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Author  |
Mariella Dimiccoli; Jean-Pascal Jacob; Lionel Moisan |
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Title |
Particle detection and tracking in fluorescence time-lapse imaging: a contrario approach |
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Journal Article |
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2016 |
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Journal of Machine Vision and Applications |
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MVAP |
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27 |
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511-527 |
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particle detection; particle tracking; a-contrario approach; time-lapse fluorescence imaging |
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In this work, we propose a probabilistic approach for the detection and the
tracking of particles on biological images. In presence of very noised and poor
quality data, particles and trajectories can be characterized by an a-contrario
model, that estimates the probability of observing the structures of interest
in random data. This approach, first introduced in the modeling of human visual
perception and then successfully applied in many image processing tasks, leads
to algorithms that do not require a previous learning stage, nor a tedious
parameter tuning and are very robust to noise. Comparative evaluations against
a well established baseline show that the proposed approach outperforms the
state of the art. |
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MILAB; |
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Admin @ si @ DJM2016 |
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2735 |
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Author |
Mariella Dimiccoli; Cathal Gurrin; David J. Crandall; Xavier Giro; Petia Radeva |
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Title |
Introduction to the special issue: Egocentric Vision and Lifelogging |
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Journal Article |
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2018 |
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Journal of Visual Communication and Image Representation |
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JVCIR |
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55 |
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352-353 |
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MILAB; no proj |
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no |
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Admin @ si @ DGC2018 |
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3187 |
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Author |
Mariella Dimiccoli; Benoît Girard; Alain Berthoz; Daniel Bennequin |
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Title |
Striola Magica: a functional explanation of otolith organs |
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Journal Article |
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Year |
2013 |
Publication |
Journal of Computational Neuroscience |
Abbreviated Journal |
JCN |
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35 |
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2 |
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125-154 |
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Otolith organs ;Striola; Vestibular pathway |
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Otolith end organs of vertebrates sense linear accelerations of the head and gravitation. The hair cells on their epithelia are responsible for transduction. In mammals, the striola, parallel to the line where hair cells reverse their polarization, is a narrow region centered on a curve with curvature and torsion. It has been shown that the striolar region is functionally different from the rest, being involved in a phasic vestibular pathway. We propose a mathematical and computational model that explains the necessity of this amazing geometry for the striola to be able to carry out its function. Our hypothesis, related to the biophysics of the hair cells and to the physiology of their afferent neurons, is that striolar afferents collect information from several type I hair cells to detect the jerk in a large domain of acceleration directions. This predicts a mean number of two calyces for afferent neurons, as measured in rodents. The domain of acceleration directions sensed by our striolar model is compatible with the experimental results obtained on monkeys considering all afferents. Therefore, the main result of our study is that phasic and tonic vestibular afferents cover the same geometrical fields, but at different dynamical and frequency domains. |
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Springer US |
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1573-6873. 2013 |
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MILAB |
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Admin @ si @DBG2013 |
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2787 |
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Author |
Mariella Dimiccoli |
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Title |
Figure-ground segregation: A fully nonlocal approach |
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Journal Article |
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Year |
2016 |
Publication |
Vision Research |
Abbreviated Journal |
VR |
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126 |
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308-317 |
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Figure-ground segregation; Nonlocal approach; Directional linear voting; Nonlinear diffusion |
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We present a computational model that computes and integrates in a nonlocal fashion several configural cues for automatic figure-ground segregation. Our working hypothesis is that the figural status of each pixel is a nonlocal function of several geometric shape properties and it can be estimated without explicitly relying on object boundaries. The methodology is grounded on two elements: multi-directional linear voting and nonlinear diffusion. A first estimation of the figural status of each pixel is obtained as a result of a voting process, in which several differently oriented line-shaped neighborhoods vote to express their belief about the figural status of the pixel. A nonlinear diffusion process is then applied to enforce the coherence of figural status estimates among perceptually homogeneous regions. Computer simulations fit human perception and match the experimental evidence that several cues cooperate in defining figure-ground segregation. The results of this work suggest that figure-ground segregation involves feedback from cells with larger receptive fields in higher visual cortical areas. |
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MILAB; |
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Admin @ si @ Dim2016b |
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2623 |
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Author |
Mariella Dimiccoli |
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Title |
Fundamentals of cone regression |
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2016 |
Publication |
Journal of Statistics Surveys |
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10 |
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53-99 |
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Keywords |
cone regression; linear complementarity problems; proximal operators. |
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Cone regression is a particular case of quadratic programming that minimizes a weighted sum of squared residuals under a set of linear inequality constraints. Several important statistical problems such as isotonic, concave regression or ANOVA under partial orderings, just to name a few, can be considered as particular instances of the cone regression problem. Given its relevance in Statistics, this paper aims to address the fundamentals of cone regression from a theoretical and practical point of view. Several formulations of the cone regression problem are considered and, focusing on the particular case of concave regression as an example, several algorithms are analyzed and compared both qualitatively and quantitatively through numerical simulations. Several improvements to enhance numerical stability and bound the computational cost are proposed. For each analyzed algorithm, the pseudo-code and its corresponding code in Matlab are provided. The results from this study demonstrate that the choice of the optimization approach strongly impacts the numerical performances. It is also shown that methods are not currently available to solve efficiently cone regression problems with large dimension (more than many thousands of points). We suggest further research to fill this gap by exploiting and adapting classical multi-scale strategy to compute an approximate solution. |
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1935-7516 |
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MILAB; |
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Admin @ si @Dim2016a |
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2783 |
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Author |
Mariano Vazquez; Ruth Aris; Guillaume Hozeaux; R.Aubry; P.Villar;Jaume Garcia ; Debora Gil; Francesc Carreras |
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Title |
A massively parallel computational electrophysiology model of the heart |
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Journal Article |
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Year |
2011 |
Publication |
International Journal for Numerical Methods in Biomedical Engineering |
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IJNMBE |
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27 |
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1911-1929 |
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computational electrophysiology; parallelization; finite element methods |
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This paper presents a patient-sensitive simulation strategy capable of using the most efficient way the high-performance computational resources. The proposed strategy directly involves three different players: Computational Mechanics Scientists (CMS), Image Processing Scientists and Cardiologists, each one mastering its own expertise area within the project. This paper describes the general integrative scheme but focusing on the CMS side presents a massively parallel implementation of computational electrophysiology applied to cardiac tissue simulation. The paper covers different angles of the computational problem: equations, numerical issues, the algorithm and parallel implementation. The proposed methodology is illustrated with numerical simulations testing all the different possibilities, ranging from small domains up to very large ones. A key issue is the almost ideal scalability not only for large and complex problems but also for medium-size meshes. The explicit formulation is particularly well suited for solving this highly transient problems, with very short time-scale. |
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Swansea (UK) |
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John Wiley & Sons, Ltd. |
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John Wiley & Sons, Ltd. |
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IAM |
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IAM @ iam @ VAH2011 |
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1198 |
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Author |
Maria Vanrell; Ramon Baldrich; Anna Salvatella; Robert Benavente; Francesc Tous |
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Title |
Induction operators for a computational colour-texture representation |
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2004 |
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Computer Vision and Image Understanding, 94(1–3):92–114, ISSN: 1077–3142 (IF: 0.651) |
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CIC |
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CAT @ cat @ VBS2004 |
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453 |
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Author |
Maria Vanrell; Naila Murray; Robert Benavente; C. Alejandro Parraga; Xavier Otazu; Ramon Baldrich |
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Title |
Perception Based Representations for Computational Colour |
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Conference Article |
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2011 |
Publication |
3rd International Workshop on Computational Color Imaging |
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6626 |
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16-30 |
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colour perception, induction, naming, psychophysical data, saliency, segmentation |
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The perceived colour of a stimulus is dependent on multiple factors stemming out either from the context of the stimulus or idiosyncrasies of the observer. The complexity involved in combining these multiple effects is the main reason for the gap between classical calibrated colour spaces from colour science and colour representations used in computer vision, where colour is just one more visual cue immersed in a digital image where surfaces, shadows and illuminants interact seemingly out of control. With the aim to advance a few steps towards bridging this gap we present some results on computational representations of colour for computer vision. They have been developed by introducing perceptual considerations derived from the interaction of the colour of a point with its context. We show some techniques to represent the colour of a point influenced by assimilation and contrast effects due to the image surround and we show some results on how colour saliency can be derived in real images. We outline a model for automatic assignment of colour names to image points directly trained on psychophysical data. We show how colour segments can be perceptually grouped in the image by imposing shading coherence in the colour space. |
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Milan, Italy |
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Springer-Verlag |
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Raimondo Schettini, Shoji Tominaga, Alain Trémeau |
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978-3-642-20403-6 |
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CCIW |
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Admin @ si @ VMB2011 |
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1733 |
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Maria Vanrell; Jordi Vitria; Xavier Roca |
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A multidimensional scaling approach to explore the behavior of a texture perception algorithm. |
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1997 |
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Machine Vision and Applications |
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9 |
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262–271 |
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OR;ISE;CIC;MV |
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BCNPCL @ bcnpcl @ VVR1997 |
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35 |
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Maria Vanrell; Jordi Vitria; Xavier Roca |
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A General Morphological Framework for Perceptual Texture Discrimination based on Granulometries. |
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1993 |
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Technical Workshop on Mathematical Morphology and its Applications to Signal Processing. |
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Barcelona |
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OR;ISE;CIC;MV |
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BCNPCL @ bcnpcl @ VVR1993 |
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154 |
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Maria Vanrell; Jordi Vitria |
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Mathematical Morphology, Granulometries and Texture Perception. |
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1993 |
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SPIE International Symposium on Optical Instrumentation and Applied Science (Conference on image Algebra and Morphological image Processing IV). |
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San Diego; CA; USA |
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BCNPCL @ bcnpcl @ VaV1993 |
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178 |
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Maria Vanrell; Jordi Vitria |
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Optimal 3x3 decomposable disks for morphological transformations |
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1997 |
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Image and Vision Computing, 15(2): 845–854 |
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BCNPCL @ bcnpcl @ VaV1997c |
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543 |
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Maria Vanrell; Felipe Lumbreras; A. Pujol; Ramon Baldrich; Josep Llados; Juan J. Villanueva |
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Colour Normalisation Based on Background Information. |
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2001 |
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Proceeding ICIP 2001, IEEE International Conference on Image Processing |
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ICIP 2001 |
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874–877 |
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Grecia. |
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ADAS @ adas @ VLP2001 |
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167 |
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Maria Vanrell |
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Exploring the space of behaviour of a texture perception algorithm |
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1997 |
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CVC Technical Report #12 |
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CVC (UAB) |
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CAT @ cat @ Van1997 |
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523 |
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Maria Salamo; Sergio Escalera; Petia Radeva |
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Quality Enhancement based on Reinforcement Learning and Feature Weighting for a Critiquing-Based Recommender |
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2009 |
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8th International Conference on Case-Based Reasoning |
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5650 |
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298–312 |
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Abstract |
Personalizing the product recommendation task is a major focus of research in the area of conversational recommender systems. Conversational case-based recommender systems help users to navigate through product spaces, alternatively making product suggestions and eliciting users feedback. Critiquing is a common form of feedback and incremental critiquing-based recommender system has shown its efficiency to personalize products based primarily on a quality measure. This quality measure influences the recommendation process and it is obtained by the combination of compatibility and similarity scores. In this paper, we describe new compatibility strategies whose basis is on reinforcement learning and a new feature weighting technique which is based on the user’s history of critiques. Moreover, we show that our methodology can significantly improve recommendation efficiency in comparison with the state-of-the-art approaches. |
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Seattle, USA |
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Publisher |
Springer Berlin Heidelberg |
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ISSN |
0302-9743 |
ISBN |
978-3-642-02998-1 |
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ICCBR |
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Notes |
HuPBA; MILAB |
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no |
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Call Number |
BCNPCL @ bcnpcl @ SER2009 |
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1187 |
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