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Francesc Carreras; Jaume Garcia; Debora Gil; Sandra Pujadas; Chi ho Lion; R.Suarez-Arias; R.Leta; Xavier Alomar; Manuel Ballester; Guillem Pons-Llados |
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Left ventricular torsion and longitudinal shortening: two fundamental components of myocardial mechanics assessed by tagged cine-MRI in normal subjects |
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Journal Article |
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2012 |
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International Journal of Cardiovascular Imaging |
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IJCI |
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28 |
Issue |
2 |
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273-284 |
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Magnetic resonance imaging (MRI); Tagging MRI; Cardiac mechanics; Ventricular torsion |
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Cardiac magnetic resonance imaging (Cardiac MRI) has become a gold standard diagnostic technique for the assessment of cardiac mechanics, allowing the non-invasive calculation of left ventric- ular long axis longitudinal shortening (LVLS) and absolute myocardial torsion (AMT) between basal and apical left ventricular slices, a movement directly related to the helicoidal anatomic disposition of the myocardial fibers. The aim of this study is to determine AMT and LVLS behaviour and normal values from a group of healthy subjects. A group of 21 healthy volunteers (15 males) (age: 23–55 y.o., mean:30.7 ± 7.5) were prospectively included in an obser- vational study by Cardiac MRI. Left ventricular rotation (degrees) was calculated by custom-made software (Harmonic Phase Flow) in consecutive LV short axis planes tagged cine-MRI sequences. AMT was determined from the difference between basal and apical planes LV rotations. LVLS (%) was determined from the LV longitudinal and horizontal axis cine-MRI images. All the 21 cases studied were interpretable, although in three cases the value of the LV apical rotation could not be determined. The mean rotation of the basal and apical planes at end-systole were -3.71° ± 0.84° and 6.73° ± 1.69° (n:18) respectively, resulting in a LV mean AMT of 10.48° ± 1.63° (n:18). End-systolic mean LVLS was 19.07 ± 2.71%. Cardiac MRI allows for the calculation of AMT and LVLS, fundamental functional components of the ventricular twist mechanics conditioned, in turn, by the anatomical helical layout of the myocardial fibers. These values provide complementary information about systolic ventricular function in relation to the traditional parameters used in daily practice. |
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Springer Netherlands |
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1569-5794 |
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IAM; |
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IAM @ iam @ CGG2012 |
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1496 |
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Frederic Sampedro; Sergio Escalera; Anna Puig |
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Title |
Iterative Multiclass Multiscale Stacked Sequential Learning: definition and application to medical volume segmentation |
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Journal Article |
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2014 |
Publication |
Pattern Recognition Letters |
Abbreviated Journal |
PRL |
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46 |
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1-10 |
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Machine learning; Sequential learning; Multi-class problems; Contextual learning; Medical volume segmentation |
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In this work we present the iterative multi-class multi-scale stacked sequential learning framework (IMMSSL), a novel learning scheme that is particularly suited for medical volume segmentation applications. This model exploits the inherent voxel contextual information of the structures of interest in order to improve its segmentation performance results. Without any feature set or learning algorithm prior assumption, the proposed scheme directly seeks to learn the contextual properties of a region from the predicted classifications of previous classifiers within an iterative scheme. Performance results regarding segmentation accuracy in three two-class and multi-class medical volume datasets show a significant improvement with respect to state of the art alternatives. Due to its easiness of implementation and its independence of feature space and learning algorithm, the presented machine learning framework could be taken into consideration as a first choice in complex volume segmentation scenarios. |
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HuPBA;MILAB |
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Admin @ si @ SEP2014 |
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2550 |
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Zhen Xu; Sergio Escalera; Adrien Pavao; Magali Richard; Wei-Wei Tu; Quanming Yao; Huan Zhao; Isabelle Guyon |
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Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform |
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Journal Article |
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2022 |
Publication |
Patterns |
Abbreviated Journal |
PATTERNS |
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3 |
Issue |
7 |
Pages |
100543 |
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Machine learning; data science; benchmark platform; reproducibility; competitions |
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Obtaining a standardized benchmark of computational methods is a major issue in data-science communities. Dedicated frameworks enabling fair benchmarking in a unified environment are yet to be developed. Here, we introduce Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks. A public instance of Codabench is open to everyone free of charge and allows benchmark organizers to fairly compare submissions under the same setting (software, hardware, data, algorithms), with custom protocols and data formats. Codabench has unique features facilitating easy organization of flexible and reproducible benchmarks, such as the possibility of reusing templates of benchmarks and supplying compute resources on demand. Codabench has been used internally and externally on various applications, receiving more than 130 users and 2,500 submissions. As illustrative use cases, we introduce four diverse benchmarks covering graph machine learning, cancer heterogeneity, clinical diagnosis, and reinforcement learning. |
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June 24, 2022 |
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Science Direct |
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HuPBA |
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Admin @ si @ XEP2022 |
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3764 |
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Mingyi Yang; Fei Yang; Luka Murn; Marc Gorriz Blanch; Juil Sock; Shuai Wan; Fuzheng Yang; Luis Herranz |
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Title |
Task-Switchable Pre-Processor for Image Compression for Multiple Machine Vision Tasks |
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2024 |
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IEEE Transactions on Circuits and Systems for Video Technology |
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M Yang, F Yang, L Murn, MG Blanch, J Sock, S Wan, F Yang, L Herranz |
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Visual content is increasingly being processed by machines for various automated content analysis tasks instead of being consumed by humans. Despite the existence of several compression methods tailored for machine tasks, few consider real-world scenarios with multiple tasks. In this paper, we aim to address this gap by proposing a task-switchable pre-processor that optimizes input images specifically for machine consumption prior to encoding by an off-the-shelf codec designed for human consumption. The proposed task-switchable pre-processor adeptly maintains relevant semantic information based on the specific characteristics of different downstream tasks, while effectively suppressing irrelevant information to reduce bitrate. To enhance the processing of semantic information for diverse tasks, we leverage pre-extracted semantic features to modulate the pixel-to-pixel mapping within the pre-processor. By switching between different modulations, multiple tasks can be seamlessly incorporated into the system. Extensive experiments demonstrate the practicality and simplicity of our approach. It significantly reduces the number of parameters required for handling multiple tasks while still delivering impressive performance. Our method showcases the potential to achieve efficient and effective compression for machine vision tasks, supporting the evolving demands of real-world applications. |
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xxx |
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Admin @ si @ YYM2024 |
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4007 |
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Marta Diez-Ferrer; Arturo Morales; Rosa Lopez Lisbona; Noelia Cubero; Cristian Tebe; Susana Padrones; Samantha Aso; Jordi Dorca; Debora Gil; Antoni Rosell |
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Title |
Ultrathin Bronchoscopy with and without Virtual Bronchoscopic Navigation: Influence of Segmentation on Diagnostic Yield |
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Journal Article |
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Year |
2019 |
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Respiration |
Abbreviated Journal |
RES |
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Volume |
97 |
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3 |
Pages |
252-258 |
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Keywords |
Lung cancer; Peripheral lung lesion; Diagnosis; Bronchoscopy; Ultrathin bronchoscopy; Virtual bronchoscopic navigation |
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Background: Bronchoscopy is a safe technique for diagnosing peripheral pulmonary lesions (PPLs), and virtual bronchoscopic navigation (VBN) helps guide the bronchoscope to PPLs. Objectives: We aimed to compare the diagnostic yield of VBN-guided and unguided ultrathin bronchoscopy (UTB) and explore clinical and technical factors associated with better results. We developed a diagnostic algorithm for deciding whether to use VBN to reach PPLs or choose an alternative diagnostic approach. Methods: We compared diagnostic yield between VBN-UTB (prospective cases) and unguided UTB (historical controls) and analyzed the VBN-UTB subgroup to identify clinical and technical variables that could predict the success of VBN-UTB. Results: Fifty-five cases and 110 controls were included. The overall diagnostic yield did not differ between the VBN-guided and unguided arms (47 and 40%, respectively; p = 0.354). Although the yield was slightly higher for PPLs ≤20 mm in the VBN-UTB arm, the difference was not significant (p = 0.069). No other clinical characteristics were associated with a higher yield in a subgroup analysis, but an 85% diagnostic yield was observed when segmentation was optimal and the PPL was endobronchial (vs. 30% when segmentation was suboptimal and 20% when segmentation was optimal but the PPL was extrabronchial). Conclusions: VBN-guided UTB is not superior to unguided UTB. A greater impact of VBN-guided over unguided UTB is highly dependent on both segmentation quality and an endobronchial location of the PPL. Segmentation quality should be considered before starting a procedure, when an alternative technique that may improve yield can be chosen, saving time and resources. |
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IAM; 600.145; 600.139 |
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Admin @ si @ DML2019 |
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3134 |
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Author |
Guillermo Torres; Sonia Baeza; Carles Sanchez; Ignasi Guasch; Antoni Rosell; Debora Gil |
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Title |
An Intelligent Radiomic Approach for Lung Cancer Screening |
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Journal Article |
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2022 |
Publication |
Applied Sciences |
Abbreviated Journal |
APPLSCI |
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12 |
Issue |
3 |
Pages |
1568 |
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Lung cancer; Early diagnosis; Screening; Neural networks; Image embedding; Architecture optimization |
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The efficiency of lung cancer screening for reducing mortality is hindered by the high rate of false positives. Artificial intelligence applied to radiomics could help to early discard benign cases from the analysis of CT scans. The available amount of data and the fact that benign cases are a minority, constitutes a main challenge for the successful use of state of the art methods (like deep learning), which can be biased, over-fitted and lack of clinical reproducibility. We present an hybrid approach combining the potential of radiomic features to characterize nodules in CT scans and the generalization of the feed forward networks. In order to obtain maximal reproducibility with minimal training data, we propose an embedding of nodules based on the statistical significance of radiomic features for malignancy detection. This representation space of lesions is the input to a feed
forward network, which architecture and hyperparameters are optimized using own-defined metrics of the diagnostic power of the whole system. Results of the best model on an independent set of patients achieve 100% of sensitivity and 83% of specificity (AUC = 0.94) for malignancy detection. |
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Jan 2022 |
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IAM; 600.139; 600.145 |
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Admin @ si @ TBS2022 |
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3699 |
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Author |
Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil |
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Title |
Stable Anatomical Structure Tracking for video-bronchoscopy Navigation |
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Conference Article |
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2016 |
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19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops |
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Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking |
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Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at di erent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations. |
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Athens; Greece; October 2016 |
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MICCAIW |
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IAM; 600.075 |
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no |
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Admin @ si @ LSB2016b |
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2857 |
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Author |
Carles Sanchez; Jorge Bernal; Debora Gil; F. Javier Sanchez |
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Title |
On-line lumen centre detection in gastrointestinal and respiratory endoscopy |
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Conference Article |
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2013 |
Publication |
Second International Workshop Clinical Image-Based Procedures |
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8361 |
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31-38 |
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Lumen centre detection; Bronchoscopy; Colonoscopy |
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We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %). |
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Nagoya; Japan; September 2013 |
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Springer International Publishing |
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Erdt, Marius and Linguraru, Marius George and Oyarzun Laura, Cristina and Shekhar, Raj and Wesarg, Stefan and González Ballester, Miguel Angel and Drechsler, Klaus |
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978-3-319-05665-4 |
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800 |
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CLIP |
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MV; IAM; 600.047; 600.044; 600.060 |
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Admin @ si @ SBG2013 |
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2302 |
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Onur Ferhat; Fernando Vilariño |
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A Cheap Portable Eye-Tracker Solution for Common Setups |
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Conference Article |
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2013 |
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17th European Conference on Eye Movements |
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Low cost; eye-tracker; software; webcam; Raspberry Pi |
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We analyze the feasibility of a cheap eye-tracker where the hardware consists of a single webcam and a Raspberry Pi device. Our aim is to discover the limits of such a system and to see whether it provides an acceptable performance. We base our work on the open source Opengazer (Zielinski, 2013) and we propose several improvements to create a robust, real-time system. After assessing the accuracy of our eye-tracker in elaborated experiments involving 18 subjects under 4 different system setups, we developed a simple game to see how it performs in practice and we also installed it on a Raspberry Pi to create a portable stand-alone eye-tracker which achieves 1.62° horizontal accuracy with 3 fps refresh rate for a building cost of 70 Euros. |
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Lund; Sweden; August 2013 |
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ECEM |
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MV;SIAI |
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Admin @ si @ FeV2013 |
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2374 |
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Aura Hernandez-Sabate; David Rotger; Debora Gil |
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Image-based ECG sampling of IVUS sequences |
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2008 |
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Proc. IEEE Ultrasonics Symp. IUS 2008 |
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Longitudinal Motion; Image-based ECG-gating; Fourier analysis |
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Longitudinal motion artifacts in IntraVascular UltraSound (IVUS) sequences hinders a properly 3D reconstruction and vessel measurements. Most of current techniques base on the ECG signal to obtain a gated pullback without the longitudinal artifact by using a specific hardware or the ECG signal itself. The potential of IVUS images processing for phase retrieval still remains little explored. In this paper, we present a fast forward image-based algorithm to approach ECG sampling. Inspired on the fact that maximum and minimum lumen areas are related to end-systole and end-diastole, our cardiac phase retrieval is based on the analysis of tissue density of mass along the sequence. The comparison between automatic and manual phase retrieval (0.07 ± 0.07 mm. of error) encourages a deep validation contrasting with ECG signals. |
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Beijing (China) |
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IAM @ iam @ HRG2008 |
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A.Kesidis; Dimosthenis Karatzas |
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Logo and Trademark Recognition |
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2014 |
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Handbook of Document Image Processing and Recognition |
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D |
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591-646 |
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Logo recognition; Logo removal; Logo spotting; Trademark registration; Trademark retrieval systems |
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The importance of logos and trademarks in nowadays society is indisputable, variably seen under a positive light as a valuable service for consumers or a negative one as a catalyst of ever-increasing consumerism. This chapter discusses the technical approaches for enabling machines to work with logos, looking into the latest methodologies for logo detection, localization, representation, recognition, retrieval, and spotting in a variety of media. This analysis is presented in the context of three different applications covering the complete depth and breadth of state of the art techniques. These are trademark retrieval systems, logo recognition in document images, and logo detection and removal in images and videos. This chapter, due to the very nature of logos and trademarks, brings together various facets of document image analysis spanning graphical and textual content, while it links document image analysis to other computer vision domains, especially when it comes to the analysis of real-scene videos and images. |
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Springer London |
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D. Doermann; K. Tombre |
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978-0-85729-858-4 |
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DAG; 600.077 |
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Admin @ si @ KeK2014 |
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2425 |
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Mohammad Ali Bagheri; Qigang Gao; Sergio Escalera |
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Logo recognition Based on the Dempster-Shafer Fusion of Multiple Classifiers |
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Conference Article |
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2013 |
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26th Canadian Conference on Artificial Intelligence |
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7884 |
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1-12 |
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Logo recognition; ensemble classification; Dempster-Shafer fusion; Zernike moments; generic Fourier descriptor; shape signature |
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Abstract |
Best paper award
The performance of different feature extraction and shape description methods in trademark image recognition systems have been studied by several researchers. However, the potential improvement in classification through feature fusion by ensemble-based methods has remained unattended. In this work, we evaluate the performance of an ensemble of three classifiers, each trained on different feature sets. Three promising shape description techniques, including Zernike moments, generic Fourier descriptors, and shape signature are used to extract informative features from logo images, and each set of features is fed into an individual classifier. In order to reduce recognition error, a powerful combination strategy based on the Dempster-Shafer theory is utilized to fuse the three classifiers trained on different sources of information. This combination strategy can effectively make use of diversity of base learners generated with different set of features. The recognition results of the individual classifiers are compared with those obtained from fusing the classifiers’ output, showing significant performance improvements of the proposed methodology. |
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Canada; May 2013 |
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Springer Berlin Heidelberg |
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ISSN |
0302-9743 |
ISBN |
978-3-642-38456-1 |
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Conference |
AI |
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Notes |
HuPBA;MILAB |
Approved |
no |
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Call Number |
Admin @ si @ BGE2013b |
Serial |
2249 |
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Author |
M. Altillawi; S. Li; S.M. Prakhya; Z. Liu; Joan Serrat |
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Title |
Implicit Learning of Scene Geometry From Poses for Global Localization |
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Journal Article |
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Year |
2024 |
Publication |
IEEE Robotics and Automation Letters |
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ROBOTAUTOMLET |
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Volume |
9 |
Issue |
2 |
Pages |
955-962 |
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Keywords |
Localization; Localization and mapping; Deep learning for visual perception; Visual learning |
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Abstract |
Global visual localization estimates the absolute pose of a camera using a single image, in a previously mapped area. Obtaining the pose from a single image enables many robotics and augmented/virtual reality applications. Inspired by latest advances in deep learning, many existing approaches directly learn and regress 6 DoF pose from an input image. However, these methods do not fully utilize the underlying scene geometry for pose regression. The challenge in monocular relocalization is the minimal availability of supervised training data, which is just the corresponding 6 DoF poses of the images. In this letter, we propose to utilize these minimal available labels (i.e., poses) to learn the underlying 3D geometry of the scene and use the geometry to estimate the 6 DoF camera pose. We present a learning method that uses these pose labels and rigid alignment to learn two 3D geometric representations ( X, Y, Z coordinates ) of the scene, one in camera coordinate frame and the other in global coordinate frame. Given a single image, it estimates these two 3D scene representations, which are then aligned to estimate a pose that matches the pose label. This formulation allows for the active inclusion of additional learning constraints to minimize 3D alignment errors between the two 3D scene representations, and 2D re-projection errors between the 3D global scene representation and 2D image pixels, resulting in improved localization accuracy. During inference, our model estimates the 3D scene geometry in camera and global frames and aligns them rigidly to obtain pose in real-time. We evaluate our work on three common visual localization datasets, conduct ablation studies, and show that our method exceeds state-of-the-art regression methods' pose accuracy on all datasets. |
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2377-3766 |
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ADAS |
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no |
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Call Number |
Admin @ si @ |
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3857 |
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Author |
Pedro Martins; Paulo Carvalho; Carlo Gatta |
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Title |
On the completeness of feature-driven maximally stable extremal regions |
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Journal Article |
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Year |
2016 |
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Pattern Recognition Letters |
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PRL |
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74 |
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9-16 |
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Keywords |
Local features; Completeness; Maximally Stable Extremal Regions |
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By definition, local image features provide a compact representation of the image in which most of the image information is preserved. This capability offered by local features has been overlooked, despite being relevant in many application scenarios. In this paper, we analyze and discuss the performance of feature-driven Maximally Stable Extremal Regions (MSER) in terms of the coverage of informative image parts (completeness). This type of features results from an MSER extraction on saliency maps in which features related to objects boundaries or even symmetry axes are highlighted. These maps are intended to be suitable domains for MSER detection, allowing this detector to provide a better coverage of informative image parts. Our experimental results, which were based on a large-scale evaluation, show that feature-driven MSER have relatively high completeness values and provide more complete sets than a traditional MSER detection even when sets of similar cardinality are considered. |
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Elsevier B.V. |
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0167-8655 |
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Notes |
LAMP;MILAB; |
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no |
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Call Number |
Admin @ si @ MCG2016 |
Serial |
2748 |
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Author |
Marçal Rusiñol; J. Chazalon; Jean-Marc Ogier |
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Title |
Filtrage de descripteurs locaux pour l'amélioration de la détection de documents |
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Conference Article |
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Year |
2016 |
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Colloque International Francophone sur l'Écrit et le Document |
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Local descriptors; mobile capture; document matching; keypoint selection |
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In this paper we propose an effective method aimed at reducing the amount of local descriptors to be indexed in a document matching framework.In an off-line training stage, the matching between the model document and incoming images is computed retaining the local descriptors from the model that steadily produce good matches. We have evaluated this approach by using the ICDAR2015 SmartDOC dataset containing near 25000 images from documents to be captured by a mobile device. We have tested the performance of this filtering step by using ORB and SIFT local detectors and descriptors. The results show an important gain both in quality of the final matching as well as in time and space requirements. |
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Toulouse; France; March 2016 |
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CIFED |
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Notes |
DAG; 600.084; 600.077 |
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no |
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Call Number |
Admin @ si @ RCO2016 |
Serial |
2755 |
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