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	Author	Karim Lekadir; Alfiia Galimzianova; Angels Betriu; Maria del Mar Vila; Laura Igual; Daniel L. Rubin; Elvira Fernandez-Giraldez; Petia Radeva; Sandy Napel
	Title	A Convolutional Neural Network for Automatic Characterization of Plaque Composition in Carotid Ultrasound			Type	Journal Article
	Year	2017	Publication	IEEE Journal Biomedical and Health Informatics	Abbreviated Journal	J-BHI
	Volume	21	Issue	1	Pages	48-55
	Keywords
	Abstract	Characterization of carotid plaque composition, more specifically the amount of lipid core, fibrous tissue, and calcified tissue, is an important task for the identification of plaques that are prone to rupture, and thus for early risk estimation of cardiovascular and cerebrovascular events. Due to its low costs and wide availability, carotid ultrasound has the potential to become the modality of choice for plaque characterization in clinical practice. However, its significant image noise, coupled with the small size of the plaques and their complex appearance, makes it difficult for automated techniques to discriminate between the different plaque constituents. In this paper, we propose to address this challenging problem by exploiting the unique capabilities of the emerging deep learning framework. More specifically, and unlike existing works which require a priori definition of specific imaging features or thresholding values, we propose to build a convolutional neural network (CNN) that will automatically extract from the images the information that is optimal for the identification of the different plaque constituents. We used approximately 90 000 patches extracted from a database of images and corresponding expert plaque characterizations to train and to validate the proposed CNN. The results of cross-validation experiments show a correlation of about 0.90 with the clinical assessment for the estimation of lipid core, fibrous cap, and calcified tissue areas, indicating the potential of deep learning for the challenging task of automatic characterization of plaque composition in carotid ultrasound.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB; no menciona			Approved	no
	Call Number	Admin @ si @ LGB2017			Serial	2931
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	Author	Umut Guclu; Yagmur Gucluturk; Meysam Madadi; Sergio Escalera; Xavier Baro; Jordi Gonzalez; Rob van Lier; Marcel A. J. van Gerven
	Title	End-to-end semantic face segmentation with conditional random fields as convolutional, recurrent and adversarial networks			Type	Miscellaneous
	Year	2017	Publication	Arxiv	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	arXiv:1703.03305 Recent years have seen a sharp increase in the number of related yet distinct advances in semantic segmentation. Here, we tackle this problem by leveraging the respective strengths of these advances. That is, we formulate a conditional random field over a four-connected graph as end-to-end trainable convolutional and recurrent networks, and estimate them via an adversarial process. Importantly, our model learns not only unary potentials but also pairwise potentials, while aggregating multi-scale contexts and controlling higher-order inconsistencies. We evaluate our model on two standard benchmark datasets for semantic face segmentation, achieving state-of-the-art results on both of them.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA; ISE; 600.098; 600.119			Approved	no
	Call Number	Admin @ si @ GGM2017			Serial	2932
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	Author	H. Martin Kjer; Jens Fagertun; Sergio Vera; Debora Gil
	Title	Medial structure generation for registration of anatomical structures			Type	Book Chapter
	Year	2017	Publication	Skeletonization, Theory, Methods and Applications	Abbreviated Journal
	Volume	11	Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.096; 600.075; 600.145			Approved	no
	Call Number	Admin @ si @ MFV2017a			Serial	2935
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	Author	Mireia Sole; Joan Blanco; Debora Gil; Oliver Valero; G. Fonseka; M. Lawrie; Francesca Vidal; Zaida Sarrate
	Title	Chromosome Territories in Mice Spermatogenesis: A new three-dimensional methodology of study			Type	Conference Article
	Year	2017	Publication	11th European CytoGenesis Conference	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address	Florencia; Italia; July 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ECA
	Notes	IAM; 600.096; 600.145			Approved	no
	Call Number	Admin @ si @ SBG2017a			Serial	2936
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	Author	Antonio Lopez; Atsushi Imiya; Tomas Pajdla; Jose Manuel Alvarez
	Title	Computer Vision in Vehicle Technology: Land, Sea & Air			Type	Book Whole
	Year	2017	Publication		Abbreviated Journal
	Volume		Issue		Pages	161-163
	Keywords
	Abstract	Summary This chapter examines different vision-based commercial solutions for real-live problems related to vehicles. It is worth mentioning the recent astonishing performance of deep convolutional neural networks (DCNNs) in difficult visual tasks such as image classification, object recognition/localization/detection, and semantic segmentation. In fact, different DCNN architectures are already being explored for low-level tasks such as optical flow and disparity computation, and higher level ones such as place recognition.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-1-118-86807-2	Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.118			Approved	no
	Call Number	Admin @ si @ LIP2017a			Serial	2937
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	Author	Marc Bolaños; Alvaro Peris; Francisco Casacuberta; Petia Radeva
	Title	VIBIKNet: Visual Bidirectional Kernelized Network for Visual Question Answering			Type	Conference Article
	Year	2017	Publication	8th Iberian Conference on Pattern Recognition and Image Analysis	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	Visual Qestion Aswering; Convolutional Neural Networks; Long short-term memory networks
	Abstract	In this paper, we address the problem of visual question answering by proposing a novel model, called VIBIKNet. Our model is based on integrating Kernelized Convolutional Neural Networks and Long-Short Term Memory units to generate an answer given a question about an image. We prove that VIBIKNet is an optimal trade-off between accuracy and computational load, in terms of memory and time consumption. We validate our method on the VQA challenge dataset and compare it to the top performing methods in order to illustrate its performance and speed.
	Address	Faro; Portugal; June 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	IbPRIA
	Notes	MILAB; no proj			Approved	no
	Call Number	Admin @ si @ BPC2017			Serial	2939
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	Author	David Vazquez; Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Antonio Lopez; Adriana Romero; Michal Drozdzal; Aaron Courville
	Title	A Benchmark for Endoluminal Scene Segmentation of Colonoscopy Images			Type	Journal Article
	Year	2017	Publication	Journal of Healthcare Engineering	Abbreviated Journal	JHCE
	Volume		Issue		Pages	2040-2295
	Keywords	Colonoscopy images; Deep Learning; Semantic Segmentation
	Abstract	Colorectal cancer (CRC) is the third cause of cancer death world-wide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss- rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aim- ing to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extended benchmark of colonoscopy image segmentation, with the hope of establishing a new strong benchmark for colonoscopy image analysis research. The proposed dataset consists of 4 relevant classes to inspect the endolumninal scene, tar- geting different clinical needs. Together with the dataset and taking advantage of advances in semantic segmentation literature, we provide new baselines by training standard fully convolutional networks (FCN). We perform a compar- ative study to show that FCN significantly outperform, without any further post-processing, prior results in endoluminal scene segmentation, especially with respect to polyp segmentation and localization.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; MV; 600.075; 600.085; 600.076; 601.281; 600.118			Approved	no
	Call Number	VBS2017b			Serial	2940
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	Author	Carles Sanchez; Antonio Esteban Lansaque; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil
	Title	Towards a Videobronchoscopy Localization System from Airway Centre Tracking			Type	Conference Article
	Year	2017	Publication	12th International Conference on Computer Vision Theory and Applications	Abbreviated Journal
	Volume		Issue		Pages	352-359
	Keywords	Video-bronchoscopy; Lung cancer diagnosis; Airway lumen detection; Region tracking; Guided bronchoscopy navigation
	Abstract	Bronchoscopists use fluoroscopy to guide flexible bronchoscopy to the lesion to be biopsied without any kind of incision. Being fluoroscopy an imaging technique based on X-rays, the risk of developmental problems and cancer is increased in those subjects exposed to its application, so minimizing radiation is crucial. Alternative guiding systems such as electromagnetic navigation require specific equipment, increase the cost of the clinical procedure and still require fluoroscopy. In this paper we propose an image based guiding system based on the extraction of airway centres from intra-operative videos. Such anatomical landmarks are matched to the airway centreline extracted from a pre-planned CT to indicate the best path to the nodule. We present a feasibility study of our navigation system using simulated bronchoscopic videos and a multi-expert validation of landmarks extraction in 3 intra-operative ultrathin explorations.
	Address	Porto; Portugal; February 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	VISAPP
	Notes	IAM; 600.096; 600.075; 600.145			Approved	no
	Call Number	Admin @ si @ SEB2017			Serial	2943
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	Author	Marta Diez-Ferrer; Debora Gil; Elena Carreño; Susana Padrones; Samantha Aso; Vanesa Vicens; Noelia Cubero de Frutos; Rosa Lopez Lisbona; Carles Sanchez; Agnes Borras; Antoni Rosell
	Title	Positive Airway Pressure-Enhanced CT to Improve Virtual Bronchoscopic Navigation			Type	Journal Article
	Year	2017	Publication	European Respiratory Journal	Abbreviated Journal	ERJ
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	Admin @ si @ DGC2017b			Serial	3632
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	Author	Quentin Angermann; Jorge Bernal; Cristina Sanchez Montes; Maroua Hammami; Gloria Fernandez Esparrach; Xavier Dray; Olivier Romain; F. Javier Sanchez; Aymeric Histace
	Title	Real-Time Polyp Detection in Colonoscopy Videos: A Preliminary Study For Adapting Still Frame-based Methodology To Video Sequences Analysis			Type	Conference Article
	Year	2017	Publication	31st International Congress and Exhibition on Computer Assisted Radiology and Surgery	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address	Barcelona; Spain; June 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	CARS
	Notes	MV; no menciona			Approved	no
	Call Number	Admin @ si @ ABS2017			Serial	2947
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	Author	Jorge Bernal; Nima Tajkbaksh; F. Javier Sanchez; Bogdan J. Matuszewski; Hao Chen; Lequan Yu; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Sungbin Choi; Quentin Debard; Lena Maier Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez Montes; Suryakanth R. Gurudu; Gloria Fernandez Esparrach; Xavier Dray; Jianming Liang; Aymeric Histace
	Title	Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge			Type	Journal Article
	Year	2017	Publication	IEEE Transactions on Medical Imaging	Abbreviated Journal	TMI
	Volume	36	Issue	6	Pages	1231 - 1249
	Keywords	Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework
	Abstract	Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MV; 600.096; 600.075			Approved	no
	Call Number	Admin @ si @ BTS2017			Serial	2949
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	Author	Hana Jarraya; Oriol Ramos Terrades; Josep Llados
	Title	Graph Embedding through Probabilistic Graphical Model applied to Symbolic Graphs			Type	Conference Article
	Year	2017	Publication	8th Iberian Conference on Pattern Recognition and Image Analysis	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	Attributed Graph; Probabilistic Graphical Model; Graph Embedding; Structured Support Vector Machines
	Abstract	We propose a new Graph Embedding (GEM) method that takes advantages of structural pattern representation. It models an Attributed Graph (AG) as a Probabilistic Graphical Model (PGM). Then, it learns the parameters of this PGM presented by a vector. This vector is a signature of AG in a lower dimensional vectorial space. We apply Structured Support Vector Machines (SSVM) to process classification task. As first tentative, results on the GREC dataset are encouraging enough to go further on this direction.
	Address	Faro; Portugal; June 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	IbPRIA
	Notes	DAG; 600.097; 600.121			Approved	no
	Call Number	Admin @ si @ JRL2017a			Serial	2953
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	Author	Lasse Martensson; Anders Hast; Alicia Fornes
	Title	Word Spotting as a Tool for Scribal Attribution			Type	Conference Article
	Year	2017	Publication	2nd Conference of the association of Digital Humanities in the Nordic Countries	Abbreviated Journal
	Volume		Issue		Pages	87-89
	Keywords
	Abstract
	Address	Gothenburg; Suecia; March 2017
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-91-88348-83-8	Medium
	Area		Expedition		Conference	DHN
	Notes	DAG; 600.097; 600.121			Approved	no
	Call Number	Admin @ si @ MHF2017			Serial	2954
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	Author	Pau Riba; Alicia Fornes; Josep Llados
	Title	Towards the Alignment of Handwritten Music Scores			Type	Book Chapter
	Year	2017	Publication	International Workshop on Graphics Recognition. GREC 2015.Graphic Recognition. Current Trends and Challenges	Abbreviated Journal
	Volume	9657	Issue		Pages	103-116
	Keywords	Optical Music Recognition; Handwritten Music Scores; Dynamic Time Warping alignment
	Abstract	It is very common to nd dierent versions of the same music work in archives of Opera Theaters. These dierences correspond to modications and annotations from the musicians. From the musicologist point of view, these variations are very interesting and deserve study. This paper explores the alignment of music scores as a tool for automatically detecting the passages that contain such dierences. Given the diculties in the recognition of handwritten music scores, our goal is to align the music scores and at the same time, avoid the recognition of music elements as much as possible. After removing the sta lines, braces and ties, the bar lines are detected. Then, the bar units are described as a whole using the Blurred Shape Model. The bar units alignment is performed by using Dynamic Time Warping. The analysis of the alignment path is used to detect the variations in the music scores. The method has been evaluated on a subset of the CVC-MUSCIMA dataset, showing encouraging results.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor	Bart Lamiroy; R Dueire Lins
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-319-52158-9	Medium
	Area		Expedition		Conference
	Notes	DAG; 600.097; 602.006; 600.121			Approved	no
	Call Number	Admin @ si @ RFL2017			Serial	2955
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	Author	Joan Serrat; Felipe Lumbreras; Francisco Blanco; Manuel Valiente; Montserrat Lopez-Mesas
	Title	myStone: A system for automatic kidney stone classification			Type	Journal Article
	Year	2017	Publication	Expert Systems with Applications	Abbreviated Journal	ESA
	Volume	89	Issue		Pages	41-51
	Keywords	Kidney stone; Optical device; Computer vision; Image classification
	Abstract	Kidney stone formation is a common disease and the incidence rate is constantly increasing worldwide. It has been shown that the classification of kidney stones can lead to an important reduction of the recurrence rate. The classification of kidney stones by human experts on the basis of certain visual color and texture features is one of the most employed techniques. However, the knowledge of how to analyze kidney stones is not widespread, and the experts learn only after being trained on a large number of samples of the different classes. In this paper we describe a new device specifically designed for capturing images of expelled kidney stones, and a method to learn and apply the experts knowledge with regard to their classification. We show that with off the shelf components, a carefully selected set of features and a state of the art classifier it is possible to automate this difficult task to a good degree. We report results on a collection of 454 kidney stones, achieving an overall accuracy of 63% for a set of eight classes covering almost all of the kidney stones taxonomy. Moreover, for more than 80% of samples the real class is the first or the second most probable class according to the system, being then the patient recommendations for the two top classes similar. This is the first attempt towards the automatic visual classification of kidney stones, and based on the current results we foresee better accuracies with the increase of the dataset size.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; MSIAU; 603.046; 600.122; 600.118			Approved	no
	Call Number	Admin @ si @ SLB2017			Serial	3026
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