a-contrario approach; time-lapse fluorescence imaging
	Abstract	In this work, we propose a probabilistic approach for the detection and the tracking of particles on biological images. In presence of very noised and poor quality data, particles and trajectories can be characterized by an a-contrario model, that estimates the probability of observing the structures of interest in random data. This approach, first introduced in the modeling of human visual perception and then successfully applied in many image processing tasks, leads to algorithms that do not require a previous learning stage, nor a tedious parameter tuning and are very robust to noise. Comparative evaluations against a well established baseline show that the proposed approach outperforms the state of the art.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ DJM2016			Serial	2735
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	Author	Maedeh Aghaei; Mariella Dimiccoli; Petia Radeva
	Title	Multi-face tracking by extended bag-of-tracklets in egocentric photo-streams			Type	Journal Article
	Year	2016	Publication	Computer Vision and Image Understanding	Abbreviated Journal	CVIU
	Volume	149	Issue		Pages	146-156
	Keywords
	Abstract	Wearable cameras offer a hands-free way to record egocentric images of daily experiences, where social events are of special interest. The first step towards detection of social events is to track the appearance of multiple persons involved in them. In this paper, we propose a novel method to find correspondences of multiple faces in low temporal resolution egocentric videos acquired through a wearable camera. This kind of photo-stream imposes additional challenges to the multi-tracking problem with respect to conventional videos. Due to the free motion of the camera and to its low temporal resolution, abrupt changes in the field of view, in illumination condition and in the target location are highly frequent. To overcome such difficulties, we propose a multi-face tracking method that generates a set of tracklets through finding correspondences along the whole sequence for each detected face and takes advantage of the tracklets redundancy to deal with unreliable ones. Similar tracklets are grouped into the so called extended bag-of-tracklets (eBoT), which is aimed to correspond to a specific person. Finally, a prototype tracklet is extracted for each eBoT, where the occurred occlusions are estimated by relying on a new measure of confidence. We validated our approach over an extensive dataset of egocentric photo-streams and compared it to state of the art methods, demonstrating its effectiveness and robustness.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ ADR2016b			Serial	2742
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	Author	Mariella Dimiccoli
	Title	Fundamentals of cone regression			Type	Journal
	Year	2016	Publication	Journal of Statistics Surveys	Abbreviated Journal
	Volume	10	Issue		Pages	53-99
	Keywords	cone regression; linear complementarity problems; proximal operators.
	Abstract	Cone regression is a particular case of quadratic programming that minimizes a weighted sum of squared residuals under a set of linear inequality constraints. Several important statistical problems such as isotonic, concave regression or ANOVA under partial orderings, just to name a few, can be considered as particular instances of the cone regression problem. Given its relevance in Statistics, this paper aims to address the fundamentals of cone regression from a theoretical and practical point of view. Several formulations of the cone regression problem are considered and, focusing on the particular case of concave regression as an example, several algorithms are analyzed and compared both qualitatively and quantitatively through numerical simulations. Several improvements to enhance numerical stability and bound the computational cost are proposed. For each analyzed algorithm, the pseudo-code and its corresponding code in Matlab are provided. The results from this study demonstrate that the choice of the optimization approach strongly impacts the numerical performances. It is also shown that methods are not currently available to solve efficiently cone regression problems with large dimension (more than many thousands of points). We suggest further research to fill this gap by exploiting and adapting classical multi-scale strategy to compute an approximate solution.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1935-7516	ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @Dim2016a			Serial	2783
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	Author	G. de Oliveira; A. Cartas; Marc Bolaños; Mariella Dimiccoli; Xavier Giro; Petia Radeva
	Title	LEMoRe: A Lifelog Engine for Moments Retrieval at the NTCIR-Lifelog LSAT Task			Type	Conference Article
	Year	2016	Publication	12th NTCIR Conference on Evaluation of Information Access Technologies	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Semantic image retrieval from large amounts of egocentric visual data requires to leverage powerful techniques for filling in the semantic gap. This paper introduces LEMoRe, a Lifelog Engine for Moments Retrieval, developed in the context of the Lifelog Semantic Access Task (LSAT) of the the NTCIR-12 challenge and discusses its performance variation on different trials. LEMoRe integrates classical image descriptors with high-level semantic concepts extracted by Convolutional Neural Networks (CNN), powered by a graphic user interface that uses natural language processing. Although this is just a first attempt towards interactive image retrieval from large egocentric datasets and there is a large room for improvement of the system components and the user interface, the structure of the system itself and the way the single components cooperate are very promising.
	Address	Tokyo; Japan; June 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	NTCIR
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @OCB2016			Serial	2789
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	Author	Maria Salamo; Inmaculada Rodriguez; Maite Lopez; Anna Puig; Simone Balocco; Mariona Taule
	Title	Recurso docente para la atención de la diversidad en el aula mediante la predicción de notas			Type	Journal
	Year	2016	Publication	ReVision	Abbreviated Journal
	Volume	9	Issue	1	Pages
	Keywords	Aprendizaje automatico; Sistema de prediccion de notas; Herramienta docente
	Abstract	Desde la implantación del Espacio Europeo de Educación Superior (EEES) en los diferentes grados, se ha puesto de manifiesto la necesidad de utilizar diversos mecanismos que permitan tratar la diversidad en el aula, evaluando automáticamente y proporcionando una retroalimentación rápida tanto al alumnado como al profesorado sobre la evolución de los alumnos en una asignatura. En este artículo se presenta la evaluación de la exactitud en las predicciones de GRADEFORESEER, un recurso docente para la predicción de notas basado en técnicas de aprendizaje automático que permite evaluar la evolución del alumnado y estimar su nota final al terminar el curso. Este recurso se ha complementado con una interfaz de usuario para el profesorado que puede ser usada en diferentes plataformas software (sistemas operativos) y en cualquier asignatura de un grado en la que se utilice evaluación continuada. Además de la descripción del recurso, este artículo presenta los resultados obtenidos al aplicar el sistema de predicción en cuatro asignaturas de disciplinas distintas: Programación I (PI), Diseño de Software (DSW) del grado de Ingeniería Informática, Tecnologías de la Información y la Comunicación (TIC) del grado de Lingüística y la asignatura Fundamentos de Tecnología (FDT) del grado de Información y Documentación, todas ellas impartidas en la Universidad de Barcelona. La capacidad predictiva se ha evaluado de forma binaria (aprueba o no) y según un criterio de rango (suspenso, aprobado, notable o sobresaliente), obteniendo mejores predicciones en los resultados evaluados de forma binaria.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ SRL2016			Serial	2820
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	Author	Jose Marone; Simone Balocco; Marc Bolaños; Jose Massa; Petia Radeva
	Title	Learning the Lumen Border using a Convolutional Neural Networks classiﬁer			Type	Conference Article
	Year	2016	Publication	19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshop	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	IntraVascular UltraSound (IVUS) is a technique allowing the diagnosis of coronary plaque. An accurate (semi-)automatic assessment of the luminal contours could speed up the diagnosis. In most of the approaches, the information on the vessel shape is obtained combining a supervised learning step with a local refinement algorithm. In this paper, we explore for the first time, the use of a Convolutional Neural Networks (CNN) architecture that on one hand is able to extract the optimal image features and at the same time can serve as a supervised classifier to detect the lumen border in IVUS images. The main limitation of CNN, relies on the fact that this technique requires a large amount of training data due to the huge amount of parameters that it has. To solve this issue, we introduce a patch classification approach to generate an extended training-set from a few annotated images. An accuracy of 93% and F-score of 71% was obtained with this technique, even when it was applied to challenging frames containig calcified plaques, stents and catheter shadows.
	Address	Athens; Greece; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MICCAIW
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ MBB2016			Serial	2822
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	Author	Sumit K. Banchhor; Tadashi Araki; Narendra D. Londhe; Nobutaka Ikeda; Petia Radeva; Ayman El-Baz; Luca Saba; Andrew Nicolaides; Shoaib Shafique; John R. Laird; Jasjit S. Suri
	Title	Five multiresolution-based calcium volume measurement techniques from coronary IVUS videos: A comparative approach			Type	Journal Article
	Year	2016	Publication	Computer Methods and Programs in Biomedicine	Abbreviated Journal	CMPB
	Volume	134	Issue		Pages	237-258
	Keywords
	Abstract	BACKGROUND AND OBJECTIVE: Fast intravascular ultrasound (IVUS) video processing is required for calcium volume computation during the planning phase of percutaneous coronary interventional (PCI) procedures. Nonlinear multiresolution techniques are generally applied to improve the processing time by down-sampling the video frames. METHODS: This paper presents four different segmentation methods for calcium volume measurement, namely Threshold-based, Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) embedded with five different kinds of multiresolution techniques (bilinear, bicubic, wavelet, Lanczos, and Gaussian pyramid). This leads to 20 different kinds of combinations. IVUS image data sets consisting of 38,760 IVUS frames taken from 19 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/sec.). The performance of these 20 systems is compared with and without multiresolution using the following metrics: (a) computational time; (b) calcium volume; (c) image quality degradation ratio; and (d) quality assessment ratio. RESULTS: Among the four segmentation methods embedded with five kinds of multiresolution techniques, FCM segmentation combined with wavelet-based multiresolution gave the best performance. FCM and wavelet experienced the highest percentage mean improvement in computational time of 77.15% and 74.07%, respectively. Wavelet interpolation experiences the highest mean precision-of-merit (PoM) of 94.06 ± 3.64% and 81.34 ± 16.29% as compared to other multiresolution techniques for volume level and frame level respectively. Wavelet multiresolution technique also experiences the highest Jaccard Index and Dice Similarity of 0.7 and 0.8, respectively. Multiresolution is a nonlinear operation which introduces bias and thus degrades the image. The proposed system also provides a bias correction approach to enrich the system, giving a better mean calcium volume similarity for all the multiresolution-based segmentation methods. After including the bias correction, bicubic interpolation gives the largest increase in mean calcium volume similarity of 4.13% compared to the rest of the multiresolution techniques. The system is automated and can be adapted in clinical settings. CONCLUSIONS: We demonstrated the time improvement in calcium volume computation without compromising the quality of IVUS image. Among the 20 different combinations of multiresolution with calcium volume segmentation methods, the FCM embedded with wavelet-based multiresolution gave the best performance.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ BAL2016			Serial	2830
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	Author	Alvaro Peris; Marc Bolaños; Petia Radeva; Francisco Casacuberta
	Title	Video Description Using Bidirectional Recurrent Neural Networks			Type	Conference Article
	Year	2016	Publication	25th International Conference on Artificial Neural Networks	Abbreviated Journal
	Volume	2	Issue		Pages	3-11
	Keywords	Video description; Neural Machine Translation; Birectional Recurrent Neural Networks; LSTM; Convolutional Neural Networks
	Abstract	Although traditionally used in the machine translation field, the encoder-decoder framework has been recently applied for the generation of video and image descriptions. The combination of Convolutional and Recurrent Neural Networks in these models has proven to outperform the previous state of the art, obtaining more accurate video descriptions. In this work we propose pushing further this model by introducing two contributions into the encoding stage. First, producing richer image representations by combining object and location information from Convolutional Neural Networks and second, introducing Bidirectional Recurrent Neural Networks for capturing both forward and backward temporal relationships in the input frames.
	Address	Barcelona; September 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ICANN
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ PBR2016			Serial	2833
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	Author	C. Butakoff; Simone Balocco; F.M. Sukno; C. Hoogendoorn; C. Tobon-Gomez; G. Avegliano; A.F. Frangi
	Title	Left-ventricular Epi- and Endocardium Extraction from 3D Ultrasound Images Using an Automatically Constructed 3D ASM			Type	Journal Article
	Year	2016	Publication	Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization	Abbreviated Journal	CMBBE
	Volume	4	Issue	5	Pages	265-280
	Keywords	ASM; cardiac segmentation; statistical model; shape model; 3D ultrasound; cardiac segmentation
	Abstract	In this paper, we propose an automatic method for constructing an active shape model (ASM) to segment the complete cardiac left ventricle in 3D ultrasound (3DUS) images, which avoids costly manual landmarking. The automatic construction of the ASM has already been addressed in the literature; however, the direct application of these methods to 3DUS is hampered by a high level of noise and artefacts. Therefore, we propose to construct the ASM by fusing the multidetector computed tomography data, to learn the shape, with the artificially generated 3DUS, in order to learn the neighbourhood of the boundaries. Our artificial images were generated by two approaches: a faster one that does not take into account the geometry of the transducer, and a more comprehensive one, implemented in Field II toolbox. The segmentation accuracy of our ASM was evaluated on 20 patients with left-ventricular asynchrony, demonstrating plausibility of the approach.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	2168-1163	ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB			Approved	no
	Call Number	Admin @ si @ BBS2016			Serial	2449
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	Author	Jean-Pascal Jacob; Mariella Dimiccoli; Lionel Moisan
	Title	Active skeleton for bacteria modeling			Type	Journal Article
	Year	2016	Publication	Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization	Abbreviated Journal	CMBBE
	Volume	5	Issue	4	Pages	274-286
	Keywords	Bacteria modelling; medial axis; active contours; active skeleton; shape contraints
	Abstract	The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modeling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness, orientation), an improved boundary accuracy in noisy images, and a natural bacteria-centered coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimizing an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modeling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at this http URL
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB			Approved	no
	Call Number	Admin @ si @ JDM2016			Serial	2711
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