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Author |
Carles Sanchez; Debora Gil; Antoni Rosell; Albert Andaluz; F. Javier Sanchez |
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Title |
Segmentation of Tracheal Rings in Videobronchoscopy combining Geometry and Appearance |
Type |
Conference Article |
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Year |
2013 |
Publication |
Proceedings of the International Conference on Computer Vision Theory and Applications |
Abbreviated Journal |
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Volume |
1 |
Issue |
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Pages |
153--161 |
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Keywords |
Video-bronchoscopy, tracheal ring segmentation, trachea geometric and appearance model |
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Abstract |
Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways and minimal invasive interventions. Tracheal procedures are ordinary interventions that require measurement of the percentage of obstructed pathway for injury (stenosis) assessment. Visual assessment of stenosis in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error. Accurate detection of tracheal rings is the basis for automated estimation of the size of stenosed trachea. Processing of videobronchoscopic images acquired at the operating room is a challenging task due to the wide range of artifacts and acquisition conditions. We present a model of the geometric-appearance of tracheal rings for its detection in videobronchoscopic videos. Experiments on sequences acquired at the operating room, show a performance close to inter-observer variability |
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Address |
Barcelona; February 2013 |
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Publisher |
SciTePress |
Place of Publication |
Portugal |
Editor |
Sebastiano Battiato and José Braz |
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LNCS |
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978-989-8565-47-1 |
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800 |
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VISAPP |
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Notes |
IAM;MV; 600.044; 600.047; 600.060; 605.203 |
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no |
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Call Number |
IAM @ iam @ SGR2013 |
Serial |
2123 |
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Permanent link to this record |
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Author |
Joan M. Nuñez; Debora Gil; Fernando Vilariño |
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Title |
Finger joint characterization from X-ray images for rheymatoid arthritis assessment |
Type |
Conference Article |
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Year |
2013 |
Publication |
6th International Conference on Biomedical Electronics and Devices |
Abbreviated Journal |
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Volume |
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Pages |
288-292 |
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Keywords |
Rheumatoid Arthritis; X-Ray; Hand Joint; Sclerosis; Sharp Van der Heijde |
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Abstract |
In this study we propose amodular systemfor automatic rheumatoid arthritis assessment which provides a joint space width measure. A hand joint model is proposed based on the accurate analysis of a X-ray finger joint image sample set. This model shows that the sclerosis and the lower bone are the main necessary features in order to perform a proper finger joint characterization. We propose sclerosis and lower bone detection methods as well as the experimental setup necessary for its performance assessment. Our characterization is used to propose and compute a joint space width score which is shown to be related to the different degrees of arthritis. This assertion is verified by comparing our proposed score with Sharp Van der Heijde score, confirming that the lower our score is the more advanced is the patient affection. |
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Barcelona; February 2013 |
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SciTePress |
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800 |
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BIODEVICES |
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Notes |
IAM;MV; 600.057; 600.054;SIAI |
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no |
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Call Number |
IAM @ iam @ NGV2013 |
Serial |
2196 |
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Author |
Santiago Segui; Michal Drozdzal; Fernando Vilariño; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria |
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Title |
Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy |
Type |
Journal Article |
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Year |
2012 |
Publication |
IEEE Transactions on Information Technology in Biomedicine |
Abbreviated Journal |
TITB |
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Volume |
16 |
Issue |
6 |
Pages |
1341-1352 |
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Abstract |
Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media. |
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ISSN |
1089-7771 |
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800 |
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Notes |
MILAB; MV; OR;SIAI |
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no |
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Call Number |
Admin @ si @ SDV2012 |
Serial |
2124 |
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Author |
Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva |
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Title |
Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions |
Type |
Journal Article |
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Year |
2010 |
Publication |
IEEE Transactions on Medical Imaging |
Abbreviated Journal |
TMI |
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Volume |
29 |
Issue |
2 |
Pages |
246-259 |
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Abstract |
Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions. |
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IEEE |
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ISSN |
0278-0062 |
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800 |
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Notes |
MILAB;MV;OR;SIAI |
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no |
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Call Number |
BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 |
Serial |
1281 |
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Permanent link to this record |
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Author |
Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva |
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Title |
ROC curves and video analysis optimization in intestinal capsule endoscopy |
Type |
Journal Article |
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Year |
2006 |
Publication |
Pattern Recognition Letters |
Abbreviated Journal |
PRL |
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Volume |
27 |
Issue |
8 |
Pages |
875–881 |
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Keywords |
ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy |
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Abstract |
Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions. |
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800 |
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Notes |
MILAB;MV;SIAI |
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no |
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Call Number |
BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006 |
Serial |
647 |
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Permanent link to this record |
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Author |
Jorge Bernal |
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Title |
Polyp Localization and Segmentation in Colonoscopy Images by Means of a Model of Appearance for Polyps |
Type |
Book Whole |
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Year |
2012 |
Publication |
PhD Thesis, Universitat Autonoma de Barcelona-CVC |
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Abstract |
Colorectal cancer is the fourth most common cause of cancer death worldwide and its survival rate depends on the stage in which it is detected on hence the necessity for an early colon screening. There are several screening techniques but colonoscopy is still nowadays the gold standard, although it has some drawbacks such as the miss rate. Our contribution, in the field of intelligent systems for colonoscopy, aims at providing a polyp localization and a polyp segmentation system based on a model of appearance for polyps. To develop both methods we define a model of appearance for polyps, which describes a polyp as enclosed by intensity valleys. The novelty of our contribution resides on the fact that we include in our model aspects of the image formation and we also consider the presence of other elements from the endoluminal scene such as specular highlights and blood vessels, which have an impact on the performance of our methods. In order to develop our polyp localization method we accumulate valley information in order to generate energy maps, which are also used to guide the polyp segmentation. Our methods achieve promising results in polyp localization and segmentation. As we want to explore the usability of our methods we present a comparative analysis between physicians fixations obtained via an eye tracking device and our polyp localization method. The results show that our method is indistinguishable to novice physicians although it is far from expert physicians. |
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Thesis |
Ph.D. thesis |
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Publisher |
Ediciones Graficas Rey |
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Editor |
F. Javier Sanchez;Fernando Vilariño |
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800 |
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Notes |
MV |
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no |
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Call Number |
Admin @ si @ Ber2012 |
Serial |
2211 |
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Permanent link to this record |
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Author |
Mirko Arnold; Anarta Ghosh; Stephen Ameling; G Lacey |
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Title |
Automatic segmentation and inpainting of specular highlights for endoscopic imaging |
Type |
Journal Article |
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Year |
2010 |
Publication |
EURASIP Journal on Image and Video Processing |
Abbreviated Journal |
EURASIP JIVP |
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Volume |
2010 |
Issue |
9 |
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800 |
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MV |
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no |
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Call Number |
fernando @ fernando @ |
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2423 |
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Author |
Mirko Arnold; Anarta Ghosh; Gerard Lacey; Stephen Patchett; Hugh Mulcahy |
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Title |
Indistinct frame detection in colonoscopy videos |
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Conference Article |
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Year |
2009 |
Publication |
Machine Vision and Image Processing Conference |
Abbreviated Journal |
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47-52 |
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800 |
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MV |
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no |
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Call Number |
fernando @ fernando @ |
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2424 |
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Permanent link to this record |
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Author |
Mirko Arnold; Stephan Ameling; Anarta Ghosh; Gerard Lacey |
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Title |
Quality Improvement of Endoscopy Videos |
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Conference Article |
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Year |
2011 |
Publication |
Proceedings of the 8th IASTED International Conference on Biomedical Engineering |
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723 |
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800 |
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MV |
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no |
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Call Number |
fernando @ fernando @ |
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2426 |
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Author |
Mirko Arnold; Anarta Ghosh; Glen Doherty; Hugh Mulcahy; Stephen Patchett; Gerard Lacey |
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Title |
Towards Automatic Direct Observation of Procedure and Skill (DOPS) in Colonoscopy |
Type |
Conference Article |
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Year |
2013 |
Publication |
Proceedings of the International Conference on Computer Vision Theory and Applications |
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Pages |
48-53 |
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800 |
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VISIGRAPP |
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MV |
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no |
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Call Number |
fernando @ fernando @ |
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2427 |
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Author |
Jorge Bernal |
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Title |
Use of Projection and Back-projection Methods in Bidimensional Computed Tomography Image Reconstruction |
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Report |
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Year |
2009 |
Publication |
CVC Tecnical Report |
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Volume |
141 |
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Keywords |
Projection, Back-projection, CT scan, Euclidean geometry, Radon transform |
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Abstract |
One of the biggest drawbacks related to the use of CT scanners is the cost (in memory and in time) associated. In this project many methods to simulate their functioning, but in a more feasible way (taking an industrial point of view), will be studied.
The main group of techniques that are being used are the one entitled as ’back-projection’. The concept behind is to simulate the X ray emission in CT scans by lines that cross with the image we want to reconstruct.
In the first part of this document euclidean geometry is used to face the tasks of projec- tion and back-projection. After analysing the results achieved it has been proved that this approach does not lead to a fully perfect reconstruction (and also has some other problems related to running time and memory cost). Because of this in the second part of the document ’Filtered Back-projection’ method is introduced in order to improve the results.
Filtered Back-projection methods rely on mathematical transforms (Fourier, Radon) in order to provide more accurate results that can be obtained in much less time. The main cause of this better results is the use of a filtering process before the back-projection in order to avoid high frequency-caused errors.
As a result of this project two different implementations (one for each approach) had been implemented in order to compare their performance. |
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Corporate Author |
Computer Vision Center |
Thesis |
Master's thesis |
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Place of Publication |
Barcelona, Spain |
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800 |
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Notes |
MV; |
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no |
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Call Number |
IAM @ iam @ Ber2009 |
Serial |
1693 |
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Permanent link to this record |
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Author |
Jorge Bernal; F. Javier Sanchez; Fernando Vilariño |
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Title |
Impact of Image Preprocessing Methods on Polyp Localization in Colonoscopy Frames |
Type |
Conference Article |
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Year |
2013 |
Publication |
35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society |
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7350 - 7354 |
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In this paper we present our image preprocessing methods as a key part of our automatic polyp localization scheme. These methods are used to assess the impact of different endoluminal scene elements when characterizing polyps. More precisely we tackle the influence of specular highlights, blood vessels and black mask surrounding the scene. Experimental results prove that the appropriate handling of these elements leads to a great improvement in polyp localization results. |
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Osaka; Japan; July 2013 |
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1557-170X |
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800 |
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EMBC |
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Notes |
MV; 600.047; 600.060;SIAI |
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no |
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Call Number |
Admin @ si @ BSV2013 |
Serial |
2286 |
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Permanent link to this record |
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Author |
Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño |
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Title |
Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization |
Type |
Conference Article |
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Year |
2013 |
Publication |
Proceedings of the International Conference on Computer Vision Theory and Applications |
Abbreviated Journal |
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Volume |
1 |
Issue |
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Pages |
162-171 |
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Keywords |
Colonoscopy; Blood vessel; Linear features; Valley detection |
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This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization
algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance. |
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Address |
Barcelona; February 2013 |
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SciTePress |
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800 |
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VISIGRAPP |
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Notes |
MV; 600.054; 600.057;SIAI |
Approved |
no |
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Call Number |
IAM @ iam @ NBS2013 |
Serial |
2198 |
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Permanent link to this record |
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Author |
Carles Sanchez; Jorge Bernal; Debora Gil; F. Javier Sanchez |
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Title |
On-line lumen centre detection in gastrointestinal and respiratory endoscopy |
Type |
Conference Article |
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Year |
2013 |
Publication |
Second International Workshop Clinical Image-Based Procedures |
Abbreviated Journal |
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Volume |
8361 |
Issue |
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Pages |
31-38 |
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Keywords |
Lumen centre detection; Bronchoscopy; Colonoscopy |
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Abstract |
We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %). |
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Address |
Nagoya; Japan; September 2013 |
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Thesis |
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Publisher |
Springer International Publishing |
Place of Publication |
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Editor |
Erdt, Marius and Linguraru, Marius George and Oyarzun Laura, Cristina and Shekhar, Raj and Wesarg, Stefan and González Ballester, Miguel Angel and Drechsler, Klaus |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
LNCS |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
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ISBN |
978-3-319-05665-4 |
Medium |
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Area |
800 |
Expedition |
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Conference |
CLIP |
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Notes |
MV; IAM; 600.047; 600.044; 600.060 |
Approved |
no |
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Call Number |
Admin @ si @ SBG2013 |
Serial |
2302 |
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Permanent link to this record |
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Author |
Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil |
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Title |
An illumination model of the trachea appearance in videobronchoscopy images |
Type |
Book Chapter |
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Year |
2012 |
Publication |
Image Analysis and Recognition |
Abbreviated Journal |
LNCS |
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Volume |
7325 |
Issue |
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Pages |
313-320 |
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Keywords |
Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation |
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Abstract |
Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution. |
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Address |
Aveiro, Portugal |
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Corporate Author |
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Thesis |
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Publisher |
Springer Berlin Heidelberg |
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Summary Language |
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Original Title |
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Series Editor |
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Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0302-9743 |
ISBN |
978-3-642-31297-7 |
Medium |
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Area |
800 |
Expedition |
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Conference |
ICIAR |
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Notes |
MV;IAM |
Approved |
no |
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Call Number |
IAM @ iam @ SSR2012 |
Serial |
1898 |
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Permanent link to this record |