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	Author	A. M. Here; B. C. Lopez; Debora Gil; J. J. Camarero; Jordi Martinez-Vilalta
	Title	A new software to analyse wood anatomical features in conifer species			Type	Conference Article
	Year	2013	Publication	International Symposium on Wood Structure in Plant Biology and Ecology	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	International Symposium on Wood Structure in Plant Biology and Ecology
	Address	Naples; Italy; March 2013
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	WSE
	Notes	IAM			Approved	no
	Call Number	Admin @ si @ HLG2013			Serial	2303
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	Author	Albert Andaluz; Francesc Carreras; Cristina Santa Marta;Debora Gil
	Title	Myocardial torsion estimation with Tagged-MRI in the OsiriX platform			Type	Conference Article
	Year	2012	Publication	ISBI Workshop on Open Source Medical Image Analysis software	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Myocardial torsion (MT) plays a crucial role in the assessment of the functionality of the left ventricle. For this purpose, the IAM group at the CVC has developed the Harmonic Phase Flow (HPF) plugin for the Osirix DICOM platform . We have validated its funcionalty on sequences acquired using different protocols and including healthy and pathological cases. Results show similar torsion trends for SPAMM acquisitions, with pathological cases introducing expected deviations from the ground truth. Finally, we provide the plugin free of charge at http://iam.cvc.uab.es
	Address	Barcelona, Spain
	Corporate Author				Thesis
	Publisher	IEEE	Place of Publication		Editor	Wiro Niessen (Erasmus MC) and Marc Modat (UCL)
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ISBI
	Notes	IAM			Approved	no
	Call Number	IAM @ iam @ ACS2012			Serial	1900
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	Author	Albert Andaluz; Francesc Carreras; Debora Gil; Jaume Garcia
	Title	Una aplicació amigable pel càlcul de indicadors clínics del ventricle esquerre			Type	Miscellaneous
	Year	2010	Publication	Forum Biocat 2010	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address	Lonja de Mar,Barcelona (Spain)
	Corporate Author	CVC			Thesis
	Publisher	Biocat	Place of Publication	Barcelona	Editor
	Language	Catalan	Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	IAM @ iam @ ACG2010			Serial	1483
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	Author	Alberto Hidalgo; Ferran Poveda; Enric Marti;Debora Gil;Albert Andaluz; Francesc Carreras; Manuel Ballester
	Title	Evidence of continuous helical structure of the cardiac ventricular anatomy assessed by diffusion tensor imaging magnetic resonance multiresolution tractography			Type	Journal Article
	Year	2012	Publication	European Radiology	Abbreviated Journal	ECR
	Volume	3	Issue	1	Pages	361-362
	Keywords
	Abstract	Deep understanding of myocardial structure linking morphology and func- tion of the heart would unravel crucial knowledge for medical and surgical clinical procedures and studies. Diffusion tensor MRI provides a discrete measurement of the 3D arrangement of myocardial fibres by the observation of local anisotropic diffusion of water molecules in biological tissues. In this work, we present a multi- scale visualisation technique based on DT-MRI streamlining capable of uncovering additional properties of the architectural organisation of the heart. Methods and Materials: We selected the John Hopkins University (JHU) Canine Heart Dataset, where the long axis cardiac plane is aligned with the scanner’s Z- axis. Their equipment included a 4-element passed array coil emitting a 1.5 T. For DTI acquisition, a 3D-FSE sequence is apply. We used 200 seeds for full-scale tractography, while we applied a MIP mapping technique for simplified tractographic reconstruction. In this case, we reduced each DTI 3D volume dimensions by order- two magnitude before streamlining. Our simplified tractographic reconstruction method keeps the main geometric features of fibres, allowing for an easier identification of their global morphological disposition, including the ventricular basal ring. Moreover, we noticed a clearly visible helical disposition of the myocardial fibres, in line with the helical myocardial band ventricular structure described by Torrent-Guasp. Finally, our simplified visualisation with single tracts identifies the main segments of the helical ventricular architecture. DT-MRI makes possible the identification of a continuous helical architecture of the myocardial fibres, which validates Torrent-Guasp’s helical myocardial band ventricular anatomical model.
	Address	Viena, Austria
	Corporate Author				Thesis
	Publisher	Springer Link	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1869-4101	ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	IAM @ iam @ HPM2012			Serial	1858
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	Author	Antoni Gurgui; Debora Gil; Enric Marti
	Title	Laplacian Unitary Domain for Texture Morphing			Type	Conference Article
	Year	2015	Publication	Proceedings of the 10th International Conference on Computer Vision Theory and Applications VISIGRAPP2015	Abbreviated Journal
	Volume	1	Issue		Pages	693-699
	Keywords	Facial; metamorphosis;LaplacianMorphing
	Abstract	Deformation of expressive textures is the gateway to realistic computer synthesis of expressions. By their good mathematical properties and flexible formulation on irregular meshes, most texture mappings rely on solutions to the Laplacian in the cartesian space. In the context of facial expression morphing, this approximation can be seen from the opposite point of view by neglecting the metric. In this paper, we use the properties of the Laplacian in manifolds to present a novel approach to warping expressive facial images in order to generate a morphing between them.
	Address	Munich; Germany; February 2015
	Corporate Author				Thesis
	Publisher	SciTePress	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-989-758-089-5	Medium
	Area		Expedition		Conference	VISAPP
	Notes	IAM; 600.075			Approved	no
	Call Number	Admin @ si @ GGM2015			Serial	2614
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	Author	Antoni Gurgui; Debora Gil; Enric Marti; Vicente Grau
	Title	Left-Ventricle Basal Region Constrained Parametric Mapping to Unitary Domain			Type	Conference Article
	Year	2016	Publication	7th International Workshop on Statistical Atlases & Computational Modelling of the Heart	Abbreviated Journal
	Volume	10124	Issue		Pages	163-171
	Keywords	Laplacian; Constrained maps; Parameterization; Basal ring
	Abstract	Due to its complex geometry, the basal ring is often omitted when putting different heart geometries into correspondence. In this paper, we present the first results on a new mapping of the left ventricle basal rings onto a normalized coordinate system using a fold-over free approach to the solution to the Laplacian. To guarantee correspondences between different basal rings, we imposed some internal constrained positions at anatomical landmarks in the normalized coordinate system. To prevent internal fold-overs, constraints are handled by cutting the volume into regions defined by anatomical features and mapping each piece of the volume separately. Initial results presented in this paper indicate that our method is able to handle internal constrains without introducing fold-overs and thus guarantees one-to-one mappings between different basal ring geometries.
	Address	Athens; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	STACOM
	Notes	IAM;			Approved	no
	Call Number	Admin @ si @ GGM2016			Serial	2884
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	Author	Antoni Rosell; Sonia Baeza; S. Garcia-Reina; JL. Mate; Ignasi Guasch; I. Nogueira; I. Garcia-Olive; Guillermo Torres; Carles Sanchez; Debora Gil
	Title	Radiomics to increase the effectiveness of lung cancer screening programs. Radiolung preliminary results.			Type	Journal Article
	Year	2022	Publication	European Respiratory Journal	Abbreviated Journal	ERJ
	Volume	60	Issue	66	Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	Admin @ si @ RBG2022c			Serial	3835
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	Author	Antoni Rosell; Sonia Baeza; S. Garcia-Reina; JL. Mate; Ignasi Guasch; I. Nogueira; I. Garcia-Olive; Guillermo Torres; Carles Sanchez; Debora Gil
	Title	EP01.05-001 Radiomics to Increase the Effectiveness of Lung Cancer Screening Programs. Radiolung Preliminary Results			Type	Journal Article
	Year	2022	Publication	Journal of Thoracic Oncology	Abbreviated Journal	JTO
	Volume	17	Issue	9	Pages	S182
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	Admin @ si @ RBG2022b			Serial	3834
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	Author	Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil
	Title	Stable Anatomical Structure Tracking for video-bronchoscopy Navigation			Type	Conference Article
	Year	2016	Publication	19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking
	Abstract	Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at dierent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations.
	Address	Athens; Greece; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MICCAIW
	Notes	IAM; 600.075			Approved	no
	Call Number	Admin @ si @ LSB2016b			Serial	2857
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	Author	Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil
	Title	Stable Airway Center Tracking for Bronchoscopic Navigation			Type	Conference Article
	Year	2016	Publication	28th Conference of the international Society for Medical Innovation and Technology	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Bronchoscopists use X‐ray fluoroscopy to guide bronchoscopes to the lesion to be biopsied without any kind of incisions. Reducing exposure to X‐ray is important for both patients and doctors but alternatives like electromagnetic navigation require specific equipment and increase the cost of the clinical procedure. We propose a guiding system based on the extraction of airway centers from intra‐operative videos. Such anatomical landmarks could be matched to the airway centerline extracted from a pre‐planned CT to indicate the best path to the lesion. We present an extraction of lumen centers from intra‐operative videos based on tracking of maximal stable regions of energy maps.
	Address	Delft; Rotterdam; Leiden; The Netherlands; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	SMIT
	Notes	IAM;			Approved	no
	Call Number	Admin @ si @ LSB2016a			Serial	2856
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	Author	Aura Hernandez-Sabate; David Rotger; Debora Gil
	Title	Image-based ECG sampling of IVUS sequences			Type	Conference Article
	Year	2008	Publication	Proc. IEEE Ultrasonics Symp. IUS 2008	Abbreviated Journal
	Volume		Issue		Pages	1330-1333
	Keywords	Longitudinal Motion; Image-based ECG-gating; Fourier analysis
	Abstract	Longitudinal motion artifacts in IntraVascular UltraSound (IVUS) sequences hinders a properly 3D reconstruction and vessel measurements. Most of current techniques base on the ECG signal to obtain a gated pullback without the longitudinal artifact by using a specific hardware or the ECG signal itself. The potential of IVUS images processing for phase retrieval still remains little explored. In this paper, we present a fast forward image-based algorithm to approach ECG sampling. Inspired on the fact that maximum and minimum lumen areas are related to end-systole and end-diastole, our cardiac phase retrieval is based on the analysis of tissue density of mass along the sequence. The comparison between automatic and manual phase retrieval (0.07 ± 0.07 mm. of error) encourages a deep validation contrasting with ECG signals.
	Address	Beijing (China)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM;MILAB			Approved	no
	Call Number	IAM @ iam @ HRG2008			Serial	1553
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	Author	Aura Hernandez-Sabate; Debora Gil
	Title	The Benefits of IVUS Dynamics for Retrieving Stable Models of Arteries			Type	Book Chapter
	Year	2012	Publication	Intravascular Ultrasound	Abbreviated Journal
	Volume		Issue		Pages	185-206
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher	Intech	Place of Publication		Editor	Yasuhiro Honda
	Language	English	Summary Language	english	Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-953-307-900-4	Medium
	Area		Expedition		Conference
	Notes	IAM; ADAS			Approved	no
	Call Number	IAM @ iam @ HeG2012			Serial	1684
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	Author	Aura Hernandez-Sabate; Debora Gil; Albert Teis
	Title	How Do Conservation Laws Define a Motion Suppression Score in In-Vivo Ivus Sequences?			Type	Conference Article
	Year	2007	Publication	Proc. IEEE Ultrasonics Symp	Abbreviated Journal
	Volume		Issue		Pages	2231-2234
	Keywords	validation standards; IVUS motion compensation; conservation laws.
	Abstract	Evaluation of arterial tissue biomechanics for diagnosis and treatment of cardiovascular diseases is an active research field in the biomedical imaging processing area. IntraVascular UltraSound (IVUS) is a unique tool for such assessment since it reflects tissue morphology and deformation. A proper quantification and visualization of both properties is hindered by vessel structures misalignments introduced by cardiac dynamics. This has encouraged development of IVUS motion compensation techniques. However, there is a lack of an objective evaluation of motion reduction ensuring a reliable clinical application This work reports a novel score, the Conservation of Density Rate (CDR), for validation of motion compensation in in-vivo pullbacks. Synthetic experiments validate the proposed score as measure of motion parameters accuracy; while results in in vivo pullbacks show its reliability in clinical cases.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	IAM @ iam @ HTG2007			Serial	1550
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	Author	Aura Hernandez-Sabate; Debora Gil; David Roche; Monica M. S. Matsumoto; Sergio S. Furuie
	Title	Inferring the Performance of Medical Imaging Algorithms			Type	Conference Article
	Year	2011	Publication	14th International Conference on Computer Analysis of Images and Patterns	Abbreviated Journal
	Volume	6854	Issue		Pages	520-528
	Keywords	Validation, Statistical Inference, Medical Imaging Algorithms.
	Abstract	Evaluation of the performance and limitations of medical imaging algorithms is essential to estimate their impact in social, economic or clinical aspects. However, validation of medical imaging techniques is a challenging task due to the variety of imaging and clinical problems involved, as well as, the difficulties for systematically extracting a reliable solely ground truth. Although specific validation protocols are reported in any medical imaging paper, there are still two major concerns: definition of standardized methodologies transversal to all problems and generalization of conclusions to the whole clinical data set. We claim that both issues would be fully solved if we had a statistical model relating ground truth and the output of computational imaging techniques. Such a statistical model could conclude to what extent the algorithm behaves like the ground truth from the analysis of a sampling of the validation data set. We present a statistical inference framework reporting the agreement and describing the relationship of two quantities. We show its transversality by applying it to validation of two different tasks: contour segmentation and landmark correspondence.
	Address	Sevilla
	Corporate Author				Thesis
	Publisher	Springer-Verlag Berlin Heidelberg	Place of Publication	Berlin	Editor	Pedro Real; Daniel Diaz-Pernil; Helena Molina-Abril; Ainhoa Berciano; Walter Kropatsch
	Language		Summary Language		Original Title
	Series Editor		Series Title	L	Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	CAIP
	Notes	IAM; ADAS			Approved	no
	Call Number	IAM @ iam @ HGR2011			Serial	1676
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	Author	Aura Hernandez-Sabate; Debora Gil; Jaume Garcia; Enric Marti
	Title	Image-based Cardiac Phase Retrieval in Intravascular Ultrasound Sequences			Type	Journal Article
	Year	2011	Publication	IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control	Abbreviated Journal	T-UFFC
	Volume	58	Issue	1	Pages	60-72
	Keywords	3-D exploring; ECG; band-pass filter; cardiac motion; cardiac phase retrieval; coronary arteries; electrocardiogram signal; image intensity local mean evolution; image-based cardiac phase retrieval; in vivo pullbacks acquisition; intravascular ultrasound sequences; longitudinal motion; signal extrema; time 36 ms; band-pass filters; biomedical ultrasonics; cardiovascular system; electrocardiography; image motion analysis; image retrieval; image sequences; medical image processing; ultrasonic imaging
	Abstract	Longitudinal motion during in vivo pullbacks acquisition of intravascular ultrasound (IVUS) sequences is a major artifact for 3-D exploring of coronary arteries. Most current techniques are based on the electrocardiogram (ECG) signal to obtain a gated pullback without longitudinal motion by using specific hardware or the ECG signal itself. We present an image-based approach for cardiac phase retrieval from coronary IVUS sequences without an ECG signal. A signal reflecting cardiac motion is computed by exploring the image intensity local mean evolution. The signal is filtered by a band-pass filter centered at the main cardiac frequency. Phase is retrieved by computing signal extrema. The average frame processing time using our setup is 36 ms. Comparison to manually sampled sequences encourages a deeper study comparing them to ECG signals.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0885-3010	ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM;ADAS			Approved	no
	Call Number	IAM @ iam @ HGG2011			Serial	1546
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