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Ana Garcia Rodriguez, Jorge Bernal, F. Javier Sanchez, Henry Cordova, Rodrigo Garces Duran, Cristina Rodriguez de Miguel, et al. (2020). Polyp fingerprint: automatic recognition of colorectal polyps’ unique features. SEND - Surgical Endoscopy and other Interventional Techniques, 34(4), 1887–1889.
Abstract: BACKGROUND:
Content-based image retrieval (CBIR) is an application of machine learning used to retrieve images by similarity on the basis of features. Our objective was to develop a CBIR system that could identify images containing the same polyp ('polyp fingerprint').
METHODS:
A machine learning technique called Bag of Words was used to describe each endoscopic image containing a polyp in a unique way. The system was tested with 243 white light images belonging to 99 different polyps (for each polyp there were at least two images representing it in two different temporal moments). Images were acquired in routine colonoscopies at Hospital Clínic using high-definition Olympus endoscopes. The method provided for each image the closest match within the dataset.
RESULTS:
The system matched another image of the same polyp in 221/243 cases (91%). No differences were observed in the number of correct matches according to Paris classification (protruded: 90.7% vs. non-protruded: 91.3%) and size (< 10 mm: 91.6% vs. > 10 mm: 90%).
CONCLUSIONS:
A CBIR system can match accurately two images containing the same polyp, which could be a helpful aid for polyp image recognition.
KEYWORDS:
Artificial intelligence; Colorectal polyps; Content-based image retrieval
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Arturo Fuentes, F. Javier Sanchez, Thomas Voncina, & Jorge Bernal. (2021). LAMV: Learning to Predict Where Spectators Look in Live Music Performances. In 16th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (Vol. 5, pp. 500–507).
Abstract: The advent of artificial intelligence has supposed an evolution on how different daily work tasks are performed. The analysis of cultural content has seen a huge boost by the development of computer-assisted methods that allows easy and transparent data access. In our case, we deal with the automation of the production of live shows, like music concerts, aiming to develop a system that can indicate the producer which camera to show based on what each of them is showing. In this context, we consider that is essential to understand where spectators look and what they are interested in so the computational method can learn from this information. The work that we present here shows the results of a first preliminary study in which we compare areas of interest defined by human beings and those indicated by an automatic system. Our system is based on the extraction of motion textures from dynamic Spatio-Temporal Volumes (STV) and then analyzing the patterns by means of texture analysis techniques. We validate our approach over several video sequences that have been labeled by 16 different experts. Our method is able to match those relevant areas identified by the experts, achieving recall scores higher than 80% when a distance of 80 pixels between method and ground truth is considered. Current performance shows promise when detecting abnormal peaks and movement trends.
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Gloria Fernandez Esparrach, Jorge Bernal, Cristina Rodriguez de Miguel, Debora Gil, Fernando Vilariño, Henry Cordova, et al. (2016). Utilidad de la visión por computador para la localización de pólipos pequeños y planos. In XIX Reunión Nacional de la Asociación Española de Gastroenterología, Gastroenterology Hepatology (Vol. 39, 94).
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Gloria Fernandez Esparrach, Jorge Bernal, Cristina Rodriguez de Miguel, Debora Gil, Fernando Vilariño, Henry Cordova, et al. (2015). Colonic polyps are correctly identified by a computer vision method using wm-dova energy maps. In Proceedings of 23 United European- UEG Week 2015.
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Jorge Bernal, F. Javier Sanchez, Gloria Fernandez Esparrach, Debora Gil, Cristina Rodriguez de Miguel, & Fernando Vilariño. (2015). WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians. CMIG - Computerized Medical Imaging and Graphics, 43, 99–111.
Abstract: We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice.
Keywords: Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection
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Carles Sanchez, Jorge Bernal, Debora Gil, & F. Javier Sanchez. (2013). On-line lumen centre detection in gastrointestinal and respiratory endoscopy. In Klaus Miguel Angel and Drechsler Stefan and González Ballester Raj and Wesarg Cristina and Shekhar Marius George and Oyarzun Laura M. and L. Erdt (Ed.), Second International Workshop Clinical Image-Based Procedures (Vol. 8361, pp. 31–38). LNCS. Springer International Publishing.
Abstract: We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %).
Keywords: Lumen centre detection; Bronchoscopy; Colonoscopy
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Jorge Bernal, Debora Gil, Carles Sanchez, & F. Javier Sanchez. (2014). Discarding Non Informative Regions for Efficient Colonoscopy Image Analysis. In 1st MICCAI Workshop on Computer-Assisted and Robotic Endoscopy (Vol. 8899, pp. 1–10). LNCS. Springer International Publishing.
Abstract: In this paper we present a novel polyp region segmentation method for colonoscopy videos. Our method uses valley information associated to polyp boundaries in order to provide an initial segmentation. This first segmentation is refined to eliminate boundary discontinuities caused by image artifacts or other elements of the scene. Experimental results over a publicly annotated database show that our method outperforms both general and specific segmentation methods by providing more accurate regions rich in polyp content. We also prove how image preprocessing is needed to improve final polyp region segmentation.
Keywords: Image Segmentation; Polyps, Colonoscopy; Valley Information; Energy Maps
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Fernando Vilariño, & Dimosthenis Karatzas. (2015). The Library Living Lab. In Open Living Lab Days.
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Fernando Vilariño, Dimosthenis Karatzas, Marcos Catalan, & Alberto Valcarcel. (2015). An horizon for the Public Library as a place for innovation and creativity. The Library Living Lab in Volpelleres. In The White Book on Public Library Network from Diputació de Barcelona.
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Fernando Vilariño. (2019). Library Living Lab, Numérisation 3D des chapiteaux du cloître de Saint-Cugat : des citoyens co- créant le nouveau patrimoine culturel numérique. In Intersectorialité et approche Living Labs. Entretiens Jacques-Cartier.
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Fernando Vilariño. (2019). Public Libraries Exploring how technology transforms the cultural experience of people. In Workshop on Social Impact of AI. Open Living Lab Days Conference..
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Fernando Vilariño. (2019). 3D Scanning of Capitals at Library Living Lab.
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Fernando Vilariño. (2020). Unveiling the Social Impact of AI. In Workshop at Digital Living Lab Days Conference.
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Fernando Vilariño, & Dimosthenis Karatzas. (2016). A Living Lab approach for Citizen Science in Libraries. In 1st International ECSA Conference.
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Joan M. Nuñez, Jorge Bernal, Miquel Ferrer, & Fernando Vilariño. (2014). Impact of Keypoint Detection on Graph-based Characterization of Blood Vessels in Colonoscopy Videos. In CARE workshop.
Abstract: We explore the potential of the use of blood vessels as anatomical landmarks for developing image registration methods in colonoscopy images. An unequivocal representation of blood vessels could be used to guide follow-up methods to track lesions over different interventions. We propose a graph-based representation to characterize network structures, such as blood vessels, based on the use of intersections and endpoints. We present a study consisting of the assessment of the minimal performance a keypoint detector should achieve so that the structure can still be recognized. Experimental results prove that, even by achieving a loss of 35% of the keypoints, the descriptive power of the associated graphs to the vessel pattern is still high enough to recognize blood vessels.
Keywords: Colonoscopy; Graph Matching; Biometrics; Vessel; Intersection
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