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	Author	Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
	Title	Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy			Type	Conference Article
	Year	2011	Publication	In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging	Abbreviated Journal
	Volume	6668	Issue		Pages	76-83
	Keywords
	Abstract	This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information.
	Address	Toronto, Canada
	Corporate Author				Thesis
	Publisher	Springer Link	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title	Lecture Notes in Computer Science	Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	ABI
	Notes	MV;SIAI			Approved	no
	Call Number	IAM @ iam @ BSV2011d			Serial	1698
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	Author	Mirko Arnold; Anarta Ghosh; Gerard Lacey; Stephen Patchett; Hugh Mulcahy
	Title	Indistinct frame detection in colonoscopy videos			Type	Conference Article
	Year	2009	Publication	Machine Vision and Image Processing Conference	Abbreviated Journal
	Volume		Issue		Pages	47-52
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV			Approved	no
	Call Number	fernando @ fernando @			Serial	2424
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	Author	Rozenn Dhayot; Fernando Vilariño; Gerard Lacey
	Title	Improving the Quality of Color Colonoscopy Videos			Type	Journal Article
	Year	2008	Publication	EURASIP Journal on Image and Video Processing	Abbreviated Journal	EURASIP JIVP
	Volume	139429	Issue	1	Pages	1-9
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	fernando @ fernando @			Serial	2422
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	Author	Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
	Title	Impact of Image Preprocessing Methods on Polyp Localization in Colonoscopy Frames			Type	Conference Article
	Year	2013	Publication	35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society	Abbreviated Journal
	Volume		Issue		Pages	7350 - 7354
	Keywords
	Abstract	In this paper we present our image preprocessing methods as a key part of our automatic polyp localization scheme. These methods are used to assess the impact of different endoluminal scene elements when characterizing polyps. More precisely we tackle the influence of specular highlights, blood vessels and black mask surrounding the scene. Experimental results prove that the appropriate handling of these elements leads to a great improvement in polyp localization results.
	Address	Osaka; Japan; July 2013
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1557-170X	ISBN		Medium
	Area	800	Expedition		Conference	EMBC
	Notes	MV; 600.047; 600.060;SIAI			Approved	no
	Call Number	Admin @ si @ BSV2013			Serial	2286
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	Author	Farhan Riaz; Fernando Vilariño; Mario Dinis-Ribeiro; Miguel Coimbraln
	Title	Identifying Potentially Cancerous Tissues in Chromoendoscopy Images			Type	Conference Article
	Year	2011	Publication	5th Iberian Conference on Pattern Recognition and Image Analysis	Abbreviated Journal
	Volume	6669	Issue		Pages	709-716
	Keywords	Endoscopy, Computer Assisted Diagnosis, Gradient.
	Abstract	The dynamics of image acquisition conditions for gastroenterology imaging scenarios pose novel challenges for automatic computer assisted decision systems. Such systems should have the ability to mimic the tissue characterization of the physicians. In this paper, our objective is to compare some feature extraction methods to classify a Chromoendoscopy image into two different classes: Normal and Potentially cancerous. Results show that LoG filters generally give best classification accuracy among the other feature extraction methods considered.
	Address	Las Palmas de Gran Canaria. Spain
	Corporate Author				Thesis
	Publisher	Springer	Place of Publication	Berlin	Editor	J. Vitria, J.M. Sanches, and M. Hernandez
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-642-21256-7	Medium
	Area	800	Expedition		Conference	IbPRIA
	Notes	MV;SIAI			Approved	no
	Call Number	Admin @ si @ RVD2011; IAM @ iam @ RVD2011			Serial	1726
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	Author	Joan M. Nuñez; Debora Gil; Fernando Vilariño
	Title	Finger joint characterization from X-ray images for rheymatoid arthritis assessment			Type	Conference Article
	Year	2013	Publication	6th International Conference on Biomedical Electronics and Devices	Abbreviated Journal
	Volume		Issue		Pages	288-292
	Keywords	Rheumatoid Arthritis; X-Ray; Hand Joint; Sclerosis; Sharp Van der Heijde
	Abstract	In this study we propose amodular systemfor automatic rheumatoid arthritis assessment which provides a joint space width measure. A hand joint model is proposed based on the accurate analysis of a X-ray finger joint image sample set. This model shows that the sclerosis and the lower bone are the main necessary features in order to perform a proper finger joint characterization. We propose sclerosis and lower bone detection methods as well as the experimental setup necessary for its performance assessment. Our characterization is used to propose and compute a joint space width score which is shown to be related to the different degrees of arthritis. This assertion is verified by comparing our proposed score with Sharp Van der Heijde score, confirming that the lower our score is the more advanced is the patient affection.
	Address	Barcelona; February 2013
	Corporate Author				Thesis
	Publisher	SciTePress	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	BIODEVICES
	Notes	IAM;MV; 600.057; 600.054;SIAI			Approved	no
	Call Number	IAM @ iam @ NGV2013			Serial	2196
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	Author	Jorge Bernal; Fernando Vilariño; F. Javier Sanchez
	Title	Feature Detectors and Feature Descriptors: Where We Are Now			Type	Report
	Year	2010	Publication	CVC Technical Report	Abbreviated Journal
	Volume	154	Issue		Pages
	Keywords
	Abstract	Feature Detection and Feature Description are clearly nowadays topics. Many Computer Vision applications rely on the use of several of these techniques in order to extract the most significant aspects of an image so they can help in some tasks such as image retrieval, image registration, object recognition, object categorization and texture classification, among others. In this paper we define what Feature Detection and Description are and then we present an extensive collection of several methods in order to show the different techniques that are being used right now. The aim of this report is to provide a glimpse of what is being used currently in these fields and to serve as a starting point for future endeavours.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	Admin @ si @ BVS2010; IAM @ iam @ BVS2010			Serial	1348
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	Author	Fernando Vilariño; Stephan Ameling; Gerard Lacey; Stephen Patchett; Hugh Mulcahy
	Title	Eye Tracking Search Patterns in Expert and Trainee Colonoscopists: A Novel Method of Assessing Endoscopic Competency?			Type	Journal Article
	Year	2009	Publication	Gastrointestinal Endoscopy	Abbreviated Journal	GI
	Volume	69	Issue	5	Pages	370
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	fernando @ fernando @			Serial	2420
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	Author	Gerard Lacey; Fernando Vilariño
	Title	Endoscopy system with motion sensors			Type	Patent
	Year	2011	Publication	US 2011/0032347 A1	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	An endoscopy system (1) comprises an endoscope (2) with a camera (3) at its tip. The endoscope extends through an endoscope guide (4) for guiding movement of the endoscope and for measurement of its movement as it enters the body. The guide (4) comprises a generally conical body (5) having a through passage (105) through which the endoscope (2) extends. A motion sensor comprises an optical transmitter (7) and a detector (8) mounted alongside the passage (105) to measure the insertion-withdrawal linear motion and also rotation of the endoscope by the endoscopist's hand. The system (1) also comprises a flexure controller (10) having wheels operated by the endoscopist. The camera (3), the motion sensor (7/8), and the flexure controller (10) are all connected to a processor (11) which feeds a display.
	Address	Jacobson Holman PPLC; 400 Seventh Street, N.W. Suite 600; Whashington DC 20004 DC
	Corporate Author	USPTO			Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	IAM @ iam @ LaV2011			Serial	1703
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	Author	Santiago Segui; Laura Igual; Fernando Vilariño; Petia Radeva; Carolina Malagelada; Fernando Azpiroz; Jordi Vitria
	Title	Diagnostic System for Intestinal Motility Disfunctions Using Video Capsule Endoscopy			Type	Book Chapter
	Year	2008	Publication	Computer Vision Systems. 6th International	Abbreviated Journal
	Volume	5008	Issue		Pages	251–260
	Keywords
	Abstract	Wireless Video Capsule Endoscopy is a clinical technique consisting of the analysis of images from the intestine which are pro- vided by an ingestible device with a camera attached to it. In this paper we propose an automatic system to diagnose severe intestinal motility disfunctions using the video endoscopy data. The system is based on the application of computer vision techniques within a machine learn- ing framework in order to obtain the characterization of diverse motil- ity events from video sequences. We present experimental results that demonstrate the effectiveness of the proposed system and compare them with the ground-truth provided by the gastroenterologists.
	Address	Santorini (Greece)
	Corporate Author				Thesis
	Publisher	Springer-Verlag	Place of Publication	Berlin Heidelberg	Editor	A. Gasteratos, M. Vincze, and J.K. Tsotsos
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-540-79546-9	Medium
	Area	800	Expedition		Conference	ICVS
	Notes	OR; MV; MILAB; SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ SIV2008; IAM @ iam @ SIV2008			Serial	962
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	Author	Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
	Title	Device, system and method for measurement and analysis of contractile activity			Type	Patent
	Year	2009	Publication	US 2009/0202117 A1	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	A method and system for determining intestinal dysfunction condition are provided by classifying and analyzing image frames captured in-vivo. The method and system also relate to the detection of contractile activity in intestinal tracts, to automatic detection of video image frames taken in the gastrointestinal tract including contractile activity, and more particularly to measurement and analysis of contractile activity of the GI tract based on image intensity of in vivo image data.
	Address	Pearl Cohen Zedek Latzer
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	IAM @ iam @ VSR2009			Serial	1704
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	Author	Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
	Title	Depth of Valleys Accumulation Algorithm for Object Detection			Type	Conference Article
	Year	2011	Publication	14th Congrès Català en Intel·ligencia Artificial	Abbreviated Journal
	Volume	1	Issue	1	Pages	71-80
	Keywords	Object Recognition, Object Region Identification, Image Analysis, Image Processing
	Abstract	This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.
	Address	Lleida
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-1-60750-841-0	Medium
	Area	800	Expedition		Conference	CCIA
	Notes	MV;SIAI			Approved	no
	Call Number	IAM @ iam @ BSV2011b			Serial	1699
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	Author	Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
	Title	Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach			Type	Conference Article
	Year	2011	Publication	2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems	Abbreviated Journal
	Volume		Issue		Pages	62-71
	Keywords	Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time.
	Abstract	In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction.
	Address	Rome, Italy
	Corporate Author				Thesis
	Publisher	SciTePress	Place of Publication		Editor	Djemal, Khalifa
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	MIAD
	Notes	MV;SIAI			Approved	no
	Call Number	IAM @ iam @ BSV2011a			Serial	1695
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	Author	Santiago Segui; Michal Drozdzal; Fernando Vilariño; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria
	Title	Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy			Type	Journal Article
	Year	2012	Publication	IEEE Transactions on Information Technology in Biomedicine	Abbreviated Journal	TITB
	Volume	16	Issue	6	Pages	1341-1352
	Keywords
	Abstract	Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1089-7771	ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MILAB; MV; OR;SIAI			Approved	no
	Call Number	Admin @ si @ SDV2012			Serial	2124
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	Author	Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
	Title	Cascade analysis for intestinal contraction detection			Type	Conference Article
	Year	2006	Publication	20th International Congress and exhibition Computer Assisted Radiology and Surgery	Abbreviated Journal
	Volume		Issue		Pages	9-10
	Keywords	intestine video analysis, anisotropic features, support vector machine, cascade of classifiers
	Abstract	In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.
	Address	Osaka (Japan)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	CARS
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ VSV2006a; IAM @ iam @ VSV2006h			Serial	726
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