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Jorge Bernal, Joan M. Nuñez, F. Javier Sanchez, & Fernando Vilariño. (2014). "Polyp Segmentation Method in Colonoscopy Videos by means of MSA-DOVA Energy Maps Calculation " In 3rd MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging (Vol. 8680, pp. 41–49).
Abstract: In this paper we present a novel polyp region segmentation method for colonoscopy videos. Our method uses valley information associated to polyp boundaries in order to provide an initial segmentation. This first segmentation is refined to eliminate boundary discontinuities caused by image artifacts or other elements of the scene. Experimental results over a publicly annotated database show that our method outperforms both general and specific segmentation methods by providing more accurate regions rich in polyp content. We also prove how image preprocessing is needed to improve final polyp region segmentation.
Keywords: Image segmentation; Polyps; Colonoscopy; Valley information; Energy maps
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Fernando Vilariño. (2019)." Public Libraries Exploring how technology transforms the cultural experience of people" In Workshop on Social Impact of AI. Open Living Lab Days Conference..
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Fernando Vilariño, & Gerard Lacey. (2009)." QUALITY ASSESSMENT IN COLONOSCOPY New challenges through computer vision-based systems" In in Proc. 3rd International Conference on Biomedical Electronics and Devices.
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2010). "Reduction of Pattern Search Area in Colonoscopy Images by Merging Non-Informative Regions " In 28th Congreso Anual de la Sociedad Española de Ingeniería Biomédica.
Abstract: One of the first usual steps in pattern recognition schemas is image segmentation, in order to reduce the dimensionality of the problem and manage smaller quantity of data. In our case as we are pursuing real-time colon cancer polyp detection, this step is crucial. In this paper we present a non-informative region estimation algorithm that will let us discard some parts of the image where we will not expect to find colon cancer polyps. The performance of our approach will be measured in terms of both non-informative areas elimination and polyps’ areas preserving. The results obtained show the importance of having correct non- informative region estimation in order to fasten the whole recognition process.
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Fernando Vilariño, Ludmila I. Kuncheva, & Petia Radeva. (2006). "ROC curves and video analysis optimization in intestinal capsule endoscopy " . Pattern Recognition Letters, 27(8), 875–881.
Abstract: Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions.
Keywords: ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy
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Stefan Ameling, Stephan Wirth, Dietrich Paulus, Gerard Lacey, & Fernando Vilariño. (2009)." Texture-based Polyp Detection in Colonoscopy" . Proc. BILDVERARBEITUNG FÜR DIE MEDIZIN, .
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Fernando Vilariño, Dan Norton, & Onur Ferhat. (2016)." The Eye Doesn't Click – Eyetracking and Digital Content Interaction" In 4S/EASST Conference.
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Fernando Vilariño, & Dimosthenis Karatzas. (2015)." The Library Living Lab" In Open Living Lab Days.
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2012). "Towards Automatic Polyp Detection with a Polyp Appearance Model " . Pattern Recognition, 45(9), 3166–3182.
Abstract: This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.
Keywords: Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot
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Jorge Bernal, Fernando Vilariño, & F. Javier Sanchez. (2011). "Towards Intelligent Systems for Colonoscopy " In Paul Miskovitz (Ed.), Colonoscopy (Vol. 1, pp. 257–282). Intech.
Abstract: In this chapter we present tools that can be used to build intelligent systems for colonoscopy.
The idea is, by using methods based on computer vision and artificial intelligence, add significant value to the colonoscopy procedure. Intelligent systems are being used to assist in other medical interventions
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Fernando Vilariño. (2020)." Unveiling the Social Impact of AI" In Workshop at Digital Living Lab Days Conference.
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Fernando Vilariño, & Dan Norton. (2017)." Using mutimedia tools to spread poetry collections" In Internet librarian International Conference.
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Gloria Fernandez Esparrach, Jorge Bernal, Cristina Rodriguez de Miguel, Debora Gil, Fernando Vilariño, Henry Cordova, et al. (2016)." Utilidad de la visión por computador para la localización de pólipos pequeños y planos" In XIX Reunión Nacional de la Asociación Española de Gastroenterología, Gastroenterology Hepatology (Vol. 39, 94).
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Jorge Bernal, F. Javier Sanchez, Gloria Fernandez Esparrach, Debora Gil, Cristina Rodriguez de Miguel, & Fernando Vilariño. (2015). "WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians " . Computerized Medical Imaging and Graphics, 43, 99–111.
Abstract: We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice.
Keywords: Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection
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