| |
Records |
Links |
|
Author |
Sergio Vera; Debora Gil; Agnes Borras; F. Javier Sanchez; Frederic Perez; Marius G. Linguraru; Miguel Angel Gonzalez Ballester |
|
| |
Title |
Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs |
Type |
Book Chapter |
| |
Year |
2012 |
Publication |
Workshop on Computational and Clinical Applications in Abdominal Imaging |
Abbreviated Journal |
|
|
| |
Volume |
7029 |
Issue |
|
Pages |
223–230 |
|
| |
Keywords |
medial manifolds, abdomen. |
|
| |
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D
objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial
manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our
method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs,
exploring the use of medial manifolds for the representation of multi-organ relations. |
|
| |
Address |
Toronto; Canada; |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Link |
Place of Publication |
Berlin |
Editor |
H. Yoshida et al |
|
| |
Language |
English |
Summary Language |
English |
Original Title |
|
|
| |
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-28556-1 |
Medium |
|
|
| |
Area  |
|
Expedition |
|
Conference |
ABDI |
|
| |
Notes |
IAM;MV |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ VGB2012 |
Serial |
1834 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil |
|
| |
Title |
Optimal Medial Surface Generation for Anatomical Volume Representations |
Type |
Book Chapter |
| |
Year |
2012 |
Publication |
Abdominal Imaging. Computational and Clinical Applications |
Abbreviated Journal |
LNCS |
|
| |
Volume |
7601 |
Issue |
|
Pages |
265-273 |
|
| |
Keywords |
Medial surface representation; volume reconstruction |
|
| |
Abstract |
Medial representations are a widely used technique in abdominal organ shape representation and parametrization. Those methods require good medial manifolds as a starting point. Any medial
surface used to parametrize a volume should be simple enough to allow an easy manipulation and complete enough to allow an accurate reconstruction of the volume. Obtaining good quality medial
surfaces is still a problem with current iterative thinning methods. This forces the usage of generic, pre-calculated medial templates that are adapted to the final shape at the cost of a drop in volume reconstruction.
This paper describes an operator for generation of medial structures that generates clean and complete manifolds well suited for their further use in medial representations of abdominal organ volumes. While being simpler than thinning surfaces, experiments show its high performance in volume reconstruction and preservation of medial surface main branching topology. |
|
| |
Address |
Nice, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
Yoshida, Hiroyuki and Hawkes, David and Vannier, MichaelW. |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-33611-9 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
STACOM |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ VGG2012b |
Serial |
1988 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera |
|
| |
Title |
Anatomic Registration based on Medial Axis Parametrizations |
Type |
Book Whole |
| |
Year |
2015 |
Publication |
PhD Thesis, Universitat Autonoma de Barcelona-CVC |
Abbreviated Journal |
|
|
| |
Volume |
|
Issue |
|
Pages |
|
|
| |
Keywords |
|
|
| |
Abstract |
Image registration has been for many years the gold standard method to bring two images into correspondence. It has been used extensively in the eld of medical imaging in order to put images of di erent patients into a common overlapping spatial position. However, medical image registration is a slow, iterative optimization process, where many variables and prone to fall into the pit traps local minima.
A coordinate system parameterizing the interior of organs is a powerful tool for a systematic localization of injured tissue. If the same coordinate values are assigned to speci c anatomical sites, parameterizations ensure integration of data across different medical image modalities. Harmonic mappings have been used to produce parametric meshes over the surface of anatomical shapes, given their ability to set values at speci c locations through boundary conditions. However, most of the existing implementations in medical imaging restrict to either anatomical surfaces, or the depth coordinate with boundary conditions is given at discrete sites of limited geometric diversity.
The medial surface of the shape can be used to provide a continuous basis for the de nition of a depth coordinate. However, given that di erent methods for generation of medial surfaces generate di erent manifolds, not all of them are equally suited to be the basis of radial coordinate for a parameterization. It would be desirable that the medial surface will be smooth, and robust to surface shape noise, with low number of spurious branches or surfaces.
In this thesis we present methods for computation of smooth medial manifolds and apply them to the generation of for anatomical volumetric parameterization that extends current harmonic parameterizations to the interior anatomy using information provided by the volume medial surface. This reference system sets a solid base for creating anatomical models of the anatomical shapes, and allows comparing several patients in a common framework of reference. |
|
| |
Address |
November 2015 |
|
| |
Corporate Author |
|
Thesis |
Ph.D. thesis |
|
| |
Publisher |
Ediciones Graficas Rey |
Place of Publication |
|
Editor |
Debora Gil;Miguel Angel Gonzalez Ballester |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
978-84-943427-8-3 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
IAM; 600.075 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ Ver2015 |
Serial |
2708 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
H. Martin Kjer; Jens Fagertun; Sergio Vera; Debora Gil |
|
| |
Title |
Medial structure generation for registration of anatomical structures |
Type |
Book Chapter |
| |
Year |
2017 |
Publication |
Skeletonization, Theory, Methods and Applications |
Abbreviated Journal |
|
|
| |
Volume |
11 |
Issue |
|
Pages |
|
|
| |
Keywords |
|
|
| |
Abstract |
|
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
IAM; 600.096; 600.075; 600.145 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ MFV2017a |
Serial |
2935 |
|
| Permanent link to this record |
