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Carme Julia; Angel Sappa; Felipe Lumbreras; Joan Serrat; Antonio Lopez |
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Title |
Rank Estimation in 3D Multibody Motion Segmentation |
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Journal Article |
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2008 |
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Electronic Letters |
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44 |
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4 |
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279-280 |
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A novel technique for rank estimation in 3D multibody motion segmentation is proposed. It is based on the study of the frequency spectra of moving rigid objects and does not use or assume a prior knowledge of the objects contained in the scene (i.e. number of objects and motion). The significance of rank estimation on multibody motion segmentation results is shown by using two motion segmentation algorithms over both synthetic and real data. |
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ADAS @ adas @ JSL2008a |
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939 |
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Jean-Pascal Jacob; Mariella Dimiccoli; Lionel Moisan |
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Title |
Active skeleton for bacteria modeling |
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Journal Article |
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2016 |
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Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization |
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CMBBE |
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5 |
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4 |
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274-286 |
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Bacteria modelling; medial axis; active contours; active skeleton; shape contraints |
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The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modeling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness, orientation), an improved boundary accuracy in noisy images, and a natural bacteria-centered coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimizing an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modeling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at this http URL |
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MILAB |
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Admin @ si @ JDM2016 |
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2711 |
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Jean-Pascal Jacob; Mariella Dimiccoli; L. Moisan |
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Title |
Active skeleton for bacteria modelling |
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Journal Article |
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2017 |
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Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization |
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CMBBE |
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5 |
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4 |
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274-286 |
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The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modelling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness and orientation), an improved boundary accuracy in noisy images and a natural bacteria-centred coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimising an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modelling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at http://fluobactracker.inrialpes.fr. |
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Taylor & Francis Group |
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MILAB; |
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Admin @ si @JDM2017 |
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2784 |
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Francesc Carreras; Jaume Garcia; Debora Gil; Sandra Pujadas; Chi ho Lion; R.Suarez-Arias; R.Leta; Xavier Alomar; Manuel Ballester; Guillem Pons-Llados |
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Left ventricular torsion and longitudinal shortening: two fundamental components of myocardial mechanics assessed by tagged cine-MRI in normal subjects |
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Journal Article |
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2012 |
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International Journal of Cardiovascular Imaging |
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IJCI |
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28 |
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2 |
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273-284 |
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Magnetic resonance imaging (MRI); Tagging MRI; Cardiac mechanics; Ventricular torsion |
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Cardiac magnetic resonance imaging (Cardiac MRI) has become a gold standard diagnostic technique for the assessment of cardiac mechanics, allowing the non-invasive calculation of left ventric- ular long axis longitudinal shortening (LVLS) and absolute myocardial torsion (AMT) between basal and apical left ventricular slices, a movement directly related to the helicoidal anatomic disposition of the myocardial fibers. The aim of this study is to determine AMT and LVLS behaviour and normal values from a group of healthy subjects. A group of 21 healthy volunteers (15 males) (age: 23–55 y.o., mean:30.7 ± 7.5) were prospectively included in an obser- vational study by Cardiac MRI. Left ventricular rotation (degrees) was calculated by custom-made software (Harmonic Phase Flow) in consecutive LV short axis planes tagged cine-MRI sequences. AMT was determined from the difference between basal and apical planes LV rotations. LVLS (%) was determined from the LV longitudinal and horizontal axis cine-MRI images. All the 21 cases studied were interpretable, although in three cases the value of the LV apical rotation could not be determined. The mean rotation of the basal and apical planes at end-systole were -3.71° ± 0.84° and 6.73° ± 1.69° (n:18) respectively, resulting in a LV mean AMT of 10.48° ± 1.63° (n:18). End-systolic mean LVLS was 19.07 ± 2.71%. Cardiac MRI allows for the calculation of AMT and LVLS, fundamental functional components of the ventricular twist mechanics conditioned, in turn, by the anatomical helical layout of the myocardial fibers. These values provide complementary information about systolic ventricular function in relation to the traditional parameters used in daily practice. |
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Springer Netherlands |
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1569-5794 |
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IAM; |
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IAM @ iam @ CGG2012 |
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1496 |
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Author |
David Berga; Xavier Otazu |
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Title |
Modeling Bottom-Up and Top-Down Attention with a Neurodynamic Model of V1 |
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Journal Article |
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2020 |
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Neurocomputing |
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NEUCOM |
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417 |
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270-289 |
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Previous studies suggested that lateral interactions of V1 cells are responsible, among other visual effects, of bottom-up visual attention (alternatively named visual salience or saliency). Our objective is to mimic these connections with a neurodynamic network of firing-rate neurons in order to predict visual attention. Early visual subcortical processes (i.e. retinal and thalamic) are functionally simulated. An implementation of the cortical magnification function is included to define the retinotopical projections towards V1, processing neuronal activity for each distinct view during scene observation. Novel computational definitions of top-down inhibition (in terms of inhibition of return, oculomotor and selection mechanisms), are also proposed to predict attention in Free-Viewing and Visual Search tasks. Results show that our model outpeforms other biologically inspired models of saliency prediction while predicting visual saccade sequences with the same model. We also show how temporal and spatial characteristics of saccade amplitude and inhibition of return can improve prediction of saccades, as well as how distinct search strategies (in terms of feature-selective or category-specific inhibition) can predict attention at distinct image contexts. |
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NEUROBIT |
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Admin @ si @ BeO2020c |
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3444 |
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Author |
Sanket Biswas; Pau Riba; Josep Llados; Umapada Pal |
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Title |
Beyond Document Object Detection: Instance-Level Segmentation of Complex Layouts |
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Journal Article |
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2021 |
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International Journal on Document Analysis and Recognition |
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IJDAR |
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24 |
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Information extraction is a fundamental task of many business intelligence services that entail massive document processing. Understanding a document page structure in terms of its layout provides contextual support which is helpful in the semantic interpretation of the document terms. In this paper, inspired by the progress of deep learning methodologies applied to the task of object recognition, we transfer these models to the specific case of document object detection, reformulating the traditional problem of document layout analysis. Moreover, we importantly contribute to prior arts by defining the task of instance segmentation on the document image domain. An instance segmentation paradigm is especially important in complex layouts whose contents should interact for the proper rendering of the page, i.e., the proper text wrapping around an image. Finally, we provide an extensive evaluation, both qualitative and quantitative, that demonstrates the superior performance of the proposed methodology over the current state of the art. |
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DAG; 600.121; 600.140; 110.312 |
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Admin @ si @ BRL2021b |
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3574 |
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C. Butakoff; Simone Balocco; F.M. Sukno; C. Hoogendoorn; C. Tobon-Gomez; G. Avegliano; A.F. Frangi |
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Title |
Left-ventricular Epi- and Endocardium Extraction from 3D Ultrasound Images Using an Automatically Constructed 3D ASM |
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Journal Article |
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2016 |
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Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization |
Abbreviated Journal |
CMBBE |
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4 |
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5 |
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ASM; cardiac segmentation; statistical model; shape model; 3D ultrasound; cardiac segmentation |
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In this paper, we propose an automatic method for constructing an active shape model (ASM) to segment the complete cardiac left ventricle in 3D ultrasound (3DUS) images, which avoids costly manual landmarking. The automatic construction of the ASM has already been addressed in the literature; however, the direct application of these methods to 3DUS is hampered by a high level of noise and artefacts. Therefore, we propose to construct the ASM by fusing the multidetector computed tomography data, to learn the shape, with the artificially generated 3DUS, in order to learn the neighbourhood of the boundaries. Our artificial images were generated by two approaches: a faster one that does not take into account the geometry of the transducer, and a more comprehensive one, implemented in Field II toolbox. The segmentation accuracy of our ASM was evaluated on 20 patients with left-ventricular asynchrony, demonstrating plausibility of the approach. |
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2168-1163 |
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MILAB |
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no |
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Admin @ si @ BBS2016 |
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2449 |
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Author |
Maria Vanrell; Jordi Vitria; Xavier Roca |
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A multidimensional scaling approach to explore the behavior of a texture perception algorithm. |
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Journal Article |
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1997 |
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Machine Vision and Applications |
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9 |
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262–271 |
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OR;ISE;CIC;MV |
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BCNPCL @ bcnpcl @ VVR1997 |
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35 |
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Cristina Sanchez Montes; F. Javier Sanchez; Jorge Bernal; Henry Cordova; Maria Lopez Ceron; Miriam Cuatrecasas; Cristina Rodriguez de Miguel; Ana Garcia Rodriguez; Rodrigo Garces Duran; Maria Pellise; Josep Llach; Gloria Fernandez Esparrach |
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Computer-aided Prediction of Polyp Histology on White-Light Colonoscopy using Surface Pattern Analysis |
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Journal Article |
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2019 |
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Endoscopy |
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END |
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51 |
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3 |
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261-265 |
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Background and study aims: To evaluate a new computational histology prediction system based on colorectal polyp textural surface patterns using high definition white light images.
Patients and methods: Textural elements (textons) were characterized according to their contrast with respect to the surface, shape and number of bifurcations, assuming that dysplastic polyps are associated with highly contrasted, large tubular patterns with some degree of bifurcation. Computer-aided diagnosis (CAD) was compared with pathological diagnosis and the diagnosis by the endoscopists using Kudo and NICE classification.
Results: Images of 225 polyps were evaluated (142 dysplastic and 83 non-dysplastic). CAD system correctly classified 205 (91.1%) polyps, 131/142 (92.3%) dysplastic and 74/83 (89.2%) non-dysplastic. For the subgroup of 100 diminutive (<5 mm) polyps, CAD correctly classified 87 (87%) polyps, 43/50 (86%) dysplastic and 44/50 (88%) non-dysplastic. There were not statistically significant differences in polyp histology prediction based on CAD system and on endoscopist assessment.
Conclusion: A computer vision system based on the characterization of the polyp surface in the white light accurately predicts colorectal polyp histology. |
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MV; 600.096; 600.119; 600.075 |
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Admin @ si @ SSB2019 |
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3164 |
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Marta Diez-Ferrer; Arturo Morales; Rosa Lopez Lisbona; Noelia Cubero; Cristian Tebe; Susana Padrones; Samantha Aso; Jordi Dorca; Debora Gil; Antoni Rosell |
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Ultrathin Bronchoscopy with and without Virtual Bronchoscopic Navigation: Influence of Segmentation on Diagnostic Yield |
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Journal Article |
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2019 |
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Respiration |
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RES |
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97 |
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3 |
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252-258 |
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Lung cancer; Peripheral lung lesion; Diagnosis; Bronchoscopy; Ultrathin bronchoscopy; Virtual bronchoscopic navigation |
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Background: Bronchoscopy is a safe technique for diagnosing peripheral pulmonary lesions (PPLs), and virtual bronchoscopic navigation (VBN) helps guide the bronchoscope to PPLs. Objectives: We aimed to compare the diagnostic yield of VBN-guided and unguided ultrathin bronchoscopy (UTB) and explore clinical and technical factors associated with better results. We developed a diagnostic algorithm for deciding whether to use VBN to reach PPLs or choose an alternative diagnostic approach. Methods: We compared diagnostic yield between VBN-UTB (prospective cases) and unguided UTB (historical controls) and analyzed the VBN-UTB subgroup to identify clinical and technical variables that could predict the success of VBN-UTB. Results: Fifty-five cases and 110 controls were included. The overall diagnostic yield did not differ between the VBN-guided and unguided arms (47 and 40%, respectively; p = 0.354). Although the yield was slightly higher for PPLs ≤20 mm in the VBN-UTB arm, the difference was not significant (p = 0.069). No other clinical characteristics were associated with a higher yield in a subgroup analysis, but an 85% diagnostic yield was observed when segmentation was optimal and the PPL was endobronchial (vs. 30% when segmentation was suboptimal and 20% when segmentation was optimal but the PPL was extrabronchial). Conclusions: VBN-guided UTB is not superior to unguided UTB. A greater impact of VBN-guided over unguided UTB is highly dependent on both segmentation quality and an endobronchial location of the PPL. Segmentation quality should be considered before starting a procedure, when an alternative technique that may improve yield can be chosen, saving time and resources. |
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IAM; 600.145; 600.139 |
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Admin @ si @ DML2019 |
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3134 |
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Eloi Puertas; Sergio Escalera; Oriol Pujol |
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Title |
Generalized Multi-scale Stacked Sequential Learning for Multi-class Classification |
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Journal Article |
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2015 |
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Pattern Analysis and Applications |
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PAA |
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18 |
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2 |
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247-261 |
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Stacked sequential learning; Multi-scale; Error-correct output codes (ECOC); Contextual classification |
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In many classification problems, neighbor data labels have inherent sequential relationships. Sequential learning algorithms take benefit of these relationships in order to improve generalization. In this paper, we revise the multi-scale sequential learning approach (MSSL) for applying it in the multi-class case (MMSSL). We introduce the error-correcting output codesframework in the MSSL classifiers and propose a formulation for calculating confidence maps from the margins of the base classifiers. In addition, we propose a MMSSL compression approach which reduces the number of features in the extended data set without a loss in performance. The proposed methods are tested on several databases, showing significant performance improvement compared to classical approaches. |
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1433-7541 |
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HuPBA;MILAB |
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Admin @ si @ PEP2013 |
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2251 |
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Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva |
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Title |
Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions |
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Journal Article |
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Year |
2010 |
Publication |
IEEE Transactions on Medical Imaging |
Abbreviated Journal |
TMI |
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29 |
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2 |
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246-259 |
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Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions. |
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IEEE |
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0278-0062 |
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800 |
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MILAB;MV;OR;SIAI |
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BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 |
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1281 |
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Author |
Alicia Fornes; Josep Llados; Gemma Sanchez; Xavier Otazu; Horst Bunke |
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Title |
A Combination of Features for Symbol-Independent Writer Identification in Old Music Scores |
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Journal Article |
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Year |
2010 |
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International Journal on Document Analysis and Recognition |
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IJDAR |
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13 |
Issue |
4 |
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243-259 |
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The aim of writer identification is determining the writer of a piece of handwriting from a set of writers. In this paper, we present an architecture for writer identification in old handwritten music scores. Even though an important amount of music compositions contain handwritten text, the aim of our work is to use only music notation to determine the author. The main contribution is therefore the use of features extracted from graphical alphabets. Our proposal consists in combining the identification results of two different approaches, based on line and textural features. The steps of the ensemble architecture are the following. First of all, the music sheet is preprocessed for removing the staff lines. Then, music lines and texture images are generated for computing line features and textural features. Finally, the classification results are combined for identifying the writer. The proposed method has been tested on a database of old music scores from the seventeenth to nineteenth centuries, achieving a recognition rate of about 92% with 20 writers. |
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Springer-Verlag |
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1433-2833 |
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DAG; CAT;CIC |
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FLS2010b |
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1319 |
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Author |
Alicia Fornes; Anjan Dutta; Albert Gordo; Josep Llados |
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Title |
CVC-MUSCIMA: A Ground-Truth of Handwritten Music Score Images for Writer Identification and Staff Removal |
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Journal Article |
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Year |
2012 |
Publication |
International Journal on Document Analysis and Recognition |
Abbreviated Journal |
IJDAR |
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15 |
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3 |
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243-251 |
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Music scores; Handwritten documents; Writer identification; Staff removal; Performance evaluation; Graphics recognition; Ground truths |
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0,405JCR
The analysis of music scores has been an active research field in the last decades. However, there are no publicly available databases of handwritten music scores for the research community. In this paper we present the CVC-MUSCIMA database and ground-truth of handwritten music score images. The dataset consists of 1,000 music sheets written by 50 different musicians. It has been especially designed for writer identification and staff removal tasks. In addition to the description of the dataset, ground-truth, partitioning and evaluation metrics, we also provide some base-line results for easing the comparison between different approaches. |
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1433-2833 |
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DAG |
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Admin @ si @ FDG2012 |
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2129 |
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Author |
Lluis Gomez; Ali Furkan Biten; Ruben Tito; Andres Mafla; Marçal Rusiñol; Ernest Valveny; Dimosthenis Karatzas |
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Title |
Multimodal grid features and cell pointers for scene text visual question answering |
Type |
Journal Article |
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Year |
2021 |
Publication |
Pattern Recognition Letters |
Abbreviated Journal |
PRL |
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Volume |
150 |
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242-249 |
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This paper presents a new model for the task of scene text visual question answering. In this task questions about a given image can only be answered by reading and understanding scene text. Current state of the art models for this task make use of a dual attention mechanism in which one attention module attends to visual features while the other attends to textual features. A possible issue with this is that it makes difficult for the model to reason jointly about both modalities. To fix this problem we propose a new model that is based on an single attention mechanism that attends to multi-modal features conditioned to the question. The output weights of this attention module over a grid of multi-modal spatial features are interpreted as the probability that a certain spatial location of the image contains the answer text to the given question. Our experiments demonstrate competitive performance in two standard datasets with a model that is faster than previous methods at inference time. Furthermore, we also provide a novel analysis of the ST-VQA dataset based on a human performance study. Supplementary material, code, and data is made available through this link. |
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DAG; 600.084; 600.121 |
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Admin @ si @ GBT2021 |
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3620 |
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