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Author |
Debora Gil; Agnes Borras; Manuel Ballester; Francesc Carreras; Ruth Aris; Manuel Vazquez; Enric Marti; Ferran Poveda |
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Title |
MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis |
Type |
Conference Article |
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Year |
2011 |
Publication |
14th International Symposium on Applied Sciences in Biomedical and Communication Technologies |
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Abstract |
Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization. |
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Address |
Barcelona; Spain |
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Corporate Author |
Association for Computing Machinery |
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Place of Publication |
Barcelona, Spain |
Editor |
Association for Computing Machinery |
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Language |
english |
Summary Language |
english |
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978-1-4503-0913-4 |
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ISABEL |
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IAM |
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Call Number |
IAM @ iam @ GGB2011 |
Serial |
1691 |
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Author |
David Roche; Debora Gil; Jesus Giraldo |
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Title |
Assessing agonist efficacy in an uncertain Em world |
Type |
Conference Article |
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Year |
2012 |
Publication |
40th Keystone Symposia on mollecular and celular biology |
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Pages |
79 |
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Abstract |
The operational model of agonism has been widely used for the analysis of agonist action since its formulation in 1983. The model includes the Em parameter, which is defined as the maximum response of the system. The methods for Em estimation provide Em values not significantly higher than the maximum responses achieved by full agonists. However, it has been found that that some classes of compounds as, for instance, superagonists and positive allosteric modulators can increase the full agonist maximum response, implying upper limits for Em and thereby posing doubts on the validity of Em estimates. Because of the correlation between Em and operational efficacy, τ, wrong Em estimates will yield wrong τ estimates.
In this presentation, the operational model of agonism and various methods for the simulation of allosteric modulation will be analyzed. Alternatives for curve fitting will be presented and discussed. |
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Address |
Fairmont Banff Springs, Banff, Alberta, Canada |
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Corporate Author |
Keystone Symposia |
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Publisher |
Keystone Symposia |
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Editor |
A. Christopoulus and M. Bouvier |
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Language |
english |
Summary Language |
english |
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Keystone Symposia |
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KSMCB |
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IAM |
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no |
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Call Number |
IAM @ iam @ RGG2012 |
Serial |
1855 |
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Author |
Patricia Marquez; Debora Gil ; Aura Hernandez-Sabate |
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Title |
Error Analysis for Lucas-Kanade Based Schemes |
Type |
Conference Article |
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Year |
2012 |
Publication |
9th International Conference on Image Analysis and Recognition |
Abbreviated Journal |
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Volume |
7324 |
Issue |
I |
Pages |
184-191 |
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Keywords |
Optical flow, Confidence measure, Lucas-Kanade, Cardiac Magnetic Resonance |
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Abstract |
Optical flow is a valuable tool for motion analysis in medical imaging sequences. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in medical sequences. This paper presents an error analysis of Lucas-Kanade schemes in terms of intrinsic design errors and numerical stability of the algorithm. Our analysis provides a confidence measure that is naturally correlated to the accuracy of the flow field. Our experiments show the higher predictive value of our confidence measure compared to existing measures. |
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Address |
Aveiro, Portugal |
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Springer-Verlag Berlin Heidelberg |
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english |
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Series Editor |
Campilho, Aurélio and Kamel, Mohamed |
Series Title |
Lecture Notes in Computer Science |
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LNCS |
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Edition |
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ISSN |
0302-9743 |
ISBN |
978-3-642-31294-6 |
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ICIAR |
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IAM |
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Call Number |
IAM @ iam @ MGH2012a |
Serial |
1899 |
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Author |
Albert Andaluz; Francesc Carreras; Cristina Santa Marta;Debora Gil |
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Title |
Myocardial torsion estimation with Tagged-MRI in the OsiriX platform |
Type |
Conference Article |
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Year |
2012 |
Publication |
ISBI Workshop on Open Source Medical Image Analysis software |
Abbreviated Journal |
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Abstract |
Myocardial torsion (MT) plays a crucial role in the assessment of the functionality of the
left ventricle. For this purpose, the IAM group at the CVC has developed the Harmonic Phase Flow (HPF) plugin for the Osirix DICOM platform . We have validated its funcionalty on sequences acquired using different protocols and including healthy and pathological cases. Results show similar torsion trends for SPAMM acquisitions, with pathological cases introducing expected deviations from the ground truth. Finally, we provide the plugin free of charge at http://iam.cvc.uab.es |
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Address |
Barcelona, Spain |
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Publisher |
IEEE |
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Editor |
Wiro Niessen (Erasmus MC) and Marc Modat (UCL) |
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ISBI |
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IAM |
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Call Number |
IAM @ iam @ ACS2012 |
Serial |
1900 |
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Author |
A. M. Here; B. C. Lopez; Debora Gil; J. J. Camarero; Jordi Martinez-Vilalta |
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Title |
A new software to analyse wood anatomical features in conifer species |
Type |
Conference Article |
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Year |
2013 |
Publication |
International Symposium on Wood Structure in Plant Biology and Ecology |
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Abstract |
International Symposium on Wood Structure in Plant Biology and Ecology |
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Address |
Naples; Italy; March 2013 |
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WSE |
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IAM |
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no |
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Call Number |
Admin @ si @ HLG2013 |
Serial |
2303 |
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Author |
Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil |
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Title |
Volumetric Anatomical Parameterization and Meshing for Inter-patient Liver Coordinate System Deffinition |
Type |
Conference Article |
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Year |
2013 |
Publication |
16th International Conference on Medical Image Computing and Computer Assisted Intervention |
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Address |
Nagoya; Japan; September 2013 |
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MICCAI |
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IAM |
Approved |
no |
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Call Number |
Admin @ si @ VGG2013 |
Serial |
2301 |
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Author |
Ferran Poveda; Debora Gil;Enric Marti |
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Title |
Multi-resolution DT-MRI cardiac tractography |
Type |
Conference Article |
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Year |
2012 |
Publication |
Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges |
Abbreviated Journal |
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Volume |
7746 |
Issue |
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Pages |
270-277 |
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Abstract |
Even using objective measures from DT-MRI no consensus about myocardial architecture has been achieved so far. Streamlining provides good reconstructions at low level of detail, but falls short to give global abstract interpretations. In this paper, we present a multi-resolution methodology that is able to produce simplified representations of cardiac architecture. Our approach produces a reduced set of tracts that are representative of the main geometric features of myocardial anatomical structure. Experiments show that fiber geometry is preserved along reductions, which validates the simplified model for interpretation of cardiac architecture. |
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Address |
Nice, France |
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Publisher |
Springer Berlin Heidelberg |
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LNCS |
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Series Volume |
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ISSN |
0302-9743 |
ISBN |
978-3-642-36960-5 |
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Conference |
STACOM |
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Notes |
IAM |
Approved |
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Call Number |
IAM @ iam @ PGM2012 |
Serial |
1986 |
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Author |
Debora Gil;Agnes Borras;Ruth Aris;Mariano Vazquez;Pierre Lafortune; Guillame Houzeaux |
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Title |
What a difference in biomechanics cardiac fiber makes |
Type |
Conference Article |
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Year |
2012 |
Publication |
Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges |
Abbreviated Journal |
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Volume |
7746 |
Issue |
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Pages |
253-260 |
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Abstract |
Computational simulations of the heart are a powerful tool for a comprehensive understanding of cardiac function and its intrinsic relationship with its muscular architecture. Cardiac biomechanical models require a vector field representing the orientation of cardiac fibers. A wrong orientation of the fibers can lead to a
non-realistic simulation of the heart functionality. In this paper we explore the impact of the fiber information on the simulated biomechanics of cardiac muscular anatomy. We have used the John Hopkins database to perform a biomechanical simulation using both a synthetic benchmark fiber distribution and the data obtained experimentally from DTI. Results illustrate how differences in fiber orientation affect heart deformation along cardiac cycle. |
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Address |
Nice, France |
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Publisher |
Springer Berlin Heidelberg |
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ISSN |
0302-9743 |
ISBN |
978-3-642-36960-5 |
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STACOM |
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IAM |
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Call Number |
IAM @ iam @ GBA2012 |
Serial |
1987 |
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Author |
Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil |
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Title |
A medial map capturing the essential geometry of organs |
Type |
Conference Article |
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Year |
2012 |
Publication |
ISBI Workshop on Open Source Medical Image Analysis software |
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Pages |
1691 - 1694 |
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Keywords |
Medial Surface Representation, Volume Reconstruction,Geometry , Image reconstruction , Liver , Manifolds , Shape , Surface morphology , Surface reconstruction |
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Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Accurate computation of one pixel wide medial surfaces is mandatory. Those surfaces must represent faithfully the geometry of the volume. Although morphological methods produce excellent results in 2D, their complexity and quality drops across dimensions, due to a more complex description of pixel neighborhoods. This paper introduces a continuous operator for accurate and efficient computation of medial structures of arbitrary dimension. Our experiments show its higher performance for medical imaging applications in terms of simplicity of medial structures and capability for reconstructing the anatomical volume |
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Address |
Barcelona,Spain |
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Corporate Author |
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Thesis |
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Publisher |
IEEE |
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ISSN |
1945-7928 |
ISBN |
978-1-4577-1857-1 |
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ISBI |
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IAM |
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Call Number |
IAM @ iam @ VGG2012a |
Serial |
1989 |
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Author |
Guillermo Torres; Jan Rodríguez Dueñas; Sonia Baeza; Antoni Rosell; Carles Sanchez; Debora Gil |
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Title |
Prediction of Malignancy in Lung Cancer using several strategies for the fusion of Multi-Channel Pyradiomics Images |
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Conference Article |
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Year |
2023 |
Publication |
7th Workshop on Digital Image Processing for Medical and Automotive Industry in the framework of SYNASC 2023 |
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This study shows the generation process and the subsequent study of the representation space obtained by extracting GLCM texture features from computer-aided tomography (CT) scans of pulmonary nodules (PN). For this, data from 92 patients from the Germans Trias i Pujol University Hospital were used. The workflow focuses on feature extraction using Pyradiomics and the VGG16 Convolutional Neural Network (CNN). The aim of the study is to assess whether the data obtained have a positive impact on the diagnosis of lung cancer (LC). To design a machine learning (ML) model training method that allows generalization, we train SVM and neural network (NN) models, evaluating diagnosis performance using metrics defined at slice and nodule level. |
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DIPMAI |
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Admin @ si @ TRB2023 |
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3926 |
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