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Author |
Agnes Borras; Josep Llados |
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Title  |
A Multi-Scale Layout Descriptor Based on Delaunay Triangulation for Image Retrieval |
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Conference Article |
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2008 |
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3rd International Conference on Computer Vision Theory and Applications VISAPP (2) 2008 |
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2 |
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139-144 |
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Funchal, Madeira (Portugal) |
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DAG @ dag @ BoL2008 |
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981 |
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Author |
Debora Gil; Agnes Borras; Sergio Vera; Miguel Angel Gonzalez Ballester |
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Title |
A Validation Benchmark for Assessment of Medial Surface Quality for Medical Applications |
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Conference Article |
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Year |
2013 |
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9th International Conference on Computer Vision Systems |
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7963 |
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334-343 |
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Medial Surfaces; Shape Representation; Medical Applications; Performance Evaluation |
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Confident use of medial surfaces in medical decision support systems requires evaluating their quality for detecting pathological deformations and describing anatomical volumes. Validation in the medical imaging field is a challenging task mainly due to the difficulties for getting consensual ground truth. In this paper we propose a validation benchmark for assessing medial surfaces in the context of medical applications. Our benchmark includes a home-made database of synthetic medial surfaces and volumes and specific scores for evaluating surface accuracy, its stability against volume deformations and its capabilities for accurate reconstruction of anatomical volumes. |
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Sant Petersburg; Russia; July 2013 |
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Springer Berlin Heidelberg |
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0302-9743 |
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978-3-642-39401-0 |
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ICVS |
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IAM; 600.044; 600.060 |
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Admin @ si @ GBV2013 |
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2300 |
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Author |
Debora Gil; Sergio Vera; Agnes Borras; Albert Andaluz; Miguel Angel Gonzalez Ballester |
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Title |
Anatomical Medial Surfaces with Efficient Resolution of Branches Singularities |
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Journal Article |
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2017 |
Publication |
Medical Image Analysis |
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MIA |
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35 |
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390-402 |
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Medial Representations; Shape Recognition; Medial Branching Stability ; Singular Points |
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Medial surfaces are powerful tools for shape description, but their use has been limited due to the sensibility existing methods to branching artifacts. Medial branching artifacts are associated to perturbations of the object boundary rather than to geometric features. Such instability is a main obstacle for a con dent application in shape recognition and description. Medial branches correspond to singularities of the medial surface and, thus, they are problematic for existing morphological and energy-based algorithms. In this paper, we use algebraic geometry concepts in an energy-based approach to compute a medial surface presenting a stable branching topology. We also present an ecient GPU-CPU implementation using standard image processing tools. We show the method computational eciency and quality on a custom made synthetic database. Finally, we present some results on a medical imaging application for localization of abdominal pathologies. |
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Elsevier B.V. |
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IAM; 600.060; 600.096; 600.075; 600.145 |
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Admin @ si @ GVB2017 |
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2775 |
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Author |
Carles Sanchez; Miguel Viñas; Coen Antens; Agnes Borras; Debora Gil |
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Title |
Back to Front Architecture for Diagnosis as a Service |
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Conference Article |
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Year |
2018 |
Publication |
20th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing |
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343-346 |
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Software as a Service (SaaS) is a cloud computing model in which a provider hosts applications in a server that customers use via internet. Since SaaS does not require to install applications on customers' own computers, it allows the use by multiple users of highly specialized software without extra expenses for hardware acquisition or licensing. A SaaS tailored for clinical needs not only would alleviate licensing costs, but also would facilitate easy access to new methods for diagnosis assistance. This paper presents a SaaS client-server architecture for Diagnosis as a Service (DaaS). The server is based on docker technology in order to allow execution of softwares implemented in different languages with the highest portability and scalability. The client is a content management system allowing the design of websites with multimedia content and interactive visualization of results allowing user editing. We explain a usage case that uses our DaaS as crowdsourcing platform in a multicentric pilot study carried out to evaluate the clinical benefits of a software for assessment of central airway obstruction. |
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Timisoara; Rumania; September 2018 |
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SYNASC |
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IAM; 600.145 |
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Admin @ si @ SVA2018 |
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3360 |
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Author |
Anton Cervantes; Gemma Sanchez; Josep Llados; Agnes Borras; A. Rodriguez |
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Title |
Biometric Recognition Based on Line Shape Descriptors |
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Conference Article |
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2005 |
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Sixth IAPR International Workshop on Graphics Recognition (GREC 2005) |
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335–344 |
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Hong Kong (China) |
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DAG @ dag @ CSL2005 |
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596 |
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Author |
Anton Cervantes; Gemma Sanchez; Josep Llados; Agnes Borras; Ana Rodriguez |
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Title |
Biometric Recognition Based on Line Shape Descriptors |
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Book Chapter |
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Year |
2006 |
Publication |
Lecture Notes in Computer Science |
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3926 |
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346–357, |
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Abstract. In this paper we propose biometric descriptors inspired by shape signatures traditionally used in graphics recognition approaches. In particular several methods based on line shape descriptors used to iden- tify newborns from the biometric information of the ears are developed. The process steps are the following: image acquisition, ear segmentation, ear normalization, feature extraction and identification. Several shape signatures are defined from contour images. These are formulated in terms of zoning and contour crossings descriptors. Experimental results are presented to demonstrate the effectiveness of the used techniques. |
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Springer Link |
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DAG @ dag @ CSL2006 |
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685 |
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Author |
Esmitt Ramirez; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil |
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Title |
BronchoX: bronchoscopy exploration software for biopsy intervention planning |
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2018 |
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Healthcare Technology Letters |
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HTL |
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5 |
Issue |
5 |
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177–182 |
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Virtual bronchoscopy (VB) is a non-invasive exploration tool for intervention planning and navigation of possible pulmonary lesions (PLs). A VB software involves the location of a PL and the calculation of a route, starting from the trachea, to reach it. The selection of a VB software might be a complex process, and there is no consensus in the community of medical software developers in which is the best-suited system to use or framework to choose. The authors present Bronchoscopy Exploration (BronchoX), a VB software to plan biopsy interventions that generate physician-readable instructions to reach the PLs. The authors’ solution is open source, multiplatform, and extensible for future functionalities, designed by their multidisciplinary research and development group. BronchoX is a compound of different algorithms for segmentation, visualisation, and navigation of the respiratory tract. Performed results are a focus on the test the effectiveness of their proposal as an exploration software, also to measure its accuracy as a guiding system to reach PLs. Then, 40 different virtual planning paths were created to guide physicians until distal bronchioles. These results provide a functional software for BronchoX and demonstrate how following simple instructions is possible to reach distal lesions from the trachea. |
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IAM; 600.096; 600.075; 601.323; 601.337; 600.145 |
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Admin @ si @ RSB2018a |
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3132 |
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Author |
Sergio Vera; Debora Gil; Agnes Borras; F. Javier Sanchez; Frederic Perez; Marius G. Linguraru; Miguel Angel Gonzalez Ballester |
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Title |
Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs |
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Book Chapter |
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2012 |
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Workshop on Computational and Clinical Applications in Abdominal Imaging |
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7029 |
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223–230 |
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medial manifolds, abdomen. |
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Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D
objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial
manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our
method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs,
exploring the use of medial manifolds for the representation of multi-organ relations. |
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Toronto; Canada; |
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Springer Link |
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Berlin |
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H. Yoshida et al |
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English |
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English |
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Lecture Notes in Computer Science |
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0302-9743 |
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978-3-642-28556-1 |
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ABDI |
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IAM;MV |
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IAM @ iam @ VGB2012 |
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1834 |
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Sergio Vera; Debora Gil; Agnes Borras; F. Javier Sanchez; Frederic Perez; Marius G. Linguraru |
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Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs |
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Conference Article |
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2011 |
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Workshop on Computational and Clinical Applications in Abdominal Imaging |
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7029 |
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223-230 |
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Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs, exploring the use of medial manifolds for the representation of multi-organ relations. |
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Nice, France |
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Springer Berlin Heidelberg |
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In H. Yoshida et al |
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IAM; MV |
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VGB2011 |
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2036 |
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Author |
Agnes Borras |
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Contributions to the Content-Based Image Retrieval Using Pictorial Queries |
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2009 |
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PhD Thesis, Universitat Autonoma de Barcelona-CVC |
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The broad access to digital cameras, personal computers and Internet, has lead to the generation of large volumes of data in digital form. If we want an effective usage of this huge amount of data, we need automatic tools to allow the retrieval of relevant information. Image data is a particular type of information that requires specific techniques of description and indexing. The computer vision field that studies these kind of techniques is called Content-Based Image Retrieval (CBIR). Instead of using text-based descriptions, a system of CBIR deals on properties that are inherent in the images themselves. Hence, the feature-based description provides a universal via of image expression in contrast with the more than 6000 languages spoken in the world.
Nowadays, the CBIR is a dynamic focus of research that has derived in important applications for many professional groups. The potential fields of application can be such diverse as: the medical domain, the crime prevention, the protection of the intel- lectual property, the journalism, the graphic design, the web search, the preservation of cultural heritage, etc.
The definition on the role of the user is a key point in the development of a CBIR application. The user is in charge to formulate the queries from which the images are retrieved. We have centered our attention on the image retrieval techniques that use queries based on pictorial information. We have identified a taxonomy composed by four main query paradigms: query-by-selection, query-by-iconic-composition, query- by-sketch and query-by-paint. Each one of these paradigms allows a different degree of user expressivity. From a simple image selection, to a complete painting of the query, the user takes control of the input in the CBIR system.
Along the chapters of this thesis we have analyzed the influence that each query paradigm imposes in the internal operations of a CBIR system. Moreover, we have proposed a set of contributions that we have exemplified in the context of a final application. |
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Barcelona (Spain) |
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Ph.D. thesis |
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Ediciones Graficas Rey |
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Bellaterra |
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Josep Llados |
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DAG @ dag @ Bor2009; IAM @ iam @ Bor2009 |
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1269 |
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