|
Records |
Links |
|
Author |
Juan Borrego-Carazo; Carles Sanchez; David Castells; Jordi Carrabina; Debora Gil |
|
|
Title |
BronchoPose: an analysis of data and model configuration for vision-based bronchoscopy pose estimation |
Type |
Journal Article |
|
Year |
2023 |
Publication |
Computer Methods and Programs in Biomedicine |
Abbreviated Journal |
CMPB |
|
|
Volume |
228 |
Issue |
|
Pages |
107241 |
|
|
Keywords |
Videobronchoscopy guiding; Deep learning; Architecture optimization; Datasets; Standardized evaluation framework; Pose estimation |
|
|
Abstract |
Vision-based bronchoscopy (VB) models require the registration of the virtual lung model with the frames from the video bronchoscopy to provide effective guidance during the biopsy. The registration can be achieved by either tracking the position and orientation of the bronchoscopy camera or by calibrating its deviation from the pose (position and orientation) simulated in the virtual lung model. Recent advances in neural networks and temporal image processing have provided new opportunities for guided bronchoscopy. However, such progress has been hindered by the lack of comparative experimental conditions.
In the present paper, we share a novel synthetic dataset allowing for a fair comparison of methods. Moreover, this paper investigates several neural network architectures for the learning of temporal information at different levels of subject personalization. In order to improve orientation measurement, we also present a standardized comparison framework and a novel metric for camera orientation learning. Results on the dataset show that the proposed metric and architectures, as well as the standardized conditions, provide notable improvements to current state-of-the-art camera pose estimation in video bronchoscopy. |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Elsevier |
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM; |
Approved |
no |
|
|
Call Number |
Admin @ si @ BSC2023 |
Serial |
3702 |
|
Permanent link to this record |
|
|
|
|
Author |
Carles Sanchez; Antonio Esteban Lansaque; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil |
|
|
Title |
Towards a Videobronchoscopy Localization System from Airway Centre Tracking |
Type |
Conference Article |
|
Year |
2017 |
Publication |
12th International Conference on Computer Vision Theory and Applications |
Abbreviated Journal |
|
|
|
Volume |
|
Issue |
|
Pages |
352-359 |
|
|
Keywords |
Video-bronchoscopy; Lung cancer diagnosis; Airway lumen detection; Region tracking; Guided bronchoscopy navigation |
|
|
Abstract |
Bronchoscopists use fluoroscopy to guide flexible bronchoscopy to the lesion to be biopsied without any kind of incision. Being fluoroscopy an imaging technique based on X-rays, the risk of developmental problems and cancer is increased in those subjects exposed to its application, so minimizing radiation is crucial. Alternative guiding systems such as electromagnetic navigation require specific equipment, increase the cost of the clinical procedure and still require fluoroscopy. In this paper we propose an image based guiding system based on the extraction of airway centres from intra-operative videos. Such anatomical landmarks are matched to the airway centreline extracted from a pre-planned CT to indicate the best path to the nodule. We present a
feasibility study of our navigation system using simulated bronchoscopic videos and a multi-expert validation of landmarks extraction in 3 intra-operative ultrathin explorations. |
|
|
Address |
Porto; Portugal; February 2017 |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
|
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
VISAPP |
|
|
Notes |
IAM; 600.096; 600.075; 600.145 |
Approved |
no |
|
|
Call Number |
Admin @ si @ SEB2017 |
Serial |
2943 |
|
Permanent link to this record |
|
|
|
|
Author |
Carles Sanchez; Debora Gil; Antoni Rosell; Albert Andaluz; F. Javier Sanchez |
|
|
Title |
Segmentation of Tracheal Rings in Videobronchoscopy combining Geometry and Appearance |
Type |
Conference Article |
|
Year |
2013 |
Publication |
Proceedings of the International Conference on Computer Vision Theory and Applications |
Abbreviated Journal |
|
|
|
Volume |
1 |
Issue |
|
Pages |
153--161 |
|
|
Keywords |
Video-bronchoscopy, tracheal ring segmentation, trachea geometric and appearance model |
|
|
Abstract |
Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways and minimal invasive interventions. Tracheal procedures are ordinary interventions that require measurement of the percentage of obstructed pathway for injury (stenosis) assessment. Visual assessment of stenosis in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error. Accurate detection of tracheal rings is the basis for automated estimation of the size of stenosed trachea. Processing of videobronchoscopic images acquired at the operating room is a challenging task due to the wide range of artifacts and acquisition conditions. We present a model of the geometric-appearance of tracheal rings for its detection in videobronchoscopic videos. Experiments on sequences acquired at the operating room, show a performance close to inter-observer variability |
|
|
Address |
Barcelona; February 2013 |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
SciTePress |
Place of Publication |
Portugal |
Editor |
Sebastiano Battiato and José Braz |
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
978-989-8565-47-1 |
Medium |
|
|
|
Area |
800 |
Expedition |
|
Conference |
VISAPP |
|
|
Notes |
IAM;MV; 600.044; 600.047; 600.060; 605.203 |
Approved |
no |
|
|
Call Number |
IAM @ iam @ SGR2013 |
Serial |
2123 |
|
Permanent link to this record |
|
|
|
|
Author |
Aura Hernandez-Sabate; Debora Gil; David Roche; Monica M. S. Matsumoto; Sergio S. Furuie |
|
|
Title |
Inferring the Performance of Medical Imaging Algorithms |
Type |
Conference Article |
|
Year |
2011 |
Publication |
14th International Conference on Computer Analysis of Images and Patterns |
Abbreviated Journal |
|
|
|
Volume |
6854 |
Issue |
|
Pages |
520-528 |
|
|
Keywords |
Validation, Statistical Inference, Medical Imaging Algorithms. |
|
|
Abstract |
Evaluation of the performance and limitations of medical imaging algorithms is essential to estimate their impact in social, economic or clinical aspects. However, validation of medical imaging techniques is a challenging task due to the variety of imaging and clinical problems involved, as well as, the difficulties for systematically extracting a reliable solely ground truth. Although specific validation protocols are reported in any medical imaging paper, there are still two major concerns: definition of standardized methodologies transversal to all problems and generalization of conclusions to the whole clinical data set.
We claim that both issues would be fully solved if we had a statistical model relating ground truth and the output of computational imaging techniques. Such a statistical model could conclude to what extent the algorithm behaves like the ground truth from the analysis of a sampling of the validation data set. We present a statistical inference framework reporting the agreement and describing the relationship of two quantities. We show its transversality by applying it to validation of two different tasks: contour segmentation and landmark correspondence. |
|
|
Address |
Sevilla |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springer-Verlag Berlin Heidelberg |
Place of Publication |
Berlin |
Editor |
Pedro Real; Daniel Diaz-Pernil; Helena Molina-Abril; Ainhoa Berciano; Walter Kropatsch |
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
L |
Abbreviated Series Title |
LNCS |
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
CAIP |
|
|
Notes |
IAM; ADAS |
Approved |
no |
|
|
Call Number |
IAM @ iam @ HGR2011 |
Serial |
1676 |
|
Permanent link to this record |
|
|
|
|
Author |
Debora Gil; Oriol Rodriguez-Leor; Petia Radeva; Aura Hernandez-Sabate |
|
|
Title |
Assessing Artery Motion Compensation in IVUS |
Type |
Book Chapter |
|
Year |
2007 |
Publication |
Computer Analysis Of Images And Patterns |
Abbreviated Journal |
LNCS |
|
|
Volume |
4673 |
Issue |
|
Pages |
213-220 |
|
|
Keywords |
validation standards; quality measures; IVUS motion compensation; conservation laws; Fourier development |
|
|
Abstract |
Cardiac dynamics suppression is a main issue for visual improvement and computation of tissue mechanical properties in IntraVascular UltraSound (IVUS). Although in recent times several motion compensation techniques have arisen, there is a lack of objective evaluation of motion reduction in in vivo pullbacks. We consider that the assessment protocol deserves special attention for the sake of a clinical applicability as reliable as possible. Our work focuses on defining a quality measure and a validation protocol assessing IVUS motion compensation. On the grounds of continuum mechanics laws we introduce a novel score measuring motion reduction in in vivo sequences. Synthetic experiments validate the proposed score as measure of motion parameters accuracy; while results in in vivo pullbacks show its reliability in clinical cases. |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
Springerlink |
Place of Publication |
Heidelberg |
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
978-3-540-74271-5 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM;MILAB |
Approved |
no |
|
|
Call Number |
IAM @ iam @ GRR2007 |
Serial |
1540 |
|
Permanent link to this record |
|
|
|
|
Author |
Aura Hernandez-Sabate; Debora Gil; Albert Teis |
|
|
Title |
How Do Conservation Laws Define a Motion Suppression Score in In-Vivo Ivus Sequences? |
Type |
Conference Article |
|
Year |
2007 |
Publication |
Proc. IEEE Ultrasonics Symp |
Abbreviated Journal |
|
|
|
Volume |
|
Issue |
|
Pages |
2231-2234 |
|
|
Keywords |
validation standards; IVUS motion compensation; conservation laws. |
|
|
Abstract |
Evaluation of arterial tissue biomechanics for diagnosis and treatment of cardiovascular diseases is an active research field in the biomedical imaging processing area. IntraVascular UltraSound (IVUS) is a unique tool for such assessment since it reflects tissue morphology and deformation. A proper quantification and visualization of both properties is hindered by vessel structures misalignments introduced by cardiac dynamics. This has encouraged development of IVUS motion compensation techniques. However, there is a lack of an objective evaluation of motion reduction ensuring a reliable clinical application This work reports a novel score, the Conservation of Density Rate (CDR), for validation of motion compensation in in-vivo pullbacks. Synthetic experiments validate the proposed score as measure of motion parameters accuracy; while results in in vivo pullbacks show its reliability in clinical cases. |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
|
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM |
Approved |
no |
|
|
Call Number |
IAM @ iam @ HTG2007 |
Serial |
1550 |
|
Permanent link to this record |
|
|
|
|
Author |
Marta Diez-Ferrer; Debora Gil; Elena Carreño; Susana Padrones; Samantha Aso |
|
|
Title |
Positive Airway Pressure-Enhanced CT to Improve Virtual Bronchoscopic Navigation |
Type |
Journal Article |
|
Year |
2017 |
Publication |
Journal of Thoracic Oncology |
Abbreviated Journal |
JTO |
|
|
Volume |
12 |
Issue |
1S |
Pages |
S596-S597 |
|
|
Keywords |
Thorax CT; diagnosis; Peripheral Pulmonary Nodule |
|
|
Abstract |
A main weakness of virtual bronchoscopic navigation (VBN) is unsuccessful segmentation of distal branches approaching peripheral pulmonary nodules (PPN). CT scan acquisition protocol is pivotal for segmentation covering the utmost periphery. We hypothesize that application of continuous positive airway pressure (CPAP) during CT acquisition could improve visualization and segmentation of peripheral bronchi. The purpose of the present pilot study is to compare quality of segmentations under 4 CT acquisition modes: inspiration (INSP), expiration (EXP) and both with CPAP (INSP-CPAP and EXP-CPAP). |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
|
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM; 600.096; 600.075; 600.145 |
Approved |
no |
|
|
Call Number |
Admin @ si @ DGC2017a |
Serial |
2883 |
|
Permanent link to this record |
|
|
|
|
Author |
Fernando Vilariño; Debora Gil; Petia Radeva |
|
|
Title |
A Novel FLDA Formulation for Numerical Stability Analysis |
Type |
Book Chapter |
|
Year |
2004 |
Publication |
Recent Advances in Artificial Intelligence Research and Development |
Abbreviated Journal |
|
|
|
Volume |
113 |
Issue |
|
Pages |
77-84 |
|
|
Keywords |
Supervised Learning; Linear Discriminant Analysis; Numerical Stability; Computer Vision |
|
|
Abstract |
Fisher Linear Discriminant Analysis (FLDA) is one of the most popular techniques used in classification applying dimensional reduction. The numerical scheme involves the inversion of the within-class scatter matrix, which makes FLDA potentially ill-conditioned when it becomes singular. In this paper we present a novel explicit formulation of FLDA in terms of the eccentricity ratio and eigenvector orientations of the within-class scatter matrix. An analysis of this function will characterize those situations where FLDA response is not reliable because of numerical instability. This can solve common situations of poor classification performance in computer vision. |
|
|
Address |
|
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
IOS Press |
Place of Publication |
|
Editor |
J. Vitrià, P. Radeva and I. Aguiló |
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
978-1-58603-466-5 |
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
MV;IAM;MILAB;SIAI |
Approved |
no |
|
|
Call Number |
IAM @ iam @ VGR2004 |
Serial |
1663 |
|
Permanent link to this record |
|
|
|
|
Author |
Sergio Vera; Debora Gil; Antonio Lopez; Miguel Angel Gonzalez Ballester |
|
|
Title |
Multilocal Creaseness Measure |
Type |
Journal |
|
Year |
2012 |
Publication |
The Insight Journal |
Abbreviated Journal |
IJ |
|
|
Volume |
|
Issue |
|
Pages |
|
|
|
Keywords |
Ridges, Valley, Creaseness, Structure Tensor, Skeleton, |
|
|
Abstract |
This document describes the implementation using the Insight Toolkit of an algorithm for detecting creases (ridges and valleys) in N-dimensional images, based on the Local Structure Tensor of the image. In addition to the filter used to calculate the creaseness image, a filter for the computation of the structure tensor is also included in this submission. |
|
|
Address |
|
|
|
Corporate Author |
Alma IT Systems |
Thesis |
|
|
|
Publisher |
|
Place of Publication |
|
Editor |
|
|
|
Language |
english |
Summary Language |
english |
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
|
Expedition |
|
Conference |
|
|
|
Notes |
IAM;ADAS; |
Approved |
no |
|
|
Call Number |
IAM @ iam @ VGL2012 |
Serial |
1840 |
|
Permanent link to this record |
|
|
|
|
Author |
Joan M. Nuñez; Debora Gil; Fernando Vilariño |
|
|
Title |
Finger joint characterization from X-ray images for rheymatoid arthritis assessment |
Type |
Conference Article |
|
Year |
2013 |
Publication |
6th International Conference on Biomedical Electronics and Devices |
Abbreviated Journal |
|
|
|
Volume |
|
Issue |
|
Pages |
288-292 |
|
|
Keywords |
Rheumatoid Arthritis; X-Ray; Hand Joint; Sclerosis; Sharp Van der Heijde |
|
|
Abstract |
In this study we propose amodular systemfor automatic rheumatoid arthritis assessment which provides a joint space width measure. A hand joint model is proposed based on the accurate analysis of a X-ray finger joint image sample set. This model shows that the sclerosis and the lower bone are the main necessary features in order to perform a proper finger joint characterization. We propose sclerosis and lower bone detection methods as well as the experimental setup necessary for its performance assessment. Our characterization is used to propose and compute a joint space width score which is shown to be related to the different degrees of arthritis. This assertion is verified by comparing our proposed score with Sharp Van der Heijde score, confirming that the lower our score is the more advanced is the patient affection. |
|
|
Address |
Barcelona; February 2013 |
|
|
Corporate Author |
|
Thesis |
|
|
|
Publisher |
SciTePress |
Place of Publication |
|
Editor |
|
|
|
Language |
|
Summary Language |
|
Original Title |
|
|
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
|
Series Volume |
|
Series Issue |
|
Edition |
|
|
|
ISSN |
|
ISBN |
|
Medium |
|
|
|
Area |
800 |
Expedition |
|
Conference |
BIODEVICES |
|
|
Notes |
IAM;MV; 600.057; 600.054;SIAI |
Approved |
no |
|
|
Call Number |
IAM @ iam @ NGV2013 |
Serial |
2196 |
|
Permanent link to this record |