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Author |
Onur Ferhat; Fernando Vilariño |
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Title |
Low Cost Eye Tracking: The Current Panorama |
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Journal Article |
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2016 |
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Computational Intelligence and Neuroscience |
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Article ID 8680541 |
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Despite the availability of accurate, commercial gaze tracker devices working with infrared (IR) technology, visible light gaze tracking constitutes an interesting alternative by allowing scalability and removing hardware requirements. Over the last years, this field has seen examples of research showing performance comparable to the IR alternatives. In this work, we survey the previous work on remote, visible light gaze trackers and analyze the explored techniques from various perspectives such as calibration strategies, head pose invariance, and gaze estimation techniques. We also provide information on related aspects of research such as public datasets to test against, open source projects to build upon, and gaze tracking services to directly use in applications. With all this information, we aim to provide the contemporary and future researchers with a map detailing previously explored ideas and the required tools. |
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MV; 605.103; 600.047; 600.097;SIAI |
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Admin @ si @ FeV2016 |
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2744 |
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Author |
Fernando Vilariño; Dan Norton; Onur Ferhat |
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Title |
The Eye Doesn't Click – Eyetracking and Digital Content Interaction |
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Conference Article |
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2016 |
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4S/EASST Conference |
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Barcelona; Spain; September 2016 |
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MV; 600.097;SIAI |
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Admin @ si @VNF2016 |
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2801 |
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Author |
Fernando Vilariño |
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Title |
Giving Value to digital collections in the Public Library |
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2016 |
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Librarian 2020 |
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Brussels; Belgium; October 2016 |
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LIB |
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MV; 600.097;SIAI |
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Admin @ si @Vil2016a |
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2802 |
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Author |
Fernando Vilariño |
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Title |
Dissemination, creation and education from archives: Case study of the collection of Digitized Visual Poems from Joan Brossa Foundation |
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2016 |
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International Workshop on Poetry: Archives, Poetries and Receptions |
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Barcelona; Spain; October 2016 |
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POETRY |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.097;SIAI |
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no |
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Admin @ si @Vil2016b |
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2805 |
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Author |
Fernando Vilariño; Dan Norton |
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Title |
Using mutimedia tools to spread poetry collections |
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Conference Article |
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2017 |
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Internet librarian International Conference |
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London; UK; October 2017 |
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ILI |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.097;SIAI |
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Call Number |
Admin @ si @ ViN2017 |
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3031 |
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Author |
Fernando Vilariño |
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Title |
Citizen experience as a powerful communication tool: Open Innovation and the role of Living Labs in EU |
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Conference Article |
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2017 |
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European Conference of Science Journalists |
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The Open Innovation 2.0 model spearheaded by the European Commission introduces conceptual changes in how innovation processes should be developed. The notion of an innovation ecosystem, and the active participation of the citizens (and all the different actors of the quadruple helix) in innovation processes, opens up new channels for scientific communication, where the citizens (and all actors) can be naturally reached and facilitate the spread of the scientific message in their communities. Unleashing the power of such mechanisms, while maintaining control over the scientific communication done through such channels presents an opportunity and a challenge at the same time.
This workshop will look into key concepts that the Open Innovation 2.0 EU model introduces, and what new opportunities for communication they bring about. Specifically, we will focus on Living Labs, as a key instrument for implementing this innovation model at the regional level, and their potential in creating scientific dissemination spaces. |
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Copenhagen; June 2017 |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.097;SIAI |
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no |
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Admin @ si @ Vil2017a |
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3032 |
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Author |
F. Javier Sanchez; Jorge Bernal; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; Gloria Fernandez Esparrach |
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Title |
Bright spot regions segmentation and classification for specular highlights detection in colonoscopy videos |
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Journal Article |
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2017 |
Publication |
Machine Vision and Applications |
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MVAP |
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1-20 |
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Specular highlights; bright spot regions segmentation; region classification; colonoscopy |
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A novel specular highlights detection method in colonoscopy videos is presented. The method is based on a model of appearance dening specular
highlights as bright spots which are highly contrasted with respect to adjacent regions. Our approach proposes two stages; segmentation, and then classication
of bright spot regions. The former denes a set of candidate regions obtained through a region growing process with local maxima as initial region seeds. This process creates a tree structure which keeps track, at each growing iteration, of the region frontier contrast; nal regions provided depend on restrictions over contrast value. Non-specular regions are ltered through a classication stage performed by a linear SVM classier using model-based features from each region. We introduce a new validation database with more than 25; 000 regions along with their corresponding pixel-wise annotations. We perform a comparative study against other approaches. Results show that our method is superior to other approaches, with our segmented regions being
closer to actual specular regions in the image. Finally, we also present how our methodology can also be used to obtain an accurate prediction of polyp histology. |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.096; 600.175 |
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Admin @ si @ SBS2017 |
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2975 |
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Cristina Sanchez Montes; F. Javier Sanchez; Jorge Bernal; Henry Cordova; Maria Lopez Ceron; Miriam Cuatrecasas; Cristina Rodriguez de Miguel; Ana Garcia Rodriguez; Rodrigo Garces Duran; Maria Pellise; Josep Llach; Gloria Fernandez Esparrach |
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Title |
Computer-aided Prediction of Polyp Histology on White-Light Colonoscopy using Surface Pattern Analysis |
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Journal Article |
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2019 |
Publication |
Endoscopy |
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END |
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51 |
Issue |
3 |
Pages |
261-265 |
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Background and study aims: To evaluate a new computational histology prediction system based on colorectal polyp textural surface patterns using high definition white light images.
Patients and methods: Textural elements (textons) were characterized according to their contrast with respect to the surface, shape and number of bifurcations, assuming that dysplastic polyps are associated with highly contrasted, large tubular patterns with some degree of bifurcation. Computer-aided diagnosis (CAD) was compared with pathological diagnosis and the diagnosis by the endoscopists using Kudo and NICE classification.
Results: Images of 225 polyps were evaluated (142 dysplastic and 83 non-dysplastic). CAD system correctly classified 205 (91.1%) polyps, 131/142 (92.3%) dysplastic and 74/83 (89.2%) non-dysplastic. For the subgroup of 100 diminutive (<5 mm) polyps, CAD correctly classified 87 (87%) polyps, 43/50 (86%) dysplastic and 44/50 (88%) non-dysplastic. There were not statistically significant differences in polyp histology prediction based on CAD system and on endoscopist assessment.
Conclusion: A computer vision system based on the characterization of the polyp surface in the white light accurately predicts colorectal polyp histology. |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.096; 600.119; 600.075 |
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Admin @ si @ SSB2019 |
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3164 |
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Jorge Bernal; Aymeric Histace; Marc Masana; Quentin Angermann; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; Maroua Hammami; Ana Garcia Rodriguez; Henry Cordova; Olivier Romain; Gloria Fernandez Esparrach; Xavier Dray; F. Javier Sanchez |
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Title |
GTCreator: a flexible annotation tool for image-based datasets |
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Journal Article |
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2019 |
Publication |
International Journal of Computer Assisted Radiology and Surgery |
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IJCAR |
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14 |
Issue |
2 |
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191–201 |
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Annotation tool; Validation Framework; Benchmark; Colonoscopy; Evaluation |
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Abstract Purpose: Methodology evaluation for decision support systems for health is a time consuming-task. To assess performance of polyp detection
methods in colonoscopy videos, clinicians have to deal with the annotation
of thousands of images. Current existing tools could be improved in terms of
exibility and ease of use. Methods:We introduce GTCreator, a exible annotation tool for providing image and text annotations to image-based datasets.
It keeps the main basic functionalities of other similar tools while extending
other capabilities such as allowing multiple annotators to work simultaneously
on the same task or enhanced dataset browsing and easy annotation transfer aiming to speed up annotation processes in large datasets. Results: The
comparison with other similar tools shows that GTCreator allows to obtain
fast and precise annotation of image datasets, being the only one which offers
full annotation editing and browsing capabilites. Conclusions: Our proposed
annotation tool has been proven to be efficient for large image dataset annota-
tion, as well as showing potential of use in other stages of method evaluation
such as experimental setup or results analysis. |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.096; 600.109; 600.119; 601.305 |
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Admin @ si @ BHM2019 |
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3163 |
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Jorge Bernal; Nima Tajkbaksh; F. Javier Sanchez; Bogdan J. Matuszewski; Hao Chen; Lequan Yu; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Sungbin Choi; Quentin Debard; Lena Maier Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez Montes; Suryakanth R. Gurudu; Gloria Fernandez Esparrach; Xavier Dray; Jianming Liang; Aymeric Histace |
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Title |
Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge |
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Journal Article |
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2017 |
Publication |
IEEE Transactions on Medical Imaging |
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TMI |
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36 |
Issue |
6 |
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1231 - 1249 |
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Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework |
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Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted
Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance. |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.096; 600.075 |
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Admin @ si @ BTS2017 |
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2949 |
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Quentin Angermann; Jorge Bernal; Cristina Sanchez Montes; Gloria Fernandez Esparrach; Xavier Gray; Olivier Romain; F. Javier Sanchez; Aymeric Histace |
![download PDF file pdf](img/file_PDF.gif)
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Title |
Towards Real-Time Polyp Detection in Colonoscopy Videos: Adapting Still Frame-Based Methodologies for Video Sequences Analysis |
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Conference Article |
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2017 |
Publication |
4th International Workshop on Computer Assisted and Robotic Endoscopy |
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29-41 |
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Polyp detection; colonoscopy; real time; spatio temporal coherence |
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Colorectal cancer is the second cause of cancer death in United States: precursor lesions (polyps) detection is key for patient survival. Though colonoscopy is the gold standard screening tool, some polyps are still missed. Several computational systems have been proposed but none of them are used in the clinical room mainly due to computational constraints. Besides, most of them are built over still frame databases, decreasing their performance on video analysis due to the lack of output stability and not coping with associated variability on image quality and polyp appearance. We propose a strategy to adapt these methods to video analysis by adding a spatio-temporal stability module and studying a combination of features to capture polyp appearance variability. We validate our strategy, incorporated on a real-time detection method, on a public video database. Resulting method detects all
polyps under real time constraints, increasing its performance due to our
adaptation strategy. |
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Quebec; Canada; September 2017 |
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MV; 600.096; 600.075 |
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Admin @ si @ ABS2017b |
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2977 |
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Jorge Bernal; Joan M. Nuñez; F. Javier Sanchez; Fernando Vilariño |
![download PDF file pdf](img/file_PDF.gif)
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Title |
Polyp Segmentation Method in Colonoscopy Videos by means of MSA-DOVA Energy Maps Calculation |
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Conference Article |
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2014 |
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3rd MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging |
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8680 |
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41-49 |
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Image segmentation; Polyps; Colonoscopy; Valley information; Energy maps |
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In this paper we present a novel polyp region segmentation method for colonoscopy videos. Our method uses valley information associated to polyp boundaries in order to provide an initial segmentation. This first segmentation is refined to eliminate boundary discontinuities caused by image artifacts or other elements of the scene. Experimental results over a publicly annotated database show that our method outperforms both general and specific segmentation methods by providing more accurate regions rich in polyp content. We also prove how image preprocessing is needed to improve final polyp region segmentation. |
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Boston; USA; September 2014 |
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CLIP |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.060; 600.044; 600.047;SIAI |
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Admin @ si @ BNS2014 |
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2502 |
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Author |
Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño |
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Title |
Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization |
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Conference Article |
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2013 |
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Proceedings of the International Conference on Computer Vision Theory and Applications |
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1 |
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162-171 |
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Colonoscopy; Blood vessel; Linear features; Valley detection |
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Abstract |
This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization
algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance. |
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Barcelona; February 2013 |
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SciTePress |
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800 |
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VISIGRAPP |
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Notes ![sorted by Notes field, descending order (down)](img/sort_desc.gif) |
MV; 600.054; 600.057;SIAI |
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IAM @ iam @ NBS2013 |
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2198 |
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Author |
Jorge Bernal; F. Javier Sanchez; Fernando Vilariño |
![download PDF file pdf](img/file_PDF.gif)
![find record details (via OpenURL) openurl](img/xref.gif)
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Title |
Impact of Image Preprocessing Methods on Polyp Localization in Colonoscopy Frames |
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Conference Article |
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Year |
2013 |
Publication |
35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society |
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7350 - 7354 |
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In this paper we present our image preprocessing methods as a key part of our automatic polyp localization scheme. These methods are used to assess the impact of different endoluminal scene elements when characterizing polyps. More precisely we tackle the influence of specular highlights, blood vessels and black mask surrounding the scene. Experimental results prove that the appropriate handling of these elements leads to a great improvement in polyp localization results. |
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Osaka; Japan; July 2013 |
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1557-170X |
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800 |
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EMBC |
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MV; 600.047; 600.060;SIAI |
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Admin @ si @ BSV2013 |
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2286 |
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Author |
Jorge Bernal; Fernando Vilariño; F. Javier Sanchez; M. Arnold; Anarta Ghosh; Gerard Lacey |
![download PDF file pdf](img/file_PDF.gif)
![find book details (via ISBN) isbn](img/isbn.gif)
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Title |
Experts vs Novices: Applying Eye-tracking Methodologies in Colonoscopy Video Screening for Polyp Search |
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Conference Article |
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2014 |
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2014 Symposium on Eye Tracking Research and Applications |
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223-226 |
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We present in this paper a novel study aiming at identifying the differences in visual search patterns between physicians of diverse levels of expertise during the screening of colonoscopy videos. Physicians were clustered into two groups -experts and novices- according to the number of procedures performed, and fixations were captured by an eye-tracker device during the task of polyp search in different video sequences. These fixations were integrated into heat maps, one for each cluster. The obtained maps were validated over a ground truth consisting of a mask of the polyp, and the comparison between experts and novices was performed by using metrics such as reaction time, dwelling time and energy concentration ratio. Experimental results show a statistically significant difference between experts and novices, and the obtained maps show to be a useful tool for the characterisation of the behaviour of each group. |
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USA; March 2014 |
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978-1-4503-2751-0 |
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ETRA |
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MV; 600.047; 600.060;SIAI |
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Admin @ si @ BVS2014 |
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2448 |
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