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Mariella Dimiccoli, Benoît Girard, Alain Berthoz, & Daniel Bennequin. (2013). Striola Magica: a functional explanation of otolith organs. JCN - Journal of Computational Neuroscience, 35(2), 125–154.
Abstract: Otolith end organs of vertebrates sense linear accelerations of the head and gravitation. The hair cells on their epithelia are responsible for transduction. In mammals, the striola, parallel to the line where hair cells reverse their polarization, is a narrow region centered on a curve with curvature and torsion. It has been shown that the striolar region is functionally different from the rest, being involved in a phasic vestibular pathway. We propose a mathematical and computational model that explains the necessity of this amazing geometry for the striola to be able to carry out its function. Our hypothesis, related to the biophysics of the hair cells and to the physiology of their afferent neurons, is that striolar afferents collect information from several type I hair cells to detect the jerk in a large domain of acceleration directions. This predicts a mean number of two calyces for afferent neurons, as measured in rodents. The domain of acceleration directions sensed by our striolar model is compatible with the experimental results obtained on monkeys considering all afferents. Therefore, the main result of our study is that phasic and tonic vestibular afferents cover the same geometrical fields, but at different dynamical and frequency domains.
Keywords: Otolith organs ;Striola; Vestibular pathway
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Marina Alberti. (2013). Detection and Alignment of Vascular Structures in Intravascular Ultrasound using Pattern Recognition Techniques (Simone Balocco, & Petia Radeva, Eds.). Ph.D. thesis, Ediciones Graficas Rey, .
Abstract: In this thesis, several methods for the automatic analysis of Intravascular Ultrasound
(IVUS) sequences are presented, aimed at assisting physicians in the diagnosis, the assessment of the intervention and the monitoring of the patients with coronary disease.
The basis for the developed frameworks are machine learning, pattern recognition and
image processing techniques.
First, a novel approach for the automatic detection of vascular bifurcations in
IVUS is presented. The task is addressed as a binary classi cation problem (identifying bifurcation and non-bifurcation angular sectors in the sequence images). The
multiscale stacked sequential learning algorithm is applied, to take into account the
spatial and temporal context in IVUS sequences, and the results are re ned using
a-priori information about branching dimensions and geometry. The achieved performance is comparable to intra- and inter-observer variability.
Then, we propose a novel method for the automatic non-rigid alignment of IVUS
sequences of the same patient, acquired at dierent moments (before and after percutaneous coronary intervention, or at baseline and follow-up examinations). The
method is based on the description of the morphological content of the vessel, obtained by extracting temporal morphological pro les from the IVUS acquisitions, by
means of methods for segmentation, characterization and detection in IVUS. A technique for non-rigid sequence alignment – the Dynamic Time Warping algorithm -
is applied to the pro les and adapted to the speci c clinical problem. Two dierent robust strategies are proposed to address the partial overlapping between frames
of corresponding sequences, and a regularization term is introduced to compensate
for possible errors in the pro le extraction. The bene ts of the proposed strategy
are demonstrated by extensive validation on synthetic and in-vivo data. The results
show the interest of the proposed non-linear alignment and the clinical value of the
method.
Finally, a novel automatic approach for the extraction of the luminal border in
IVUS images is presented. The method applies the multiscale stacked sequential
learning algorithm and extends it to 2-D+T, in a rst classi cation phase (the identi-
cation of lumen and non-lumen regions of the images), while an active contour model
is used in a second phase, to identify the lumen contour. The method is extended
to the longitudinal dimension of the sequences and it is validated on a challenging
data-set.
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Marina Alberti, Simone Balocco, Xavier Carrillo, J. Mauri, & Petia Radeva. (2013). Automatic non-rigid temporal alignment of IVUS sequences: method and quantitative validation. UMB - Ultrasound in Medicine and Biology, 39(9), 1698–712.
Abstract: Clinical studies on atherosclerosis regression/progression performed by intravascular ultrasound analysis would benefit from accurate alignment of sequences of the same patient before and after clinical interventions and at follow-up. In this article, a methodology for automatic alignment of intravascular ultrasound sequences based on the dynamic time warping technique is proposed. The non-rigid alignment is adapted to the specific task by applying it to multidimensional signals describing the morphologic content of the vessel. Moreover, dynamic time warping is embedded into a framework comprising a strategy to address partial overlapping between acquisitions and a term that regularizes non-physiologic temporal compression/expansion of the sequences. Extensive validation is performed on both synthetic and in vivo data. The proposed method reaches alignment errors of approximately 0.43 mm for pairs of sequences acquired during the same intervention phase and 0.77 mm for pairs of sequences acquired at successive intervention stages.
Keywords: Intravascular ultrasound; Dynamic time warping; Non-rigid alignment; Sequence matching; Partial overlapping strategy
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Michal Drozdzal, Santiago Segui, Carolina Malagelada, Fernando Azpiroz, & Petia Radeva. (2013). Adaptable image cuts for motility inspection using WCE. CMIG - Computerized Medical Imaging and Graphics, 37(1), 72–80.
Abstract: The Wireless Capsule Endoscopy (WCE) technology allows the visualization of the whole small intestine tract. Since the capsule is freely moving, mainly by the means of peristalsis, the data acquired during the study gives a lot of information about the intestinal motility. However, due to: (1) huge amount of frames, (2) complex intestinal scene appearance and (3) intestinal dynamics that make difficult the visualization of the small intestine physiological phenomena, the analysis of the WCE data requires computer-aided systems to speed up the analysis. In this paper, we propose an efficient algorithm for building a novel representation of the WCE video data, optimal for motility analysis and inspection. The algorithm transforms the 3D video data into 2D longitudinal view by choosing the most informative, from the intestinal motility point of view, part of each frame. This step maximizes the lumen visibility in its longitudinal extension. The task of finding “the best longitudinal view” has been defined as a cost function optimization problem which global minimum is obtained by using Dynamic Programming. Validation on both synthetic data and WCE data shows that the adaptive longitudinal view is a good alternative to the traditional motility analysis done by video analysis. The proposed novel data representation a new, holistic insight into the small intestine motility, allowing to easily define and analyze motility events that are difficult to spot by analyzing WCE video. Moreover, the visual inspection of small intestine motility is 4 times faster then by means of video skimming of the WCE.
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Michal Drozdzal, Santiago Segui, Petia Radeva, Carolina Malagelada, Fernando Azpiroz, & Jordi Vitria. (2013). An Application for Efficient Error-Free Labeling of Medical Images. In Multimodal Interaction in Image and Video Applications (Vol. 48, pp. 1–16). Springer Berlin Heidelberg.
Abstract: In this chapter we describe an application for efficient error-free labeling of medical images. In this scenario, the compilation of a complete training set for building a realistic model of a given class of samples is not an easy task, making the process tedious and time consuming. For this reason, there is a need for interactive labeling applications that minimize the effort of the user while providing error-free labeling. We propose a new algorithm that is based on data similarity in feature space. This method actively explores data in order to find the best label-aligned clustering and exploits it to reduce the labeler effort, that is measured by the number of “clicks. Moreover, error-free labeling is guaranteed by the fact that all data and their labels proposals are visually revised by en expert.
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Miguel Reyes, Albert Clapes, Jose Ramirez, Juan R Revilla, & Sergio Escalera. (2013). Automatic Digital Biometry Analysis based on Depth Maps. COMPUTIND - Computers in Industry, 64(9), 1316–1325.
Abstract: World Health Organization estimates that 80% of the world population is affected by back-related disorders during his life. Current practices to analyze musculo-skeletal disorders (MSDs) are expensive, subjective, and invasive. In this work, we propose a tool for static body posture analysis and dynamic range of movement estimation of the skeleton joints based on 3D anthropometric information from multi-modal data. Given a set of keypoints, RGB and depth data are aligned, depth surface is reconstructed, keypoints are matched, and accurate measurements about posture and spinal curvature are computed. Given a set of joints, range of movement measurements is also obtained. Moreover, gesture recognition based on joint movements is performed to look for the correctness in the development of physical exercises. The system shows high precision and reliable measurements, being useful for posture reeducation purposes to prevent MSDs, as well as tracking the posture evolution of patients in rehabilitation treatments.
Keywords: Multi-modal data fusion; Depth maps; Posture analysis; Anthropometric data; Musculo-skeletal disorders; Gesture analysis
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Mikhail Mozerov. (2013). Constrained Optical Flow Estimation as a Matching Problem. TIP - IEEE Transactions on Image Processing, 22(5), 2044–2055.
Abstract: In general, discretization in the motion vector domain yields an intractable number of labels. In this paper we propose an approach that can reduce general optical flow to the constrained matching problem by pre-estimating a 2D disparity labeling map of the desired discrete motion vector function. One of the goals of the proposed paper is estimating coarse distribution of motion vectors and then utilizing this distribution as global constraints for discrete optical flow estimation. This pre-estimation is done with a simple frame-to-frame correlation technique also known as the digital symmetric-phase-only-filter (SPOF). We discover a strong correlation between the output of the SPOF and the motion vector distribution of the related optical flow. The two step matching paradigm for optical flow estimation is applied: pixel accuracy (integer flow), and subpixel accuracy estimation. The matching problem is solved by global optimization. Experiments on the Middlebury optical flow datasets confirm our intuitive assumptions about strong correlation between motion vector distribution of optical flow and maximal peaks of SPOF outputs. The overall performance of the proposed method is promising and achieves state-of-the-art results on the Middlebury benchmark.
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Miquel Ferrer, I. Bardaji, Ernest Valveny, Dimosthenis Karatzas, & Horst Bunke. (2013). Median Graph Computation by Means of Graph Embedding into Vector Spaces. In Yun Fu, & Yungian Ma (Eds.), Graph Embedding for Pattern Analysis (pp. 45–72). Springer New York.
Abstract: In pattern recognition [8, 14], a key issue to be addressed when designing a system is how to represent input patterns. Feature vectors is a common option. That is, a set of numerical features describing relevant properties of the pattern are computed and arranged in a vector form. The main advantages of this kind of representation are computational simplicity and a well sound mathematical foundation. Thus, a large number of operations are available to work with vectors and a large repository of algorithms for pattern analysis and classification exist. However, the simple structure of feature vectors might not be the best option for complex patterns where nonnumerical features or relations between different parts of the pattern become relevant.
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Mirko Arnold, Anarta Ghosh, Glen Doherty, Hugh Mulcahy, Stephen Patchett, & Gerard Lacey. (2013). Towards Automatic Direct Observation of Procedure and Skill (DOPS) in Colonoscopy. In Proceedings of the International Conference on Computer Vision Theory and Applications (pp. 48–53).
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Mohammad Ali Bagheri, Qigang Gao, & Sergio Escalera. (2013). Logo recognition Based on the Dempster-Shafer Fusion of Multiple Classifiers. In 26th Canadian Conference on Artificial Intelligence (Vol. 7884, pp. 1–12). Springer Berlin Heidelberg.
Abstract: Best paper award
The performance of different feature extraction and shape description methods in trademark image recognition systems have been studied by several researchers. However, the potential improvement in classification through feature fusion by ensemble-based methods has remained unattended. In this work, we evaluate the performance of an ensemble of three classifiers, each trained on different feature sets. Three promising shape description techniques, including Zernike moments, generic Fourier descriptors, and shape signature are used to extract informative features from logo images, and each set of features is fed into an individual classifier. In order to reduce recognition error, a powerful combination strategy based on the Dempster-Shafer theory is utilized to fuse the three classifiers trained on different sources of information. This combination strategy can effectively make use of diversity of base learners generated with different set of features. The recognition results of the individual classifiers are compared with those obtained from fusing the classifiers’ output, showing significant performance improvements of the proposed methodology.
Keywords: Logo recognition; ensemble classification; Dempster-Shafer fusion; Zernike moments; generic Fourier descriptor; shape signature
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Mohammad Ali Bagheri, Qigang Gao, & Sergio Escalera. (2013). A Genetic-based Subspace Analysis Method for Improving Error-Correcting Output Coding. PR - Pattern Recognition, 46(10), 2830–2839.
Abstract: Two key factors affecting the performance of Error Correcting Output Codes (ECOC) in multiclass classification problems are the independence of binary classifiers and the problem-dependent coding design. In this paper, we propose an evolutionary algorithm-based approach to the design of an application-dependent codematrix in the ECOC framework. The central idea of this work is to design a three-dimensional codematrix, where the third dimension is the feature space of the problem domain. In order to do that, we consider the feature space in the design process of the codematrix with the aim of improving the independence and accuracy of binary classifiers. The proposed method takes advantage of some basic concepts of ensemble classification, such as diversity of classifiers, and also benefits from the evolutionary approach for optimizing the three-dimensional codematrix, taking into account the problem domain. We provide a set of experimental results using a set of benchmark datasets from the UCI Machine Learning Repository, as well as two real multiclass Computer Vision problems. Both sets of experiments are conducted using two different base learners: Neural Networks and Decision Trees. The results show that the proposed method increases the classification accuracy in comparison with the state-of-the-art ECOC coding techniques.
Keywords: Error Correcting Output Codes; Evolutionary computation; Multiclass classification; Feature subspace; Ensemble classification
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Mohammad Rouhani, & Angel Sappa. (2013). The Richer Representation the Better Registration. TIP - IEEE Transactions on Image Processing, 22(12), 5036–5049.
Abstract: In this paper, the registration problem is formulated as a point to model distance minimization. Unlike most of the existing works, which are based on minimizing a point-wise correspondence term, this formulation avoids the correspondence search that is time-consuming. In the first stage, the target set is described through an implicit function by employing a linear least squares fitting. This function can be either an implicit polynomial or an implicit B-spline from a coarse to fine representation. In the second stage, we show how the obtained implicit representation is used as an interface to convert point-to-point registration into point-to-implicit problem. Furthermore, we show that this registration distance is smooth and can be minimized through the Levengberg-Marquardt algorithm. All the formulations presented for both stages are compact and easy to implement. In addition, we show that our registration method can be handled using any implicit representation though some are coarse and others provide finer representations; hence, a tradeoff between speed and accuracy can be set by employing the right implicit function. Experimental results and comparisons in 2D and 3D show the robustness and the speed of convergence of the proposed approach.
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Muhammad Anwer Rao. (2013). Color for Object Detection and Action Recognition (Antonio Lopez, & Joost Van de Weijer, Eds.). Ph.D. thesis, Ediciones Graficas Rey, .
Abstract: Recognizing object categories in real world images is a challenging problem in computer vision. The deformable part based framework is currently the most successful approach for object detection. Generally, HOG are used for image representation within the part-based framework. For action recognition, the bag-of-word framework has shown to provide promising results. Within the bag-of-words framework, local image patches are described by SIFT descriptor. Contrary to object detection and action recognition, combining color and shape has shown to provide the best performance for object and scene recognition.
In the first part of this thesis, we analyze the problem of person detection in still images. Standard person detection approaches rely on intensity based features for image representation while ignoring the color. Channel based descriptors is one of the most commonly used approaches in object recognition. This inspires us to evaluate incorporating color information using the channel based fusion approach for the task of person detection.
In the second part of the thesis, we investigate the problem of object detection in still images. Due to high dimensionality, channel based fusion increases the computational cost. Moreover, channel based fusion has been found to obtain inferior results for object category where one of the visual varies significantly. On the other hand, late fusion is known to provide improved results for a wide range of object categories. A consequence of late fusion strategy is the need of a pure color descriptor. Therefore, we propose to use Color attributes as an explicit color representation for object detection. Color attributes are compact and computationally efficient. Consequently color attributes are combined with traditional shape features providing excellent results for object detection task.
Finally, we focus on the problem of action detection and classification in still images. We investigate the potential of color for action classification and detection in still images. We also evaluate different fusion approaches for combining color and shape information for action recognition. Additionally, an analysis is performed to validate the contribution of color for action recognition. Our results clearly demonstrate that combining color and shape information significantly improve the performance of both action classification and detection in still images.
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Muhammad Muzzamil Luqman, Jean-Yves Ramel, & Josep Llados. (2013). Multilevel Analysis of Attributed Graphs for Explicit Graph Embedding in Vector Spaces. In Graph Embedding for Pattern Analysis (pp. 1–26). Springer New York.
Abstract: Ability to recognize patterns is among the most crucial capabilities of human beings for their survival, which enables them to employ their sophisticated neural and cognitive systems [1], for processing complex audio, visual, smell, touch, and taste signals. Man is the most complex and the best existing system of pattern recognition. Without any explicit thinking, we continuously compare, classify, and identify huge amount of signal data everyday [2], starting from the time we get up in the morning till the last second we fall asleep. This includes recognizing the face of a friend in a crowd, a spoken word embedded in noise, the proper key to lock the door, smell of coffee, the voice of a favorite singer, the recognition of alphabetic characters, and millions of more tasks that we perform on regular basis.
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Muhammad Muzzamil Luqman, Jean-Yves Ramel, Josep Llados, & Thierry Brouard. (2013). Fuzzy Multilevel Graph Embedding. PR - Pattern Recognition, 46(2), 551–565.
Abstract: Structural pattern recognition approaches offer the most expressive, convenient, powerful but computational expensive representations of underlying relational information. To benefit from mature, less expensive and efficient state-of-the-art machine learning models of statistical pattern recognition they must be mapped to a low-dimensional vector space. Our method of explicit graph embedding bridges the gap between structural and statistical pattern recognition. We extract the topological, structural and attribute information from a graph and encode numeric details by fuzzy histograms and symbolic details by crisp histograms. The histograms are concatenated to achieve a simple and straightforward embedding of graph into a low-dimensional numeric feature vector. Experimentation on standard public graph datasets shows that our method outperforms the state-of-the-art methods of graph embedding for richly attributed graphs.
Keywords: Pattern recognition; Graphics recognition; Graph clustering; Graph classification; Explicit graph embedding; Fuzzy logic
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