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	Author	Debora Gil; Antonio Esteban Lansaque; Agnes Borras; Esmitt Ramirez; Carles Sanchez
	Title	Intraoperative Extraction of Airways Anatomy in VideoBronchoscopy			Type	Journal Article
	Year	2020	Publication	IEEE Access	Abbreviated Journal	ACCESS
	Volume	8	Issue		Pages	159696 - 159704
	Keywords
	Abstract	A main bottleneck in bronchoscopic biopsy sampling is to efficiently reach the lesion navigating across bronchial levels. Any guidance system should be able to localize the scope position during the intervention with minimal costs and alteration of clinical protocols. With the final goal of an affordable image-based guidance, this work presents a novel strategy to extract and codify the anatomical structure of bronchi, as well as, the scope navigation path from videobronchoscopy. Experiments using interventional data show that our method accurately identifies the bronchial structure. Meanwhile, experiments using simulated data verify that the extracted navigation path matches the 3D route.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.139; 600.145			Approved	no
	Call Number	Admin @ si @ GEB2020			Serial	3467
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	Author	Debora Gil; Antonio Esteban Lansaque; Agnes Borras; Carles Sanchez
	Title	Enhancing virtual bronchoscopy with intra-operative data using a multi-objective GAN			Type	Journal Article
	Year	2019	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCAR
	Volume	7	Issue	1	Pages
	Keywords
	Abstract	This manuscript has been withdrawn by bioRxiv due to upload of an incorrect version of the manuscript by the authors. Therefore, this manuscript should not be cited as reference for this project.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.139; 600.145			Approved	no
	Call Number	Admin @ si @ GEB2019			Serial	3307
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	Author	Debora Gil; Antoni Rosell
	Title	Advances in Artificial Intelligence – How Lung Cancer CT Screening Will Progress?			Type	Abstract
	Year	2019	Publication	World Lung Cancer Conference	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Invited speaker
	Address	Barcelona; September 2019
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	IASLC WCLC
	Notes	IAM; 600.139; 600.145			Approved	no
	Call Number	Admin @ si @ GiR2019			Serial	3361
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	Author	Debora Gil; Agnes Borras; Sergio Vera; Miguel Angel Gonzalez Ballester
	Title	A Validation Benchmark for Assessment of Medial Surface Quality for Medical Applications			Type	Conference Article
	Year	2013	Publication	9th International Conference on Computer Vision Systems	Abbreviated Journal
	Volume	7963	Issue		Pages	334-343
	Keywords	Medial Surfaces; Shape Representation; Medical Applications; Performance Evaluation
	Abstract	Confident use of medial surfaces in medical decision support systems requires evaluating their quality for detecting pathological deformations and describing anatomical volumes. Validation in the medical imaging field is a challenging task mainly due to the difficulties for getting consensual ground truth. In this paper we propose a validation benchmark for assessing medial surfaces in the context of medical applications. Our benchmark includes a home-made database of synthetic medial surfaces and volumes and specific scores for evaluating surface accuracy, its stability against volume deformations and its capabilities for accurate reconstruction of anatomical volumes.
	Address	Sant Petersburg; Russia; July 2013
	Corporate Author				Thesis
	Publisher	Springer Berlin Heidelberg	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN	0302-9743	ISBN	978-3-642-39401-0	Medium
	Area		Expedition		Conference	ICVS
	Notes	IAM; 600.044; 600.060			Approved	no
	Call Number	Admin @ si @ GBV2013			Serial	2300
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	Author	Debora Gil; Agnes Borras; Manuel Ballester; Francesc Carreras; Ruth Aris; Manuel Vazquez; Enric Marti; Ferran Poveda
	Title	MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis			Type	Conference Article
	Year	2011	Publication	14th International Symposium on Applied Sciences in Biomedical and Communication Technologies	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization.
	Address	Barcelona; Spain
	Corporate Author	Association for Computing Machinery			Thesis
	Publisher		Place of Publication	Barcelona, Spain	Editor	Association for Computing Machinery
	Language	english	Summary Language	english	Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-1-4503-0913-4	Medium
	Area		Expedition		Conference	ISABEL
	Notes	IAM			Approved	no
	Call Number	IAM @ iam @ GGB2011			Serial	1691
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	Author	Debora Gil; Oriol Rodriguez-Leor; Petia Radeva; Aura Hernandez-Sabate
	Title	Assessing Artery Motion Compensation in IVUS			Type	Book Chapter
	Year	2007	Publication	Computer Analysis Of Images And Patterns	Abbreviated Journal	LNCS
	Volume	4673	Issue		Pages	213-220
	Keywords	validation standards; quality measures; IVUS motion compensation; conservation laws; Fourier development
	Abstract	Cardiac dynamics suppression is a main issue for visual improvement and computation of tissue mechanical properties in IntraVascular UltraSound (IVUS). Although in recent times several motion compensation techniques have arisen, there is a lack of objective evaluation of motion reduction in in vivo pullbacks. We consider that the assessment protocol deserves special attention for the sake of a clinical applicability as reliable as possible. Our work focuses on defining a quality measure and a validation protocol assessing IVUS motion compensation. On the grounds of continuum mechanics laws we introduce a novel score measuring motion reduction in in vivo sequences. Synthetic experiments validate the proposed score as measure of motion parameters accuracy; while results in in vivo pullbacks show its reliability in clinical cases.
	Address
	Corporate Author				Thesis
	Publisher	Springerlink	Place of Publication	Heidelberg	Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title	Lecture Notes in Computer Science	Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-540-74271-5	Medium
	Area		Expedition		Conference
	Notes	IAM;MILAB			Approved	no
	Call Number	IAM @ iam @ GRR2007			Serial	1540
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	Author	Debora Gil
	Title	Geometric Differential Operators for Shape Modelling			Type	Book Whole
	Year	2004	Publication	PhD Thesis, Universitat Autonoma de Barcelona-CVC	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Medical imaging feeds research in many computer vision and image processing fields: image filtering, segmentation, shape recovery, registration, retrieval and pattern matching. Because of their low contrast changes and large variety of artifacts and noise, medical imaging processing techniques relying on an analysis of the geometry of image level sets rather than on intensity values result in more robust treatment. From the starting point of treatment of intravascular images, this PhD thesis ad- dresses the design of differential image operators based on geometric principles for a robust shape modelling and restoration. Among all fields applying shape recovery, we approach filtering and segmentation of image objects. For a successful use in real images, the segmentation process should go through three stages: noise removing, shape modelling and shape recovery. This PhD addresses all three topics, but for the sake of algorithms as automated as possible, techniques for image processing will be designed to satisfy three main principles: a) convergence of the iterative schemes to non-trivial states avoiding image degeneration to a constant image and representing smooth models of the originals; b) smooth asymptotic behav- ior ensuring stabilization of the iterative process; c) fixed parameter values ensuring equal (domain free) performance of the algorithms whatever initial images/shapes. Our geometric approach to the generic equations that model the different processes approached enables defining techniques satisfying all the former requirements. First, we introduce a new curvature-based geometric flow for image filtering achieving a good compromise between noise removing and resemblance to original images. Sec- ond, we describe a new family of diffusion operators that restrict their scope to image level curves and serve to restore smooth closed models from unconnected sets of points. Finally, we design a regularization of snake (distance) maps that ensures its smooth convergence towards any closed shape. Experiments show that performance of the techniques proposed overpasses that of state-of-the-art algorithms.
	Address
	Corporate Author				Thesis	Ph.D. thesis
	Publisher	Ediciones Graficas Rey	Place of Publication	Barcelona (Spain)	Editor	Jordi Saludes i Closa;Petia Radeva
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	84-933652-0-3	Medium	prit
	Area		Expedition		Conference
	Notes	IAM;			Approved	no
	Call Number	IAM @ iam @ GIL2004			Serial	1517
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	Author	Debora Gil
	Title	Regularized Curvature Flow			Type	Report
	Year	2002	Publication	CVC Technical Report	Abbreviated Journal
	Volume		Issue	63	Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher	Computer Vision Centre	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM;			Approved	no
	Call Number	IAM @ iam @ Gil2002			Serial	1518
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	Author	Dawid Rymarczyk; Joost van de Weijer; Bartosz Zielinski; Bartlomiej Twardowski
	Title	ICICLE: Interpretable Class Incremental Continual Learning. Dawid Rymarczyk			Type	Conference Article
	Year	2023	Publication	20th IEEE International Conference on Computer Vision	Abbreviated Journal
	Volume		Issue		Pages	1887-1898
	Keywords
	Abstract	Continual learning enables incremental learning of new tasks without forgetting those previously learned, resulting in positive knowledge transfer that can enhance performance on both new and old tasks. However, continual learning poses new challenges for interpretability, as the rationale behind model predictions may change over time, leading to interpretability concept drift. We address this problem by proposing Interpretable Class-InCremental LEarning (ICICLE), an exemplar-free approach that adopts a prototypical part-based approach. It consists of three crucial novelties: interpretability regularization that distills previously learned concepts while preserving user-friendly positive reasoning; proximity-based prototype initialization strategy dedicated to the fine-grained setting; and task-recency bias compensation devoted to prototypical parts. Our experimental results demonstrate that ICICLE reduces the interpretability concept drift and outperforms the existing exemplar-free methods of common class-incremental learning when applied to concept-based models.
	Address	Paris; France; October 2023
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ICCV
	Notes	LAMP			Approved	no
	Call Number	Admin @ si @ RWZ2023			Serial	3947
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	Author	David Vazquez; Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Antonio Lopez; Adriana Romero; Michal Drozdzal; Aaron Courville
	Title	A Benchmark for Endoluminal Scene Segmentation of Colonoscopy Images			Type	Conference Article
	Year	2017	Publication	31st International Congress and Exhibition on Computer Assisted Radiology and Surgery	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	Deep Learning; Medical Imaging
	Abstract	Colorectal cancer (CRC) is the third cause of cancer death worldwide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss-rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aiming to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extended benchmark of colonoscopy image, with the hope of establishing a new strong benchmark for colonoscopy image analysis research. We provide new baselines on this dataset by training standard fully convolutional networks (FCN) for semantic segmentation and significantly outperforming, without any further post-processing, prior results in endoluminal scene segmentation.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	CARS
	Notes	ADAS; MV; 600.075; 600.085; 600.076; 601.281; 600.118			Approved	no
	Call Number	ADAS @ adas @ VBS2017a			Serial	2880
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	Author	David Vazquez; Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Antonio Lopez; Adriana Romero; Michal Drozdzal; Aaron Courville
	Title	A Benchmark for Endoluminal Scene Segmentation of Colonoscopy Images			Type	Journal Article
	Year	2017	Publication	Journal of Healthcare Engineering	Abbreviated Journal	JHCE
	Volume		Issue		Pages	2040-2295
	Keywords	Colonoscopy images; Deep Learning; Semantic Segmentation
	Abstract	Colorectal cancer (CRC) is the third cause of cancer death world-wide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss- rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aim- ing to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extended benchmark of colonoscopy image segmentation, with the hope of establishing a new strong benchmark for colonoscopy image analysis research. The proposed dataset consists of 4 relevant classes to inspect the endolumninal scene, tar- geting different clinical needs. Together with the dataset and taking advantage of advances in semantic segmentation literature, we provide new baselines by training standard fully convolutional networks (FCN). We perform a compar- ative study to show that FCN significantly outperform, without any further post-processing, prior results in endoluminal scene segmentation, especially with respect to polyp segmentation and localization.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; MV; 600.075; 600.085; 600.076; 601.281; 600.118			Approved	no
	Call Number	VBS2017b			Serial	2940
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	Author	David Vazquez; Jiaolong Xu; Sebastian Ramos; Antonio Lopez; Daniel Ponsa
	Title	Weakly Supervised Automatic Annotation of Pedestrian Bounding Boxes			Type	Conference Article
	Year	2013	Publication	CVPR Workshop on Ground Truth – What is a good dataset?	Abbreviated Journal
	Volume		Issue		Pages	706 - 711
	Keywords	Pedestrian Detection; Domain Adaptation
	Abstract	Among the components of a pedestrian detector, its trained pedestrian classifier is crucial for achieving the desired performance. The initial task of the training process consists in collecting samples of pedestrians and background, which involves tiresome manual annotation of pedestrian bounding boxes (BBs). Thus, recent works have assessed the use of automatically collected samples from photo-realistic virtual worlds. However, learning from virtual-world samples and testing in real-world images may suffer the dataset shift problem. Accordingly, in this paper we assess an strategy to collect samples from the real world and retrain with them, thus avoiding the dataset shift, but in such a way that no BBs of real-world pedestrians have to be provided. In particular, we train a pedestrian classifier based on virtual-world samples (no human annotation required). Then, using such a classifier we collect pedestrian samples from real-world images by detection. After, a human oracle rejects the false detections efficiently (weak annotation). Finally, a new classifier is trained with the accepted detections. We show that this classifier is competitive with respect to the counterpart trained with samples collected by manually annotating hundreds of pedestrian BBs.
	Address	Portland; Oregon; June 2013
	Corporate Author				Thesis
	Publisher	IEEE	Place of Publication		Editor
	Language	English	Summary Language	English	Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	CVPRW
	Notes	ADAS; 600.054; 600.057; 601.217			Approved	no
	Call Number	ADAS @ adas @ VXR2013a			Serial	2219
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	Author	David Vazquez; Javier Marin; Antonio Lopez; Daniel Ponsa; David Geronimo
	Title	Virtual and Real World Adaptation for Pedestrian Detection			Type	Journal Article
	Year	2014	Publication	IEEE Transactions on Pattern Analysis and Machine Intelligence	Abbreviated Journal	TPAMI
	Volume	36	Issue	4	Pages	797-809
	Keywords	Domain Adaptation; Pedestrian Detection
	Abstract	Pedestrian detection is of paramount interest for many applications. Most promising detectors rely on discriminatively learnt classifiers, i.e., trained with annotated samples. However, the annotation step is a human intensive and subjective task worth to be minimized. By using virtual worlds we can automatically obtain precise and rich annotations. Thus, we face the question: can a pedestrian appearance model learnt in realistic virtual worlds work successfully for pedestrian detection in realworld images?. Conducted experiments show that virtual-world based training can provide excellent testing accuracy in real world, but it can also suffer the dataset shift problem as real-world based training does. Accordingly, we have designed a domain adaptation framework, V-AYLA, in which we have tested different techniques to collect a few pedestrian samples from the target domain (real world) and combine them with the many examples of the source domain (virtual world) in order to train a domain adapted pedestrian classifier that will operate in the target domain. V-AYLA reports the same detection accuracy than when training with many human-provided pedestrian annotations and testing with real-world images of the same domain. To the best of our knowledge, this is the first work demonstrating adaptation of virtual and real worlds for developing an object detector.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0162-8828	ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.057; 600.054; 600.076			Approved	no
	Call Number	ADAS @ adas @ VML2014			Serial	2275
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	Author	David Vazquez; Enrique Cabello
	Title	Empleo de sistemas biométricos faciales aplicados al reconocimiento de personas en aeropuertos			Type	Report
	Year	2007	Publication	Ingeniería Técnica en Informática de Sistemas	Abbreviated Journal	URJC
	Volume		Issue		Pages
	Keywords	Surveillance; Face detection; Face recognition
	Abstract	El presente proyecto se desarrolló a lo largo del año 2005 y 2006, probando un prototipo de un sistema de verificación facial con imágenes extraídas de las cámaras de video-vigilancia del aeropuerto de Barajas. Se diseñaron varios experimentos, agrupados en dos clases. En el primer tipo, el sistema es entre- nado con imágenes obtenidas en condiciones de laboratorio y luego probado con imágenes extraídas de las cámaras de video-vigilancia del aeropuerto de Barajas. En el segundo caso, tanto las imágenes de entrenamiento como las de prueba corresponden a imágenes extraídas de Barajas. Se ha desarrollado un sistema completo, que incluye adquisición y digitalización de las imágenes, localización y recorte de las caras en escena, verificación de sujetos y obtención de resultados. Los resultados muestran que, en general, un sistema de verificación facial basado en imágenes puede ser una valiosa ayuda a un operario que deba estar vigilando amplias zonas.
	Address
	Corporate Author				Thesis	Bachelor's thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	invisible;ADAS			Approved	no
	Call Number	ADAS @ adas @ VC2007a			Serial	1671
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	Author	David Vazquez; David Geronimo; Antonio Lopez
	Title	The effect of the distance in pedestrian detection			Type	Report
	Year	2009	Publication	CVC Technical Report	Abbreviated Journal
	Volume	149	Issue		Pages
	Keywords	Pedestrian Detection
	Abstract	Pedestrian accidents are one of the leading preventable causes of death. In order to reduce the number of accidents, in the last decade the pedestrian protection systems have been introduced, a special type of advanced driver assistance systems, in witch an on-board camera explores the road ahead for possible collisions with pedestrians in order to warn the driver or perform braking actions. As a result of the variability of the appearance, pose and size, pedestrian detection is a very challenging task. So many techniques, models and features have been proposed to solve the problem. As the appearance of pedestrians varies signicantly as a function of distance, a system based on multiple classiers specialized on diferent depths is likely to improve the overall performance with respect to a typical system based on a general detector. Accordingly, the main aim of this work is to explore the eect of the distance in pedestrian detection. We have evaluated three pedestrian detectors (HOG, HAAR and EOH) in two dierent databases (INRIA and Daimler09) for two dierent sizes (small and big). By a extensive set of experiments we answer to questions like which datasets and evaluation methods are the most adequate, which is the best method for each size of the pedestrians and why or how do the method optimum parameters vary with respect to the distance
	Address
	Corporate Author				Thesis	Master's thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	M.Sc.
	Notes	ADAS			Approved	no
	Call Number	ADAS @ adas @ VGL2009			Serial	1669
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