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Author (down) M. Gomez; J. Mauri; E. Fernandez-Nofrerias; Oriol Rodriguez-Leor; Carme Julia; Oriol Pujol; Petia Radeva edit  openurl
  Title Diferenciacion de las estructuras del vaso coronario mediante el procesamiento de imagenes y el analisis de las diferentes texturas a partir de la ecografia intracoronaria Type Journal
  Year 2002 Publication XXXVIII Congreso Nacional de la Sociedad Española de Cardiologia Abbreviated Journal  
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  Address Madrid  
  Corporate Author Thesis  
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  Series Volume Series Issue Edition  
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  Area Expedition Conference  
  Notes MILAB;HuPBA Approved no  
  Call Number BCNPCL @ bcnpcl @ GMF2002f Serial 433  
Permanent link to this record
 

 
Author (down) Lei Li; Fuping Wu; Sihan Wang; Xinzhe Luo; Carlos Martin-Isla; Shuwei Zhai; Jianpeng Zhang; Yanfei Liu; Zhen Zhang; Markus J. Ankenbrand; Haochuan Jiang; Xiaoran Zhang; Linhong Wang; Tewodros Weldebirhan Arega; Elif Altunok; Zhou Zhao; Feiyan Li; Jun Ma; Xiaoping Yang; Elodie Puybareau; Ilkay Oksuz; Stephanie Bricq; Weisheng Li;Kumaradevan Punithakumar; Sotirios A. Tsaftaris; Laura M. Schreiber; Mingjing Yang; Guocai Liu; Yong Xia; Guotai Wang; Sergio Escalera; Xiahai Zhuag edit  url
openurl 
  Title MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images Type Journal Article
  Year 2023 Publication Medical Image Analysis Abbreviated Journal MIA  
  Volume 87 Issue Pages 102808  
  Keywords  
  Abstract Assessment of myocardial viability is essential in diagnosis and treatment management of patients suffering from myocardial infarction, and classification of pathology on the myocardium is the key to this assessment. This work defines a new task of medical image analysis, i.e., to perform myocardial pathology segmentation (MyoPS) combining three-sequence cardiac magnetic resonance (CMR) images, which was first proposed in the MyoPS challenge, in conjunction with MICCAI 2020. Note that MyoPS refers to both myocardial pathology segmentation and the challenge in this paper. The challenge provided 45 paired and pre-aligned CMR images, allowing algorithms to combine the complementary information from the three CMR sequences for pathology segmentation. In this article, we provide details of the challenge, survey the works from fifteen participants and interpret their methods according to five aspects, i.e., preprocessing, data augmentation, learning strategy, model architecture and post-processing. In addition, we analyze the results with respect to different factors, in order to examine the key obstacles and explore the potential of solutions, as well as to provide a benchmark for future research. The average Dice scores of submitted algorithms were and for myocardial scars and edema, respectively. We conclude that while promising results have been reported, the research is still in the early stage, and more in-depth exploration is needed before a successful application to the clinics. MyoPS data and evaluation tool continue to be publicly available upon registration via its homepage (www.sdspeople.fudan.edu.cn/zhuangxiahai/0/myops20/).  
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  Notes HUPBA;MILAB Approved no  
  Call Number Admin @ si @ LWW2023a Serial 3878  
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Author (down) Laura Igual; Xavier Perez Sala; Sergio Escalera; Cecilio Angulo; Fernando De la Torre edit   pdf
url  doi
openurl 
  Title Continuous Generalized Procrustes Analysis Type Journal Article
  Year 2014 Publication Pattern Recognition Abbreviated Journal PR  
  Volume 47 Issue 2 Pages 659–671  
  Keywords Procrustes analysis; 2D shape model; Continuous approach  
  Abstract PR4883, PII: S0031-3203(13)00327-0
Two-dimensional shape models have been successfully applied to solve many problems in computer vision, such as object tracking, recognition, and segmentation. Typically, 2D shape models are learned from a discrete set of image landmarks (corresponding to projection of 3D points of an object), after applying Generalized Procustes Analysis (GPA) to remove 2D rigid transformations. However, the
standard GPA process suffers from three main limitations. Firstly, the 2D training samples do not necessarily cover a uniform sampling of all the 3D transformations of an object. This can bias the estimate of the shape model. Secondly, it can be computationally expensive to learn the shape model by sampling 3D transformations. Thirdly, standard GPA methods use only one reference shape, which can might be insufficient to capture large structural variability of some objects.
To address these drawbacks, this paper proposes continuous generalized Procrustes analysis (CGPA).
CGPA uses a continuous formulation that avoids the need to generate 2D projections from all the rigid 3D transformations. It builds an efficient (in space and time) non-biased 2D shape model from a set of 3D model of objects. A major challenge in CGPA is the need to integrate over the space of 3D rotations, especially when the rotations are parameterized with Euler angles. To address this problem, we introduce the use of the Haar measure. Finally, we extended CGPA to incorporate several reference shapes. Experimental results on synthetic and real experiments show the benefits of CGPA over GPA.
 
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  Notes OR; HuPBA; 605.203; 600.046;MILAB Approved no  
  Call Number Admin @ si @ IPE2014 Serial 2352  
Permanent link to this record
 

 
Author (down) Laura Igual; Joan Carles Soliva; Sergio Escalera; Roger Gimeno; Oscar Vilarroya; Petia Radeva edit   pdf
url  doi
openurl 
  Title Automatic Brain Caudate Nuclei Segmentation and Classification in Diagnostic of Attention-Deficit/Hyperactivity Disorder Type Journal Article
  Year 2012 Publication Computerized Medical Imaging and Graphics Abbreviated Journal CMIG  
  Volume 36 Issue 8 Pages 591-600  
  Keywords Automatic caudate segmentation; Attention-Deficit/Hyperactivity Disorder; Diagnostic test; Machine learning; Decision stumps; Dissociated dipoles  
  Abstract We present a fully automatic diagnostic imaging test for Attention-Deficit/Hyperactivity Disorder diagnosis assistance based on previously found evidences of caudate nucleus volumetric abnormalities. The proposed method consists of different steps: a new automatic method for external and internal segmentation of caudate based on Machine Learning methodologies; the definition of a set of new volume relation features, 3D Dissociated Dipoles, used for caudate representation and classification. We separately validate the contributions using real data from a pediatric population and show precise internal caudate segmentation and discrimination power of the diagnostic test, showing significant performance improvements in comparison to other state-of-the-art methods.  
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  Notes OR; HuPBA; MILAB Approved no  
  Call Number Admin @ si @ ISE2012 Serial 2143  
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Author (down) Laura Igual; Joan Carles Soliva; Antonio Hernandez; Sergio Escalera; Xavier Jimenez ; Oscar Vilarroya; Petia Radeva edit  doi
openurl 
  Title A fully-automatic caudate nucleus segmentation of brain MRI: Application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder Type Journal Article
  Year 2011 Publication BioMedical Engineering Online Abbreviated Journal BEO  
  Volume 10 Issue 105 Pages 1-23  
  Keywords Brain caudate nucleus; segmentation; MRI; atlas-based strategy; Graph Cut framework  
  Abstract Background
Accurate automatic segmentation of the caudate nucleus in magnetic resonance images (MRI) of the brain is of great interest in the analysis of developmental disorders. Segmentation methods based on a single atlas or on multiple atlases have been shown to suitably localize caudate structure. However, the atlas prior information may not represent the structure of interest correctly. It may therefore be useful to introduce a more flexible technique for accurate segmentations.

Method
We present Cau-dateCut: a new fully-automatic method of segmenting the caudate nucleus in MRI. CaudateCut combines an atlas-based segmentation strategy with the Graph Cut energy-minimization framework. We adapt the Graph Cut model to make it suitable for segmenting small, low-contrast structures, such as the caudate nucleus, by defining new energy function data and boundary potentials. In particular, we exploit information concerning the intensity and geometry, and we add supervised energies based on contextual brain structures. Furthermore, we reinforce boundary detection using a new multi-scale edgeness measure.

Results
We apply the novel CaudateCut method to the segmentation of the caudate nucleus to a new set of 39 pediatric attention-deficit/hyperactivity disorder (ADHD) patients and 40 control children, as well as to a public database of 18 subjects. We evaluate the quality of the segmentation using several volumetric and voxel by voxel measures. Our results show improved performance in terms of segmentation compared to state-of-the-art approaches, obtaining a mean overlap of 80.75%. Moreover, we present a quantitative volumetric analysis of caudate abnormalities in pediatric ADHD, the results of which show strong correlation with expert manual analysis.

Conclusion
CaudateCut generates segmentation results that are comparable to gold-standard segmentations and which are reliable in the analysis of differentiating neuroanatomical abnormalities between healthy controls and pediatric ADHD.
 
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  Series Volume Series Issue Edition  
  ISSN 1475-925X ISBN Medium  
  Area Expedition Conference  
  Notes MILAB;HuPBA Approved no  
  Call Number Admin @ si @ ISH2011 Serial 1882  
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