|
|
Rozenn Dhayot, Fernando Vilariño, & Gerard Lacey. (2008). Improving the Quality of Color Colonoscopy Videos. EURASIP JIVP - EURASIP Journal on Image and Video Processing, 139429(1), 1–9.
|
|
|
|
Carles Sanchez, Jorge Bernal, Debora Gil, & F. Javier Sanchez. (2013). On-line lumen centre detection in gastrointestinal and respiratory endoscopy. In Klaus Miguel Angel and Drechsler Stefan and González Ballester Raj and Wesarg Cristina and Shekhar Marius George and Oyarzun Laura M. and L. Erdt (Ed.), Second International Workshop Clinical Image-Based Procedures (Vol. 8361, pp. 31–38). LNCS. Springer International Publishing.
Abstract: We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %).
Keywords: Lumen centre detection; Bronchoscopy; Colonoscopy
|
|
|
|
Carles Sanchez, F. Javier Sanchez, Antoni Rosell, & Debora Gil. (2012). An illumination model of the trachea appearance in videobronchoscopy images. In Image Analysis and Recognition (Vol. 7325, pp. 313–320). LNCS. Springer Berlin Heidelberg.
Abstract: Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
Keywords: Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
|
|
|
|
Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). A Region Segmentation Method for Colonoscopy Images Using a Model of Polyp Appearance. In Mario João and Hernández J. and S. Vitrià (Ed.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 134–143 ). LNCS.
Abstract: This work aims at the segmentation of colonoscopy images into a minimum number of informative regions. Our method performs in a way such, if a polyp is present in the image, it will be exclusively and totally contained in a single region. This result can be used in later stages to classify regions as polyp-containing candidates. The output of the algorithm also defines which regions can be considered as non-informative. The algorithm starts with a high number of initial regions and merges them taking into account the model of polyp appearance obtained from available data. The results show that our segmentations of polyp regions are more accurate than state-of-the-art methods.
Keywords: Colonoscopy, Polyp Detection, Region Merging, Region Segmentation.
|
|
|
|
Farhan Riaz, Fernando Vilariño, Mario Dinis-Ribeiro, & Miguel Coimbraln. (2011). Identifying Potentially Cancerous Tissues in Chromoendoscopy Images. In and M. Hernandez J. M. S. J. Vitria (Ed.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 709–716). LNCS. Berlin: Springer.
Abstract: The dynamics of image acquisition conditions for gastroenterology imaging scenarios pose novel challenges for automatic computer assisted decision systems. Such systems should have the ability to mimic the tissue characterization of the physicians. In this paper, our objective is to compare some feature extraction methods to classify a Chromoendoscopy image into two different classes: Normal and Potentially cancerous. Results show that LoG filters generally give best classification accuracy among the other feature extraction methods considered.
Keywords: Endoscopy, Computer Assisted Diagnosis, Gradient.
|
|
|
|
Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy. In In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging (Vol. 6668, pp. 76–83). Lecture Notes in Computer Science. Springer Link.
Abstract: This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information.
|
|
|
|
Santiago Segui, Laura Igual, Fernando Vilariño, Petia Radeva, Carolina Malagelada, Fernando Azpiroz, et al. (2008). Diagnostic System for Intestinal Motility Disfunctions Using Video Capsule Endoscopy. In and J.K. Tsotsos M. V. A. Gasteratos (Ed.), Computer Vision Systems. 6th International (Vol. 5008, 251–260). LNCS. Berlin Heidelberg: Springer-Verlag.
Abstract: Wireless Video Capsule Endoscopy is a clinical technique consisting of the analysis of images from the intestine which are pro- vided by an ingestible device with a camera attached to it. In this paper we propose an automatic system to diagnose severe intestinal motility disfunctions using the video endoscopy data. The system is based on the application of computer vision techniques within a machine learn- ing framework in order to obtain the characterization of diverse motil- ity events from video sequences. We present experimental results that demonstrate the effectiveness of the proposed system and compare them with the ground-truth provided by the gastroenterologists.
|
|
|
|
Fernando Vilariño, Panagiota Spyridonos, Jordi Vitria, Carolina Malagelada, & Petia Radeva. (2006). Linear Radial Patterns Characterization for Automatic Detection of Tonic Intestinal Contractions. In .F. Mart ́ınez-Trinidad et al (Ed.), 11th Iberoamerican Congress on Pattern Recognition (Vol. 4225, 178–187). LNCS. Berlin Heidelberg: Springer Verlag.
Abstract: This work tackles the categorization of general linear radial patterns by means of the valleys and ridges detection and the use of descriptors of directional information, which are provided by steerable filters in different regions of the image. We successfully apply our proposal in the specific case of automatic detection of tonic contractions in video capsule endoscopy, which represent a paradigmatic example of linear radial patterns.
|
|
|
|
Fernando Vilariño, Panagiota Spyridonos, Jordi Vitria, Carolina Malagelada, & Petia Radeva. (2006). A Machine Learning framework using SOMs: Applications in the Intestinal Motility Assessment. In J.P. Martinez–Trinidad et al (Ed.), 11th Iberoamerican Congress on Pattern Recognition (Vol. 4225, 188–197). LNCS. Berlin-Heidelberg: Springer Verlag.
Abstract: Small Bowel Motility Assessment by means of Wireless Capsule Video Endoscopy constitutes a novel clinical methodology in which a capsule with a micro-camera attached to it is swallowed by the patient, emitting a RF signal which is recorded as a video of its trip throughout the gut. In order to overcome the main drawbacks associated with this technique -mainly related to the large amount of visualization time required-, our efforts have been focused on the development of a machine learning system, built up in sequential stages, which provides the specialists with the useful part of the video, rejecting those parts not valid for analysis. We successfully used Self Organized Maps in a general semi-supervised framework with the aim of tackling the different learning stages of our system. The analysis of the diverse types of images and the automatic detection of intestinal contractions is performed under the perspective of intestinal motility assessment in a clinical environment.
|
|
|
|
Panagiota Spyridonos, Fernando Vilariño, Jordi Vitria, Fernando Azpiroz, & Petia Radeva. (2006). Anisotropic Feature Extraction from Endoluminal Images for Detection of Intestinal Contractions. In and J. Sporring M. N. R. Larsen (Ed.), 9th International Conference on Medical Image Computing and Computer–Assisted Intervention (Vol. 4191, 161–168). LNCS. Berlin Heidelberg: Springer Verlag.
Abstract: Wireless endoscopy is a very recent and at the same time unique technique allowing to visualize and study the occurrence of con- tractions and to analyze the intestine motility. Feature extraction is es- sential for getting efficient patterns to detect contractions in wireless video endoscopy of small intestine. We propose a novel method based on anisotropic image filtering and efficient statistical classification of con- traction features. In particular, we apply the image gradient tensor for mining informative skeletons from the original image and a sequence of descriptors for capturing the characteristic pattern of contractions. Fea- tures extracted from the endoluminal images were evaluated in terms of their discriminatory ability in correct classifying images as either belong- ing to contractions or not. Classification was performed by means of a support vector machine classifier with a radial basis function kernel. Our classification rates gave sensitivity of the order of 90.84% and specificity of the order of 94.43% respectively. These preliminary results highlight the high efficiency of the selected descriptors and support the feasibility of the proposed method in assisting the automatic detection and analysis of contractions.
|
|
|
|
Mirko Arnold, Anarta Ghosh, Stephen Ameling, & G Lacey. (2010). Automatic segmentation and inpainting of specular highlights for endoscopic imaging. EURASIP JIVP - EURASIP Journal on Image and Video Processing, 2010(9).
|
|
|
|
Mirko Arnold, Stephan Ameling, Anarta Ghosh, & Gerard Lacey. (2011). Quality Improvement of Endoscopy Videos. In Proceedings of the 8th IASTED International Conference on Biomedical Engineering (Vol. 723).
|
|
|
|
Jorge Bernal, Fernando Vilariño, & F. Javier Sanchez. (2010). Feature Detectors and Feature Descriptors: Where We Are Now (Vol. 154).
Abstract: Feature Detection and Feature Description are clearly nowadays topics. Many Computer Vision applications rely on the use of several of these techniques in order to extract the most significant aspects of an image so they can help in some tasks such as image retrieval, image registration, object recognition, object categorization and texture classification, among others. In this paper we define what Feature Detection and Description are and then we present an extensive collection of several methods in order to show the different techniques that are being used right now. The aim of this report is to provide a glimpse of what is being used currently in these fields and to serve as a starting point for future endeavours.
|
|
|
|
Jorge Bernal. (2009). Use of Projection and Back-projection Methods in Bidimensional Computed Tomography Image Reconstruction (Vol. 141). Master's thesis, , Barcelona, Spain.
Abstract: One of the biggest drawbacks related to the use of CT scanners is the cost (in memory and in time) associated. In this project many methods to simulate their functioning, but in a more feasible way (taking an industrial point of view), will be studied.
The main group of techniques that are being used are the one entitled as ’back-projection’. The concept behind is to simulate the X ray emission in CT scans by lines that cross with the image we want to reconstruct.
In the first part of this document euclidean geometry is used to face the tasks of projec- tion and back-projection. After analysing the results achieved it has been proved that this approach does not lead to a fully perfect reconstruction (and also has some other problems related to running time and memory cost). Because of this in the second part of the document ’Filtered Back-projection’ method is introduced in order to improve the results.
Filtered Back-projection methods rely on mathematical transforms (Fourier, Radon) in order to provide more accurate results that can be obtained in much less time. The main cause of this better results is the use of a filtering process before the back-projection in order to avoid high frequency-caused errors.
As a result of this project two different implementations (one for each approach) had been implemented in order to compare their performance.
Keywords: Projection, Back-projection, CT scan, Euclidean geometry, Radon transform
|
|
|
|
Fernando Vilariño, Stephan Ameling, Gerard Lacey, Stephen Patchett, & Hugh Mulcahy. (2009). Eye Tracking Search Patterns in Expert and Trainee Colonoscopists: A Novel Method of Assessing Endoscopic Competency? GI - Gastrointestinal Endoscopy, 69(5), 370.
|
|
