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Author |
Idoia Ruiz |
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Title |
Deep Metric Learning for re-identification, tracking and hierarchical novelty detection |
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2022 |
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PhD Thesis, Universitat Autonoma de Barcelona-CVC |
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Metric learning refers to the problem in machine learning of learning a distance or similarity measurement to compare data. In particular, deep metric learning involves learning a representation, also referred to as embedding, such that in the embedding space data samples can be compared based on the distance, directly providing a similarity measure. This step is necessary to perform several tasks in computer vision. It allows to perform the classification of images, regions or pixels, re-identification, out-of-distribution detection, object tracking in image sequences and any other task that requires computing a similarity score for their solution. This thesis addresses three specific problems that share this common requirement. The first one is person re-identification. Essentially, it is an image retrieval task that aims at finding instances of the same person according to a similarity measure. We first compare in terms of accuracy and efficiency, classical metric learning to basic deep learning based methods for this problem. In this context, we also study network distillation as a strategy to optimize the trade-off between accuracy and speed at inference time. The second problem we contribute to is novelty detection in image classification. It consists in detecting samples of novel classes, i.e. never seen during training. However, standard novelty detection does not provide any information about the novel samples besides they are unknown. Aiming at more informative outputs, we take advantage from the hierarchical taxonomies that are intrinsic to the classes. We propose a metric learning based approach that leverages the hierarchical relationships among classes during training, being able to predict the parent class for a novel sample in such hierarchical taxonomy. Our third contribution is in multi-object tracking and segmentation. This joint task comprises classification, detection, instance segmentation and tracking. Tracking can be formulated as a retrieval problem to be addressed with metric learning approaches. We tackle the existing difficulty in academic research that is the lack of annotated benchmarks for this task. To this matter, we introduce the problem of weakly supervised multi-object tracking and segmentation, facing the challenge of not having available ground truth for instance segmentation. We propose a synergistic training strategy that benefits from the knowledge of the supervised tasks that are being learnt simultaneously. |
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July, 2022 |
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Ph.D. thesis |
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Joan Serrat |
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978-84-124793-4-8 |
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ADAS |
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Admin @ si @ Rui2022 |
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3717 |
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Author |
Oriol Ramos Terrades; Albert Berenguel; Debora Gil |
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Title |
A Flexible Outlier Detector Based on a Topology Given by Graph Communities |
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Journal Article |
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Year |
2022 |
Publication |
Big Data Research |
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BDR |
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29 |
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100332 |
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Keywords |
Classification algorithms; Detection algorithms; Description of feature space local structure; Graph communities; Machine learning algorithms; Outlier detectors |
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Outlier detection is essential for optimal performance of machine learning methods and statistical predictive models. Their detection is especially determinant in small sample size unbalanced problems, since in such settings outliers become highly influential and significantly bias models. This particular experimental settings are usual in medical applications, like diagnosis of rare pathologies, outcome of experimental personalized treatments or pandemic emergencies. In contrast to population-based methods, neighborhood based local approaches compute an outlier score from the neighbors of each sample, are simple flexible methods that have the potential to perform well in small sample size unbalanced problems. A main concern of local approaches is the impact that the computation of each sample neighborhood has on the method performance. Most approaches use a distance in the feature space to define a single neighborhood that requires careful selection of several parameters, like the number of neighbors.
This work presents a local approach based on a local measure of the heterogeneity of sample labels in the feature space considered as a topological manifold. Topology is computed using the communities of a weighted graph codifying mutual nearest neighbors in the feature space. This way, we provide with a set of multiple neighborhoods able to describe the structure of complex spaces without parameter fine tuning. The extensive experiments on real-world and synthetic data sets show that our approach outperforms, both, local and global strategies in multi and single view settings. |
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August 28, 2022 |
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DAG; IAM; 600.140; 600.121; 600.139; 600.145; 600.159 |
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Admin @ si @ RBG2022a |
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3718 |
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Mireia Sole; Joan Blanco; Debora Gil; Oliver Valero; B. Cardenas; G. Fonseka; E. Anton; Alvaro Pascual; Richard Frodsham; Zaida Sarrate |
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Title |
Time to match; when do homologous chromosomes become closer? |
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Journal Article |
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2022 |
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Chromosoma |
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CHRO |
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In most eukaryotes, pairing of homologous chromosomes is an essential feature of meiosis that ensures homologous recombination and segregation. However, when the pairing process begins, it is still under investigation. Contrasting data exists in Mus musculus, since both leptotene DSB-dependent and preleptotene DSB-independent mechanisms have been described. To unravel this contention, we examined homologous pairing in pre-meiotic and meiotic Mus musculus cells using a threedimensional fuorescence in situ hybridization-based protocol, which enables the analysis of the entire karyotype using DNA painting probes. Our data establishes in an unambiguously manner that 73.83% of homologous chromosomes are already paired at premeiotic stages (spermatogonia-early preleptotene spermatocytes). The percentage of paired homologous chromosomes increases to 84.60% at mid-preleptotene-zygotene stage, reaching 100% at pachytene stage. Importantly, our results demonstrate a high percentage of homologous pairing observed before the onset of meiosis; this pairing does not occur randomly, as the percentage was higher than that observed in somatic cells (19.47%) and between nonhomologous chromosomes (41.1%). Finally, we have also observed that premeiotic homologous pairing is asynchronous and independent of the chromosome size, GC content, or presence of NOR regions. |
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August, 2022 |
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IAM; 601.139; 600.145; 600.096 |
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Admin @ si @ SBG2022 |
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3719 |
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Author |
Aura Hernandez-Sabate; Jose Elias Yauri; Pau Folch; Miquel Angel Piera; Debora Gil |
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Title |
Recognition of the Mental Workloads of Pilots in the Cockpit Using EEG Signals |
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Journal Article |
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Year |
2022 |
Publication |
Applied Sciences |
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APPLSCI |
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12 |
Issue |
5 |
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2298 |
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Keywords |
Cognitive states; Mental workload; EEG analysis; Neural networks; Multimodal data fusion |
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The commercial flightdeck is a naturally multi-tasking work environment, one in which interruptions are frequent come in various forms, contributing in many cases to aviation incident reports. Automatic characterization of pilots’ workloads is essential to preventing these kind of incidents. In addition, minimizing the physiological sensor network as much as possible remains both a challenge and a requirement. Electroencephalogram (EEG) signals have shown high correlations with specific cognitive and mental states, such as workload. However, there is not enough evidence in the literature to validate how well models generalize in cases of new subjects performing tasks with workloads similar to the ones included during the model’s training. In this paper, we propose a convolutional neural network to classify EEG features across different mental workloads in a continuous performance task test that partly measures working memory and working memory capacity. Our model is valid at the general population level and it is able to transfer task learning to pilot mental workload recognition in a simulated operational environment. |
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February 2022 |
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IAM; ADAS; 600.139; 600.145; 600.118 |
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Admin @ si @ HYF2022 |
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3720 |
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Author |
Debora Gil; Aura Hernandez-Sabate; Julien Enconniere; Saryani Asmayawati; Pau Folch; Juan Borrego-Carazo; Miquel Angel Piera |
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Title |
E-Pilots: A System to Predict Hard Landing During the Approach Phase of Commercial Flights |
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Journal Article |
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Year |
2022 |
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IEEE Access |
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ACCESS |
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10 |
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7489-7503 |
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More than half of all commercial aircraft operation accidents could have been prevented by executing a go-around. Making timely decision to execute a go-around manoeuvre can potentially reduce overall aviation industry accident rate. In this paper, we describe a cockpit-deployable machine learning system to support flight crew go-around decision-making based on the prediction of a hard landing event.
This work presents a hybrid approach for hard landing prediction that uses features modelling temporal dependencies of aircraft variables as inputs to a neural network. Based on a large dataset of 58177 commercial flights, the results show that our approach has 85% of average sensitivity with 74% of average specificity at the go-around point. It follows that our approach is a cockpit-deployable recommendation system that outperforms existing approaches. |
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IAM; 600.139; 600.118; 600.145 |
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Admin @ si @ GHE2022 |
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3721 |
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Author |
Giuseppe De Gregorio; Sanket Biswas; Mohamed Ali Souibgui; Asma Bensalah; Josep Llados; Alicia Fornes; Angelo Marcelli |
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Title |
A Few Shot Multi-representation Approach for N-Gram Spotting in Historical Manuscripts |
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Conference Article |
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Year |
2022 |
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Frontiers in Handwriting Recognition. International Conference on Frontiers in Handwriting Recognition (ICFHR2022) |
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13639 |
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3-12 |
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N-gram spotting; Few-shot learning; Multimodal understanding; Historical handwritten collections |
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Despite recent advances in automatic text recognition, the performance remains moderate when it comes to historical manuscripts. This is mainly because of the scarcity of available labelled data to train the data-hungry Handwritten Text Recognition (HTR) models. The Keyword Spotting System (KWS) provides a valid alternative to HTR due to the reduction in error rate, but it is usually limited to a closed reference vocabulary. In this paper, we propose a few-shot learning paradigm for spotting sequences of a few characters (N-gram) that requires a small amount of labelled training data. We exhibit that recognition of important n-grams could reduce the system’s dependency on vocabulary. In this case, an out-of-vocabulary (OOV) word in an input handwritten line image could be a sequence of n-grams that belong to the lexicon. An extensive experimental evaluation of our proposed multi-representation approach was carried out on a subset of Bentham’s historical manuscript collections to obtain some really promising results in this direction. |
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December 04 – 07, 2022; Hyderabad, India |
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LNCS |
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ICFHR |
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DAG; 600.121; 600.162; 602.230; 600.140 |
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Admin @ si @ GBS2022 |
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3733 |
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Author |
Arnau Baro; Carles Badal; Pau Torras; Alicia Fornes |
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Title |
Handwritten Historical Music Recognition through Sequence-to-Sequence with Attention Mechanism |
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Conference Article |
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2022 |
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3rd International Workshop on Reading Music Systems (WoRMS2021) |
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55-59 |
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Optical Music Recognition; Digits; Image Classification |
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Despite decades of research in Optical Music Recognition (OMR), the recognition of old handwritten music scores remains a challenge because of the variabilities in the handwriting styles, paper degradation, lack of standard notation, etc. Therefore, the research in OMR systems adapted to the particularities of old manuscripts is crucial to accelerate the conversion of music scores existing in archives into digital libraries, fostering the dissemination and preservation of our music heritage. In this paper we explore the adaptation of sequence-to-sequence models with attention mechanism (used in translation and handwritten text recognition) and the generation of specific synthetic data for recognizing old music scores. The experimental validation demonstrates that our approach is promising, especially when compared with long short-term memory neural networks. |
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July 23, 2021, Alicante (Spain) |
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WoRMS |
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DAG; 600.121; 600.162; 602.230; 600.140 |
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Admin @ si @ BBT2022 |
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3734 |
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Author |
Pau Torras; Arnau Baro; Alicia Fornes; Lei Kang |
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Title |
Improving Handwritten Music Recognition through Language Model Integration |
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Conference Article |
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2022 |
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4th International Workshop on Reading Music Systems (WoRMS2022) |
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42-46 |
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optical music recognition; historical sources; diversity; music theory; digital humanities |
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Handwritten Music Recognition, especially in the historical domain, is an inherently challenging endeavour; paper degradation artefacts and the ambiguous nature of handwriting make recognising such scores an error-prone process, even for the current state-of-the-art Sequence to Sequence models. In this work we propose a way of reducing the production of statistically implausible output sequences by fusing a Language Model into a recognition Sequence to Sequence model. The idea is leveraging visually-conditioned and context-conditioned output distributions in order to automatically find and correct any mistakes that would otherwise break context significantly. We have found this approach to improve recognition results to 25.15 SER (%) from a previous best of 31.79 SER (%) in the literature. |
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November 18, 2022 |
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DAG; 600.121; 600.162; 602.230 |
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Admin @ si @ TBF2022 |
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3735 |
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Mohamed Ali Souibgui; Alicia Fornes; Yousri Kessentini; Beata Megyesi |
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Few shots are all you need: A progressive learning approach for low resource handwritten text recognition |
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2022 |
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Pattern Recognition Letters |
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PRL |
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160 |
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43-49 |
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Handwritten text recognition in low resource scenarios, such as manuscripts with rare alphabets, is a challenging problem. In this paper, we propose a few-shot learning-based handwriting recognition approach that significantly reduces the human annotation process, by requiring only a few images of each alphabet symbols. The method consists of detecting all the symbols of a given alphabet in a textline image and decoding the obtained similarity scores to the final sequence of transcribed symbols. Our model is first pretrained on synthetic line images generated from an alphabet, which could differ from the alphabet of the target domain. A second training step is then applied to reduce the gap between the source and the target data. Since this retraining would require annotation of thousands of handwritten symbols together with their bounding boxes, we propose to avoid such human effort through an unsupervised progressive learning approach that automatically assigns pseudo-labels to the unlabeled data. The evaluation on different datasets shows that our model can lead to competitive results with a significant reduction in human effort. The code will be publicly available in the following repository: https://github.com/dali92002/HTRbyMatching |
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Elsevier |
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DAG; 600.121; 600.162; 602.230 |
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Admin @ si @ SFK2022 |
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3736 |
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Joana Maria Pujadas-Mora; Alicia Fornes; Oriol Ramos Terrades; Josep Llados; Jialuo Chen; Miquel Valls-Figols; Anna Cabre |
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The Barcelona Historical Marriage Database and the Baix Llobregat Demographic Database. From Algorithms for Handwriting Recognition to Individual-Level Demographic and Socioeconomic Data |
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2022 |
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Historical Life Course Studies |
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HLCS |
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12 |
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99-132 |
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Individual demographic databases; Computer vision, Record linkage; Social mobility; Inequality; Migration; Word spotting; Handwriting recognition; Local censuses; Marriage Licences |
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The Barcelona Historical Marriage Database (BHMD) gathers records of the more than 600,000 marriages celebrated in the Diocese of Barcelona and their taxation registered in Barcelona Cathedral's so-called Marriage Licenses Books for the long period 1451–1905 and the BALL Demographic Database brings together the individual information recorded in the population registers, censuses and fiscal censuses of the main municipalities of the county of Baix Llobregat (Barcelona). In this ongoing collection 263,786 individual observations have been assembled, dating from the period between 1828 and 1965 by December 2020. The two databases started as part of different interdisciplinary research projects at the crossroads of Historical Demography and Computer Vision. Their construction uses artificial intelligence and computer vision methods as Handwriting Recognition to reduce the time of execution. However, its current state still requires some human intervention which explains the implemented crowdsourcing and game sourcing experiences. Moreover, knowledge graph techniques have allowed the application of advanced record linkage to link the same individuals and families across time and space. Moreover, we will discuss the main research lines using both databases developed so far in historical demography. |
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June 23, 2022 |
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DAG; 600.121; 600.162; 602.230; 600.140 |
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Admin @ si @ PFR2022 |
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3737 |
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Asma Bensalah; Alicia Fornes; Cristina Carmona_Duarte; Josep Llados |
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Title |
Easing Automatic Neurorehabilitation via Classification and Smoothness Analysis |
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Conference Article |
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2022 |
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Intertwining Graphonomics with Human Movements. 20th International Conference of the International Graphonomics Society, IGS 2022 |
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13424 |
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336-348 |
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Neurorehabilitation; Upper-lim; Movement classification; Movement smoothness; Deep learning; Jerk |
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Assessing the quality of movements for post-stroke patients during the rehabilitation phase is vital given that there is no standard stroke rehabilitation plan for all the patients. In fact, it depends basically on the patient’s functional independence and its progress along the rehabilitation sessions. To tackle this challenge and make neurorehabilitation more agile, we propose an automatic assessment pipeline that starts by recognising patients’ movements by means of a shallow deep learning architecture, then measuring the movement quality using jerk measure and related measures. A particularity of this work is that the dataset used is clinically relevant, since it represents movements inspired from Fugl-Meyer a well common upper-limb clinical stroke assessment scale for stroke patients. We show that it is possible to detect the contrast between healthy and patients movements in terms of smoothness, besides achieving conclusions about the patients’ progress during the rehabilitation sessions that correspond to the clinicians’ findings about each case. |
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June 7-9, 2022, Las Palmas de Gran Canaria, Spain |
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IGS |
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DAG; 600.121; 600.162; 602.230; 600.140 |
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Admin @ si @ BFC2022 |
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3738 |
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Author |
Alicia Fornes; Asma Bensalah; Cristina Carmona_Duarte; Jialuo Chen; Miguel A. Ferrer; Andreas Fischer; Josep Llados; Cristina Martin; Eloy Opisso; Rejean Plamondon; Anna Scius-Bertrand; Josep Maria Tormos |
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Title |
The RPM3D Project: 3D Kinematics for Remote Patient Monitoring |
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Conference Article |
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Year |
2022 |
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Intertwining Graphonomics with Human Movements. 20th International Conference of the International Graphonomics Society, IGS 2022 |
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13424 |
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217-226 |
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Healthcare applications; Kinematic; Theory of Rapid Human Movements; Human activity recognition; Stroke rehabilitation; 3D kinematics |
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Abstract |
This project explores the feasibility of remote patient monitoring based on the analysis of 3D movements captured with smartwatches. We base our analysis on the Kinematic Theory of Rapid Human Movement. We have validated our research in a real case scenario for stroke rehabilitation at the Guttmann Institute (https://www.guttmann.com/en/) (neurorehabilitation hospital), showing promising results. Our work could have a great impact in remote healthcare applications, improving the medical efficiency and reducing the healthcare costs. Future steps include more clinical validation, developing multi-modal analysis architectures (analysing data from sensors, images, audio, etc.), and exploring the application of our technology to monitor other neurodegenerative diseases. |
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June 7-9, 2022, Las Palmas de Gran Canaria, Spain |
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DAG; 600.121; 600.162; 602.230; 600.140 |
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Admin @ si @ FBC2022 |
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3739 |
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Author |
Arnau Baro; Pau Riba; Alicia Fornes |
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Title |
Musigraph: Optical Music Recognition Through Object Detection and Graph Neural Network |
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Conference Article |
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Year |
2022 |
Publication |
Frontiers in Handwriting Recognition. International Conference on Frontiers in Handwriting Recognition (ICFHR2022) |
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13639 |
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171-184 |
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Object detection; Optical music recognition; Graph neural network |
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During the last decades, the performance of optical music recognition has been increasingly improving. However, and despite the 2-dimensional nature of music notation (e.g. notes have rhythm and pitch), most works treat musical scores as a sequence of symbols in one dimension, which make their recognition still a challenge. Thus, in this work we explore the use of graph neural networks for musical score recognition. First, because graphs are suited for n-dimensional representations, and second, because the combination of graphs with deep learning has shown a great performance in similar applications. Our methodology consists of: First, we will detect each isolated/atomic symbols (those that can not be decomposed in more graphical primitives) and the primitives that form a musical symbol. Then, we will build the graph taking as root node the notehead and as leaves those primitives or symbols that modify the note’s rhythm (stem, beam, flag) or pitch (flat, sharp, natural). Finally, the graph is translated into a human-readable character sequence for a final transcription and evaluation. Our method has been tested on more than five thousand measures, showing promising results. |
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December 04 – 07, 2022; Hyderabad, India |
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DAG; 600.162; 600.140; 602.230 |
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Admin @ si @ BRF2022b |
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3740 |
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Author |
Carlos Boned Riera; Oriol Ramos Terrades |
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Title |
Discriminative Neural Variational Model for Unbalanced Classification Tasks in Knowledge Graph |
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Conference Article |
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Year |
2022 |
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26th International Conference on Pattern Recognition |
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2186-2191 |
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Measurement; Couplings; Semantics; Ear; Benchmark testing; Data models; Pattern recognition |
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Nowadays the paradigm of link discovery problems has shown significant improvements on Knowledge Graphs. However, method performances are harmed by the unbalanced nature of this classification problem, since many methods are easily biased to not find proper links. In this paper we present a discriminative neural variational auto-encoder model, called DNVAE from now on, in which we have introduced latent variables to serve as embedding vectors. As a result, the learnt generative model approximate better the underlying distribution and, at the same time, it better differentiate the type of relations in the knowledge graph. We have evaluated this approach on benchmark knowledge graph and Census records. Results in this last data set are quite impressive since we reach the highest possible score in the evaluation metrics. However, further experiments are still needed to deeper evaluate the performance of the method in more challenging tasks. |
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Montreal; Quebec; Canada; August 2022 |
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ICPR |
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DAG; 600.121; 600.162 |
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Admin @ si @ BoR2022 |
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3741 |
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Author |
Penny Tarling; Mauricio Cantor; Albert Clapes; Sergio Escalera |
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Title |
Deep learning with self-supervision and uncertainty regularization to count fish in underwater images |
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Journal Article |
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2022 |
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PloS One |
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Plos |
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17 |
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5 |
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e0267759 |
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Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild Lebranche mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data. |
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Public Library of Science |
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HuPBA |
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Admin @ si @ TCC2022 |
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3743 |
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