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Author |
Pau Cano; Alvaro Caravaca; Debora Gil; Eva Musulen |
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Title |
Diagnosis of Helicobacter pylori using AutoEncoders for the Detection of Anomalous Staining Patterns in Immunohistochemistry Images |
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Miscellaneous |
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2023 |
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Arxiv |
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107241 |
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This work addresses the detection of Helicobacter pylori a bacterium classified since 1994 as class 1 carcinogen to humans. By its highest specificity and sensitivity, the preferred diagnosis technique is the analysis of histological images with immunohistochemical staining, a process in which certain stained antibodies bind to antigens of the biological element of interest. This analysis is a time demanding task, which is currently done by an expert pathologist that visually inspects the digitized samples.
We propose to use autoencoders to learn latent patterns of healthy tissue and detect H. pylori as an anomaly in image staining. Unlike existing classification approaches, an autoencoder is able to learn patterns in an unsupervised manner (without the need of image annotations) with high performance. In particular, our model has an overall 91% of accuracy with 86\% sensitivity, 96% specificity and 0.97 AUC in the detection of H. pylori. |
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IAM |
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Admin @ si @ CCG2023 |
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3855 |
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Author |
Pau Cano; Debora Gil; Eva Musulen |
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Title |
Towards automatic detection of helicobacter pylori in histological samples of gastric tissue |
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Conference Article |
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2023 |
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IEEE International Symposium on Biomedical Imaging |
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Cartagena de Indias; Colombia; April 2023 |
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ISBI |
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IAM |
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Admin @ si @ CGM2023 |
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3953 |
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Author |
Paula Fritzsche; C.Roig; Ana Ripoll; Emilio Luque; Aura Hernandez-Sabate |
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Title |
A Performance Prediction Methodology for Data-dependent Parallel Applications |
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Conference Article |
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Year |
2006 |
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Proceedings of the IEEE International Conference on Cluster Computing |
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1-8 |
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The increase in the use of parallel distributed architectures in order to solve large-scale scientific problems has generated the need for performance prediction for both deterministic applications and non-deterministic applications. In particular, the performance prediction of data dependent programs is an extremely challenging problem because for a specific issue the input datasets may cause different execution times. Generally, a parallel application is characterized as a collection of tasks and their interrelations. If the application is time-critical it is not enough to work with only one value per task, and consequently knowledge of the distribution of task execution times is crucial. The development of a new prediction methodology to estimate the performance of data-dependent parallel applications is the primary target of this study. This approach makes it possible to evaluate the parallel performance of an application without the need of implementation. A real data-dependent arterial structure detection application model is used to apply the methodology proposed. The predicted times obtained using the new methodology for genuine datasets are compared with predicted times that arise from using only one execution value per task. Finally, the experimental study shows that the new methodology generates more precise predictions. |
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IAM @ iam @ FRR2006 |
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1497 |
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Author |
Petia Radeva; A.Amini; J.Huang; Enric Marti |
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Title |
Deformable B-Solids and Implicit Snakes for Localization and Tracking of SPAMM MRI-Data |
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Conference Article |
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Year |
1996 |
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Workshop on Mathematical Methods in Biomedical Image Analysis |
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192-201 |
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To date, MRI-SPAMM data from different image slices have been analyzed independently. In this paper, we propose an approach for 3D tag localization and tracking of SPAMM data by a novel deformable B-solid. The solid is defined in terms of a 3D tensor product B-spline. The isoparametric curves of the B-spline solid have special importance. These are termed implicit snakes as they deform under image forces from tag lines in different image slices. The localization and tracking of tag lines is performed under constraints of continuity and smoothness of the B-solid. The framework unifies the problems of localization, and displacement fitting and interpolation into the same procedure utilizing B-spline bases for interpolation. To track motion from boundaries and restrict image forces to the myocardium, a volumetric model is employed as a pair of coupled endocardial and epicardial B-spline surfaces. To recover deformations in the LV an energy-minimization problem is posed where both tag and ... |
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San Francisco CA |
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IEEE Computer Society |
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0-8186-7368-0 |
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MMBIA ’96 |
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MILAB;IAM; |
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IAM @ iam @ RAH1996 |
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1630 |
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Author |
Petia Radeva; Amir Amini; Jintao Huang; Enric Marti |
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Title |
Deformable B-Solids: application for localization and tracking of MRI-SPAMM data |
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Report |
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Year |
1996 |
Publication |
CVC Technical Report |
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8 |
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To date, MRI-SPAMM data from different image slices have been analyzed independently. In this paper, we propose an approach for 3D tag localization and tracking of SPAMM data by a novel deformable B-solid. The solid is defined in terms of a 3D tensor product B-spline. The isoparametric curves of the B-spline solid have special importance. These are termed implicit snakes as they deform under image forces from tag lines in different image slices. The localization and tracking of tag lines is performed under constraints of continuity and smoothness of the B-solid. The framework unifies the problems of localization, and displacement fitting and interpolation into the same procedure utilizing B-spline bases for interpolation. To track motion from boundaries and restrict image forces to the myocardium, a volumetric model is employed as a pair of coupled endocardial and epicardial B-spline surfaces. To recover deformations in the LV an energy-minimization problem is posed where both tag and ... |
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CVC (UAB) |
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MILAB;IAM |
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IAM @ iam @ RHM1996 |
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1631 |
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Author |
Petia Radeva; Enric Marti |
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Title |
Facial Features Segmentation by Model-Based Snakes. |
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Miscellaneous |
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Year |
1995 |
Publication |
Trobada de Joves Investigadors, IIIA. |
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Bellaterra (Barcelona), Spain |
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MILAB; IAM |
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BCNPCL @ bcnpcl @ RaM1995a |
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130 |
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Author |
Petia Radeva; Enric Marti |
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Title |
An improved model of snakes for model-based segmentation |
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Conference Article |
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Year |
1995 |
Publication |
Proceedings of Computer Analysis of Images and Patterns |
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515-520 |
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The main advantage of segmentation by snakes consists in its ability to incorporate smoothness constraints on the detected shapes that can occur. Likewise, we propose to model snakes with other properties that reflect the information provided about the object of interest in a different extent. We consider different kinds of snakes, those searching for contours with a certain direction, those preserving an object’s model, those seeking for symmetry, those expanding open, etc. The availability of such a collection of snakes allows not only the more complete use of the knowledge about the segmented object, but also to solve some problems of the existing snakes. Our experiments on segmentation of facial features justify the usefulness of snakes with different properties. |
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CAIP |
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MILAB;IAM |
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IAM @ iam @ RaM1995b |
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1632 |
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Author |
Petia Radeva; Enric Marti |
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Title |
Facial Features Segmentation by Model-Based Snakes |
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Conference Article |
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Year |
1995 |
Publication |
International Conference on Computing Analysis and Image Processing |
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Deformable models have recently been accepted as a standard technique to segment different features in facial images. Despite they give a good approximation of the salient features in a facial image, the resulting shapes of the segmentation process seem somewhat artificial with respect to the natural feature shapes. In this paper we show that active contour models (in particular, rubber snakes) give more close and natural representation of the detected feature shape. Besides, using snakes for facial segmentation frees us from the problem of determination of the numerous weigths of deformable models. Another advantage of rubber snakes is their reduced computational cost. Our experiments using rubber snakes for segmentation of facial snapshots have shown a significant improvement compared to deformable models. |
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Bellaterra (Barcelona), Spain |
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MILAB;IAM |
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IAM @ iam @ RAM1995a |
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1633 |
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Author |
Petia Radeva; Joan Serrat; Enric Marti |
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Title |
A snake for model-based segmentation |
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Conference Article |
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1995 |
Publication |
Proc. Conf. Fifth Int Computer Vision |
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816-821 |
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snakes; elastic matching; model-based segmenta tion |
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Despite the promising results of numerous applications, the hitherto proposed snake techniques share some common problems: snake attraction by spurious edge points, snake degeneration (shrinking and attening), convergence and stability of the deformation process, snake initialization and local determination of the parameters of elasticity. We argue here that these problems can be solved only when all the snake aspects are considered. The snakes proposed here implement a new potential eld and external force in order to provide a deformation convergence, attraction by both near and far edges as well as snake behaviour selective according to the edge orientation. Furthermore, we conclude that in the case of model-based seg mentation, the internal force should include structural information about the expected snake shape. Experiments using this kind of snakes for segmenting bones in complex hand radiographs show a signicant improvement. |
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MILAB;ADAS;IAM |
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IAM @ iam @ RSM1995 |
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1634 |
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Author |
Rosa Maria Ortiz; Debora Gil; Elisa Minchole; Marta Diez-Ferrer; Noelia Cubero de Frutos |
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Title |
Classification of Confolcal Endomicroscopy Patterns for Diagnosis of Lung Cancer |
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Conference Article |
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2017 |
Publication |
18th World Conference on Lung Cancer |
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Confocal Laser Endomicroscopy (CLE) is an emerging imaging technique that allows the in-vivo acquisition of cell patterns of potentially malignant lesions. Such patterns could discriminate between inflammatory and neoplastic lesions and, thus, serve as a first in-vivo biopsy to discard cases that do not actually require a cell biopsy.
The goal of this work is to explore whether CLE images obtained during videobronchoscopy contain enough visual information to discriminate between benign and malign peripheral lesions for lung cancer diagnosis. To do so, we have performed a pilot comparative study with 12 patients (6 adenocarcinoma and 6 benign-inflammatory) using 2 different methods for CLE pattern analysis: visual analysis by 3 experts and a novel methodology that uses graph methods to find patterns in pre-trained feature spaces. Our preliminary results indicate that although visual analysis can only achieve a 60.2% of accuracy, the accuracy of the proposed unsupervised image pattern classification raises to 84.6%.
We conclude that CLE images visual information allow in-vivo detection of neoplastic lesions and graph structural analysis applied to deep-learning feature spaces can achieve competitive results. |
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Yokohama; Japan; October 2017 |
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IASLC WCLC |
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IAM; 600.096; 600.075; 600.145 |
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Admin @ si @ OGM2017 |
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3044 |
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