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Author Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva edit  doi
openurl 
  Title ROC curves and video analysis optimization in intestinal capsule endoscopy Type Journal Article
  Year 2006 Publication Pattern Recognition Letters Abbreviated Journal PRL  
  Volume 27 Issue 8 Pages 875–881  
  Keywords ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy  
  Abstract Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MILAB;MV;SIAI Approved no  
  Call Number BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006 Serial 647  
Permanent link to this record
 

 
Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva edit   pdf
openurl 
  Title Cascade analysis for intestinal contraction detection Type Conference Article
  Year 2006 Publication 20th International Congress and exhibition Computer Assisted Radiology and Surgery Abbreviated Journal  
  Volume Issue Pages 9-10  
  Keywords intestine video analysis, anisotropic features, support vector machine, cascade of classifiers  
  Abstract In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.  
  Address Osaka (Japan)  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference CARS  
  Notes MV;OR;MILAB;SIAI Approved no  
  Call Number BCNPCL @ bcnpcl @ VSV2006a; IAM @ iam @ VSV2006h Serial 726  
Permanent link to this record
 

 
Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva edit   pdf
doi  isbn
openurl 
  Title Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy Type Conference Article
  Year 2006 Publication 18th International Conference on Pattern Recognition Abbreviated Journal  
  Volume 4 Issue Pages 719-722  
  Keywords Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization  
  Abstract Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found.  
  Address Hong Kong  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1051-4651 ISBN 0-7695-2521-0 Medium  
  Area 800 Expedition Conference ICPR  
  Notes MV;OR;MILAB;SIAI Approved no  
  Call Number BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g Serial 727  
Permanent link to this record
 

 
Author Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva edit   pdf
doi  openurl
  Title Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions Type Journal Article
  Year 2010 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI  
  Volume 29 Issue 2 Pages 246-259  
  Keywords  
  Abstract Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions.  
  Address  
  Corporate Author IEEE Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0278-0062 ISBN Medium  
  Area 800 Expedition Conference  
  Notes MILAB;MV;OR;SIAI Approved no  
  Call Number BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 Serial 1281  
Permanent link to this record
 

 
Author Jorge Bernal; Fernando Vilariño; F. Javier Sanchez edit   pdf
openurl 
  Title Feature Detectors and Feature Descriptors: Where We Are Now Type Report
  Year 2010 Publication CVC Technical Report Abbreviated Journal  
  Volume 154 Issue Pages  
  Keywords  
  Abstract Feature Detection and Feature Description are clearly nowadays topics. Many Computer Vision applications rely on the use of several of these techniques in order to extract the most significant aspects of an image so they can help in some tasks such as image retrieval, image registration, object recognition, object categorization and texture classification, among others. In this paper we define what Feature Detection and Description are and then we present an extensive collection of several methods in order to show the different techniques that are being used right now. The aim of this report is to provide a glimpse of what is being used currently in these fields and to serve as a starting point for future endeavours.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MV;SIAI Approved no  
  Call Number Admin @ si @ BVS2010; IAM @ iam @ BVS2010 Serial 1348  
Permanent link to this record
 

 
Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
openurl 
  Title Reduction of Pattern Search Area in Colonoscopy Images by Merging Non-Informative Regions Type Conference Article
  Year 2010 Publication 28th Congreso Anual de la Sociedad Española de Ingeniería Biomédica Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract One of the first usual steps in pattern recognition schemas is image segmentation, in order to reduce the dimensionality of the problem and manage smaller quantity of data. In our case as we are pursuing real-time colon cancer polyp detection, this step is crucial. In this paper we present a non-informative region estimation algorithm that will let us discard some parts of the image where we will not expect to find colon cancer polyps. The performance of our approach will be measured in terms of both non-informative areas elimination and polyps’ areas preserving. The results obtained show the importance of having correct non- informative region estimation in order to fasten the whole recognition process.  
  Address Madrid (Spain)  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference CASEIB  
  Notes MV;SIAI Approved no  
  Call Number Admin @ si @ BSV2010 Serial 1469  
Permanent link to this record
 

 
Author Jorge Bernal edit   pdf
openurl 
  Title Use of Projection and Back-projection Methods in Bidimensional Computed Tomography Image Reconstruction Type Report
  Year 2009 Publication CVC Tecnical Report Abbreviated Journal  
  Volume 141 Issue Pages  
  Keywords Projection, Back-projection, CT scan, Euclidean geometry, Radon transform  
  Abstract One of the biggest drawbacks related to the use of CT scanners is the cost (in memory and in time) associated. In this project many methods to simulate their functioning, but in a more feasible way (taking an industrial point of view), will be studied.
The main group of techniques that are being used are the one entitled as ’back-projection’. The concept behind is to simulate the X ray emission in CT scans by lines that cross with the image we want to reconstruct.
In the first part of this document euclidean geometry is used to face the tasks of projec- tion and back-projection. After analysing the results achieved it has been proved that this approach does not lead to a fully perfect reconstruction (and also has some other problems related to running time and memory cost). Because of this in the second part of the document ’Filtered Back-projection’ method is introduced in order to improve the results.
Filtered Back-projection methods rely on mathematical transforms (Fourier, Radon) in order to provide more accurate results that can be obtained in much less time. The main cause of this better results is the use of a filtering process before the back-projection in order to avoid high frequency-caused errors.
As a result of this project two different implementations (one for each approach) had been implemented in order to compare their performance.
 
  Address  
  Corporate Author Computer Vision Center Thesis Master's thesis  
  Publisher Place of Publication Barcelona, Spain Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MV; Approved no  
  Call Number IAM @ iam @ Ber2009 Serial 1693  
Permanent link to this record
 

 
Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
url  doi
openurl 
  Title Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy Type Conference Article
  Year 2011 Publication In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging Abbreviated Journal  
  Volume 6668 Issue Pages 76-83  
  Keywords  
  Abstract This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information.  
  Address Toronto, Canada  
  Corporate Author Thesis  
  Publisher Springer Link Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference ABI  
  Notes MV;SIAI Approved no  
  Call Number IAM @ iam @ BSV2011d Serial 1698  
Permanent link to this record
 

 
Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
url  isbn
openurl 
  Title Depth of Valleys Accumulation Algorithm for Object Detection Type Conference Article
  Year 2011 Publication 14th Congrès Català en Intel·ligencia Artificial Abbreviated Journal  
  Volume 1 Issue 1 Pages 71-80  
  Keywords Object Recognition, Object Region Identification, Image Analysis, Image Processing  
  Abstract This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.  
  Address Lleida  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN 978-1-60750-841-0 Medium  
  Area 800 Expedition Conference CCIA  
  Notes MV;SIAI Approved no  
  Call Number IAM @ iam @ BSV2011b Serial 1699  
Permanent link to this record
 

 
Author Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada edit   pdf
url  openurl
  Title Method for automatic classification of in vivo images Type Patent
  Year 2010 Publication US 2010/0046816 Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract A method for automatically detecting a post-duodenal boundary in an image stream of the gastrointestinal (GI) tract. The image stream is sampled to obtain a reduced set of images for processing. The reduced set of images is filtered to remove non-valid frames or non-valid portions of frames, thereby generating a filtered set of valid images. A polar representation of the valid images is generated. Textural features of the polar representation are processed to detect the post-duodenal boundary of the GI tract.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MV;OR;MILAB;SIAI Approved no  
  Call Number IAM @ iam @ VSR2010 Serial 1702  
Permanent link to this record
 

 
Author Gerard Lacey; Fernando Vilariño edit   pdf
url  openurl
  Title Endoscopy system with motion sensors Type Patent
  Year 2011 Publication US 2011/0032347 A1 Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract An endoscopy system (1) comprises an endoscope (2) with a camera (3) at its tip. The endoscope extends through an endoscope guide (4) for guiding movement of the endoscope and for measurement of its movement as it enters the body. The guide (4) comprises a generally conical body (5) having a through passage (105) through which the endoscope (2) extends. A motion sensor comprises an optical transmitter (7) and a detector (8) mounted alongside the passage (105) to measure the insertion-withdrawal linear motion and also rotation of the endoscope by the endoscopist's hand. The system (1) also comprises a flexure controller (10) having wheels operated by the endoscopist. The camera (3), the motion sensor (7/8), and the flexure controller (10) are all connected to a processor (11) which feeds a display.  
  Address Jacobson Holman PPLC; 400 Seventh Street, N.W. Suite 600; Whashington DC 20004 DC  
  Corporate Author USPTO Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MV;SIAI Approved no  
  Call Number IAM @ iam @ LaV2011 Serial 1703  
Permanent link to this record
 

 
Author Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada edit   pdf
url  openurl
  Title Device, system and method for measurement and analysis of contractile activity Type Patent
  Year 2009 Publication US 2009/0202117 A1 Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract A method and system for determining intestinal dysfunction condition are provided by classifying and analyzing image frames captured in-vivo. The method and system also relate to the detection of contractile activity in intestinal tracts, to automatic detection of video image frames taken in the gastrointestinal tract including contractile activity, and more particularly to measurement and analysis of contractile activity of the GI tract based on image intensity of in vivo image data.  
  Address Pearl Cohen Zedek Latzer  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area 800 Expedition Conference  
  Notes MV;OR;MILAB;SIAI Approved no  
  Call Number IAM @ iam @ VSR2009 Serial 1704  
Permanent link to this record
 

 
Author Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil edit   pdf
url  doi
isbn  openurl
  Title An illumination model of the trachea appearance in videobronchoscopy images Type Book Chapter
  Year 2012 Publication Image Analysis and Recognition Abbreviated Journal LNCS  
  Volume 7325 Issue Pages 313-320  
  Keywords Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation  
  Abstract Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
 
  Address Aveiro, Portugal  
  Corporate Author Thesis  
  Publisher Springer Berlin Heidelberg Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN 0302-9743 ISBN 978-3-642-31297-7 Medium  
  Area 800 Expedition Conference ICIAR  
  Notes MV;IAM Approved no  
  Call Number IAM @ iam @ SSR2012 Serial 1898  
Permanent link to this record
 

 
Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
doi  openurl
  Title Impact of Image Preprocessing Methods on Polyp Localization in Colonoscopy Frames Type Conference Article
  Year 2013 Publication 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Abbreviated Journal  
  Volume Issue Pages 7350 - 7354  
  Keywords  
  Abstract In this paper we present our image preprocessing methods as a key part of our automatic polyp localization scheme. These methods are used to assess the impact of different endoluminal scene elements when characterizing polyps. More precisely we tackle the influence of specular highlights, blood vessels and black mask surrounding the scene. Experimental results prove that the appropriate handling of these elements leads to a great improvement in polyp localization results.  
  Address Osaka; Japan; July 2013  
  Corporate Author Thesis  
  Publisher Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1557-170X ISBN Medium  
  Area 800 Expedition Conference EMBC  
  Notes MV; 600.047; 600.060;SIAI Approved no  
  Call Number Admin @ si @ BSV2013 Serial 2286  
Permanent link to this record
 

 
Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
url  doi
openurl 
  Title Towards Automatic Polyp Detection with a Polyp Appearance Model Type Journal Article
  Year 2012 Publication Pattern Recognition Abbreviated Journal PR  
  Volume 45 Issue 9 Pages 3166-3182  
  Keywords Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot  
  Abstract This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.  
  Address  
  Corporate Author Thesis  
  Publisher Elsevier Place of Publication Editor (up)  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0031-3203 ISBN Medium  
  Area 800 Expedition Conference IbPRIA  
  Notes MV;SIAI Approved no  
  Call Number Admin @ si @ BSV2012; IAM @ iam Serial 1997  
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