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Author Meysam Madadi; Hugo Bertiche; Sergio Escalera edit   pdf
doi  openurl
  Title Deep unsupervised 3D human body reconstruction from a sparse set of landmarks Type Journal Article
  Year 2021 Publication International Journal of Computer Vision Abbreviated Journal IJCV  
  Volume 129 Issue Pages 2499–2512  
  Keywords  
  Abstract In this paper we propose the first deep unsupervised approach in human body reconstruction to estimate body surface from a sparse set of landmarks, so called DeepMurf. We apply a denoising autoencoder to estimate missing landmarks. Then we apply an attention model to estimate body joints from landmarks. Finally, a cascading network is applied to regress parameters of a statistical generative model that reconstructs body. Our set of proposed loss functions allows us to train the network in an unsupervised way. Results on four public datasets show that our approach accurately reconstructs the human body from real world mocap data.  
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  Notes HUPBA; no proj Approved no  
  Call Number Admin @ si @ MBE2021 Serial (down) 3654  
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Author Victor M. Campello; Polyxeni Gkontra; Cristian Izquierdo; Carlos Martin-Isla; Alireza Sojoudi; Peter M. Full; Klaus Maier-Hein; Yao Zhang; Zhiqiang He; Jun Ma; Mario Parreno; Alberto Albiol; Fanwei Kong; Shawn C. Shadden; Jorge Corral Acero; Vaanathi Sundaresan; Mina Saber; Mustafa Elattar; Hongwei Li; Bjoern Menze; Firas Khader; Christoph Haarburger; Cian M. Scannell; Mitko Veta; Adam Carscadden; Kumaradevan Punithakumar; Xiao Liu; Sotirios A. Tsaftaris; Xiaoqiong Huang; Xin Yang; Lei Li; Xiahai Zhuang; David Vilades; Martin L. Descalzo; Andrea Guala; Lucia La Mura; Matthias G. Friedrich; Ria Garg; Julie Lebel; Filipe Henriques; Mahir Karakas; Ersin Cavus; Steffen E. Petersen; Sergio Escalera; Santiago Segui; Jose F. Rodriguez Palomares; Karim Lekadir edit  url
doi  openurl
  Title Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge Type Journal Article
  Year 2021 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI  
  Volume 40 Issue 12 Pages 3543-3554  
  Keywords  
  Abstract The emergence of deep learning has considerably advanced the state-of-the-art in cardiac magnetic resonance (CMR) segmentation. Many techniques have been proposed over the last few years, bringing the accuracy of automated segmentation close to human performance. However, these models have been all too often trained and validated using cardiac imaging samples from single clinical centres or homogeneous imaging protocols. This has prevented the development and validation of models that are generalizable across different clinical centres, imaging conditions or scanner vendors. To promote further research and scientific benchmarking in the field of generalizable deep learning for cardiac segmentation, this paper presents the results of the Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation (M&Ms) Challenge, which was recently organized as part of the MICCAI 2020 Conference. A total of 14 teams submitted different solutions to the problem, combining various baseline models, data augmentation strategies, and domain adaptation techniques. The obtained results indicate the importance of intensity-driven data augmentation, as well as the need for further research to improve generalizability towards unseen scanner vendors or new imaging protocols. Furthermore, we present a new resource of 375 heterogeneous CMR datasets acquired by using four different scanner vendors in six hospitals and three different countries (Spain, Canada and Germany), which we provide as open-access for the community to enable future research in the field.  
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  Notes HUPBA; no proj Approved no  
  Call Number Admin @ si @ CGI2021 Serial (down) 3653  
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Author Meysam Madadi; Sergio Escalera; Xavier Baro; Jordi Gonzalez edit   pdf
doi  openurl
  Title End-to-end Global to Local CNN Learning for Hand Pose Recovery in Depth data Type Journal Article
  Year 2022 Publication IET Computer Vision Abbreviated Journal IETCV  
  Volume 16 Issue 1 Pages 50-66  
  Keywords Computer vision; data acquisition; human computer interaction; learning (artificial intelligence); pose estimation  
  Abstract Despite recent advances in 3D pose estimation of human hands, especially thanks to the advent of CNNs and depth cameras, this task is still far from being solved. This is mainly due to the highly non-linear dynamics of fingers, which make hand model training a challenging task. In this paper, we exploit a novel hierarchical tree-like structured CNN, in which branches are trained to become specialized in predefined subsets of hand joints, called local poses. We further fuse local pose features, extracted from hierarchical CNN branches, to learn higher order dependencies among joints in the final pose by end-to-end training. Lastly, the loss function used is also defined to incorporate appearance and physical constraints about doable hand motion and deformation. Finally, we introduce a non-rigid data augmentation approach to increase the amount of training depth data. Experimental results suggest that feeding a tree-shaped CNN, specialized in local poses, into a fusion network for modeling joints correlations and dependencies, helps to increase the precision of final estimations, outperforming state-of-the-art results on NYU and SyntheticHand datasets.  
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  Notes HUPBA; ISE; 600.098; 600.119 Approved no  
  Call Number Admin @ si @ MEB2022 Serial (down) 3652  
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Author Javier Marin; Sergio Escalera edit   pdf
url  openurl
  Title SSSGAN: Satellite Style and Structure Generative Adversarial Networks Type Journal Article
  Year 2021 Publication Remote Sensing Abbreviated Journal  
  Volume 13 Issue 19 Pages 3984  
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  Abstract This work presents Satellite Style and Structure Generative Adversarial Network (SSGAN), a generative model of high resolution satellite imagery to support image segmentation. Based on spatially adaptive denormalization modules (SPADE) that modulate the activations with respect to segmentation map structure, in addition to global descriptor vectors that capture the semantic information in a vector with respect to Open Street Maps (OSM) classes, this model is able to produce
consistent aerial imagery. By decoupling the generation of aerial images into a structure map and a carefully defined style vector, we were able to improve the realism and geodiversity of the synthesis with respect to the state-of-the-art baseline. Therefore, the proposed model allows us to control the generation not only with respect to the desired structure, but also with respect to a geographic area.
 
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  Notes HUPBA; no proj Approved no  
  Call Number Admin @ si @ MaE2021 Serial (down) 3651  
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Author Clementine Decamps; Alexis Arnaud; Florent Petitprez; Mira Ayadi; Aurelia Baures; Lucile Armenoult; Sergio Escalera; Isabelle Guyon; Remy Nicolle; Richard Tomasini; Aurelien de Reynies; Jerome Cros; Yuna Blum; Magali Richard edit   pdf
url  openurl
  Title DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification Type Journal Article
  Year 2021 Publication BMC Bioinformatics Abbreviated Journal  
  Volume 22 Issue Pages 473  
  Keywords  
  Abstract Quantification of tumor heterogeneity is essential to better understand cancer progression and to adapt therapeutic treatments to patient specificities. Bioinformatic tools to assess the different cell populations from single-omic datasets as bulk transcriptome or methylome samples have been recently developed, including reference-based and reference-free methods. Improved methods using multi-omic datasets are yet to be developed in the future and the community would need systematic tools to perform a comparative evaluation of these algorithms on controlled data.  
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  Notes HUPBA; no proj Approved no  
  Call Number Admin @ si @ DAP2021 Serial (down) 3650  
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