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Mariano Vazquez, Ruth Aris, Guillaume Hozeaux, R.Aubry, P.Villar, Jaume Garcia, et al. (2011). "A massively parallel computational electrophysiology model of the heart " . International Journal for Numerical Methods in Biomedical Engineering, 27, 1911–1929.
Abstract: This paper presents a patient-sensitive simulation strategy capable of using the most efficient way the high-performance computational resources. The proposed strategy directly involves three different players: Computational Mechanics Scientists (CMS), Image Processing Scientists and Cardiologists, each one mastering its own expertise area within the project. This paper describes the general integrative scheme but focusing on the CMS side presents a massively parallel implementation of computational electrophysiology applied to cardiac tissue simulation. The paper covers different angles of the computational problem: equations, numerical issues, the algorithm and parallel implementation. The proposed methodology is illustrated with numerical simulations testing all the different possibilities, ranging from small domains up to very large ones. A key issue is the almost ideal scalability not only for large and complex problems but also for medium-size meshes. The explicit formulation is particularly well suited for solving this highly transient problems, with very short time-scale.
Keywords: computational electrophysiology; parallelization; finite element methods
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Debora Gil, Petia Radeva, Jordi Saludes, & J. Mauri. (2000). "Automatic Segmentation of Artery Wall in Coronary IVUS Images: A Probabilistic Approach " In International Conference on Pattern Recognition (Vol. 4, pp. 352–355).
Abstract: Intravascular ultrasound images represent a unique tool to analyze the morphology of arteries and vessels (plaques, restenosis, etc). The poor quality of these images makes unsupervised segmentation based on traditional segmentation algorithms (such as edge or ridge/valley detection) fail to achieve the expected results. In this paper we present a probabilistic flexible template to separate different regions in the image. In particular, we use elliptic templates to model and detect the shape of the vessel inner wall in IVUS images. We present the results of successful segmentation obtained from patients undergoing stent treatment. A physician team has validated these results.
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Petia Radeva, & Enric Marti. (1995). Facial Features Segmentation by Model-Based Snakes In International Conference on Computing Analysis and Image Processing. Bellaterra (Barcelona), Spain.
Abstract: Deformable models have recently been accepted as a standard technique to segment different features in facial images. Despite they give a good approximation of the salient features in a facial image, the resulting shapes of the segmentation process seem somewhat artificial with respect to the natural feature shapes. In this paper we show that active contour models (in particular, rubber snakes) give more close and natural representation of the detected feature shape. Besides, using snakes for facial segmentation frees us from the problem of determination of the numerous weigths of deformable models. Another advantage of rubber snakes is their reduced computational cost. Our experiments using rubber snakes for segmentation of facial snapshots have shown a significant improvement compared to deformable models.
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Josep Llados, Horst Bunke, & Enric Marti. (1997). Using Cyclic String Matching to Find Rotational and Reflectional Symmetries in Shapes In Intelligent Robots: Sensing, Modeling and Planning (pp. 164–179). World Scientific Press.
Abstract: Dagstuhl Workshop
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Gemma Sanchez, Josep Llados, & Enric Marti. (1997). Segmentation and analysis of linial texture in plans In Intelligence Artificielle et Complexité.. Paris.
Abstract: The problem of texture segmentation and interpretation is one of the main concerns in the field of document analysis. Graphical documents often contain areas characterized by a structural texture whose recognition allows both the document understanding, and its storage in a more compact way. In this work, we focus on structural linial textures of regular repetition contained in plan documents. Starting from an atributed graph which represents the vectorized input image, we develop a method to segment textured areas and recognize their placement rules. We wish to emphasize that the searched textures do not follow a predefined pattern. Minimal closed loops of the input graph are computed, and then hierarchically clustered. In this hierarchical clustering, a distance function between two closed loops is defined in terms of their areas difference and boundary resemblance computed by a string matching procedure. Finally it is noted that, when the texture consists of isolated primitive elements, the same method can be used after computing a Voronoi Tesselation of the input graph.
Keywords: Structural Texture, Voronoi, Hierarchical Clustering, String Matching.
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Ferran Poveda, Debora Gil, Albert Andaluz, & Enric Marti. (2011). "Multiscale Tractography for Representing Heart Muscular Architecture " In In MICCAI 2011 Workshop on Computational Diffusion MRI.
Abstract: Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. Although the muscular architecture of the heart has been debated by countless researchers, the controversy is still alive. Diffusion Tensor MRI, DT-MRI, is a unique imaging technique for computational validation of the muscular structure of the heart. By the complex arrangement of myocites, existing techniques can not provide comprehensive descriptions of the global muscular architecture. In this paper we introduce a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and indicate a global helical organization
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Oriol Pujol, Debora Gil, & Petia Radeva. (2005). "Fundamentals of Stop and Go active models " . Image and Vision Computing, 23(8), 681–691.
Abstract: An efficient snake formulation should conform to the idea of picking the smoothest curve among all the shapes approximating an object of interest. In current geodesic snakes, the regularizing curvature also affects the convergence stage, hindering the latter at concave regions. In the present work, we make use of characteristic functions to define a novel geodesic formulation that decouples regularity and convergence. This term decoupling endows the snake with higher adaptability to non-convex shapes. Convergence is ensured by splitting the definition of the external force into an attractive vector field and a repulsive one. In our paper, we propose to use likelihood maps as approximation of characteristic functions of object appearance. The better efficiency and accuracy of our decoupled scheme are illustrated in the particular case of feature space-based segmentation.
Keywords: Deformable models; Geodesic snakes; Region-based segmentation
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Carles Sanchez, F. Javier Sanchez, Antoni Rosell, & Debora Gil. (2012). "An illumination model of the trachea appearance in videobronchoscopy images " In Image Analysis and Recognition (Vol. 7325, pp. 313–320). Lecture Notes in Computer Science. Springer Berlin Heidelberg.
Abstract: Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
Keywords: Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
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Ole Larsen, Petia Radeva, & Enric Marti. (1995). "Bounds on the optimal elasticity parameters for a snake " . Image Analysis and Processing, , 37–42.
Abstract: This paper develops a formalism by which an estimate for the upper and lower bounds for the elasticity parameters for a snake can be obtained. Objects different in size and shape give rise to different bounds. The bounds can be obtained based on an analysis of the shape of the object of interest. Experiments on synthetic images show a good correlation between the estimated behaviour of the snake and the one actually observed. Experiments on real X-ray images show that the parameters for optimal segmentation lie within the estimated bounds.
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Josep Llados, Enric Marti, & Jordi Regincos. (1993)." Interpretación de diseños a mano alzada como técnica de entrada a un sistema CAD en un ámbito de arquitectura" In III National Conference on Computer Graphics. Granada.
Abstract: En los últimos años, se ha introducido ámpliamente el uso de los sistemas CAD en dominios relacionados con la arquitectura. Dichos sistemas CAD son muy útiles para el arquitecto en el diseño de planos de plantas de edificios. Sin embargo, la utilización eficiente de un CAD requiere un tiempo de aprendizaje, en especial, en la etapa de creación y edición del diseño. Además, una vez familiarizado con un CAD, el arquitecto debe adaptarse a la simbología que éste le permite que, en algunos casos puede ser poco flexible.Con esta motivación, se propone una técnica alternativa de entrada de documentos en sistemas CAD. Dicha técnica se basa en el diseño del plano sobre papel mediante un dibujo lineal hecho a mano alzada a modo de boceto e introducido mediante scanner. Una vez interpretado este dibujo inicial e introducido en el CAD, el arquitecto sólo deber hacer sobre éste los retoques finales del documento.El sistema de entrada propuesto se compone de dos módulos principales: En primer lugar, la extracción de características (puntos característicos, rectas y arcos) de la imagen obtenida mediante scanner. En dicho módulo se aplican principalmente técnicas de procesamiento de imágenes obteniendo como resultado una representaci¢n del dibujo de entrada basada en grafos de atributos. El objetivo del segundo módulo es el de encontrar y reconocer las entidades integrantes del documento (puertas, mesas, etc.) en base a una biblioteca de símbolos definida en el sistema CAD. La implementación de dicho módulo se basa en técnicas de isomorfismo de grafos.El sistema propone una alternativa que permita, mediante el diseño a mano alzada, la introducción de la informaci¢n m s significativa del plano de forma rápida, sencilla y estandarizada por parte del usuario.
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