Abstract: Wireless Capsule Endoscopy (WCE) is a technique for inner-visualization of the entire small intestine and, thus, offers an interesting perspective on intestinal motility. The two major drawbacks of this technique are: 1) huge amount of data acquired by WCE makes the motility analysis tedious and 2) since the capsule is the first tool that offers complete inner-visualization of the small intestine,the exact importance of the observed events is still an open issue. Therefore, in this thesis, a novel computer-aided system for intestinal motility analysis is presented. The goal of the system is to provide an easily-comprehensible visual description of motility-related intestinal events to a physician. In order to do so, several tools based either on computer vision concepts or on machine learning techniques are presented. A method for transforming 3D video signal to a holistic image of intestinal motility, called motility bar, is proposed. The method calculates the optimal mapping from video into image from the intestinal motility point of view.
To characterize intestinal motility, methods for automatic extraction of motility information from WCE are presented. Two of them are based on the motility bar and two of them are based on frame-per-frame analysis. In particular, four algorithms dealing with the problems of intestinal contraction detection, lumen size estimation, intestinal content characterization and wrinkle frame detection are proposed and validated. The results of the algorithms are converted into sequential features using an online statistical test. This test is designed to work with multivariate data streams. To this end, we propose a novel formulation of concentration inequality that is introduced into a robust adaptive windowing algorithm for multivariate data streams. The algorithm is used to obtain robust representation of segments with constant intestinal motility activity. The obtained sequential features are shown to be discriminative in the problem of abnormal motility characterization.
Finally, we tackle the problem of efficient labeling. To this end, we incorporate active learning concepts to the problems present in WCE data and propose two approaches. The first one is based the concepts of sequential learning and the second one adapts the partition-based active learning to an error-free labeling scheme. All these steps are sufficient to provide an extensive visual description of intestinal motility that can be used by an expert as decision support system.

Abstract: This paper presents a set of on-line software tools for creating ground truth and calculating performance evaluation metrics for text extraction tasks such as localization, segmentation and recognition. The platform supports the definition of comprehensive ground truth information at different text representation levels while it offers centralised management and quality control of the ground truthing effort. It implements a range of state of the art performance evaluation algorithms and offers functionality for the definition of evaluation scenarios, on-line calculation of various performance metrics and visualisation of the results. The
presented platform, which comprises the backbone of the ICDAR 2011 (challenge 1) and 2013 (challenges 1 and 2) Robust Reading competitions, is now made available for public use.

Abstract: Resting-State fMRI (RS-fMRI) is a brain imaging technique useful for exploring functional connectivity. A major point of interest in RS-fMRI analysis is to isolate connectivity patterns characterising disorders such as for instance ADHD. Such characterisation is usually performed in two steps: first, all connectivity patterns in the data are extracted by means of Independent Component Analysis (ICA); second, standard statistical tests are performed over the extracted patterns to find differences between control and clinical groups. In this work we introduce a novel, single-step, approach for this problem termed Spatial Discriminant ICA. The algorithm can efficiently isolate networks of functional connectivity characterising a clinical group by combining ICA and a new variant of the Fisher’s Linear Discriminant also introduced in this work. As the characterisation is carried out in a single step, it potentially provides for a richer characterisation of inter-class differences. The algorithm is tested using synthetic and real fMRI data, showing promising results in both experiments.

Abstract: Autonomous driving is a key factor for future mobility. Properly perceiving the environment of the vehicles is essential for a safe driving, which requires computing accurate geometric and semantic information in real-time. In this paper, we challenge state-of-the-art computer vision algorithms for building a perception system for autonomous driving. An inherent drawback in the computation of visual semantics is the trade-off between accuracy and computational cost. We propose to circumvent this problem by following an offline-online strategy. During the offline stage dense 3D semantic maps are created. In the online stage the current driving area is recognized in the maps via a re-localization process, which allows to retrieve the pre-computed accurate semantics and 3D geometry in realtime. Then, detecting the dynamic obstacles we obtain a rich understanding of the current scene. We evaluate quantitatively our proposal in the KITTI dataset and discuss the related open challenges for the computer vision community.

Abstract: Intrinsic characterization of scenes is often the best way to overcome the illumination variability artifacts that complicate most computer vision problems, from 3D reconstruction to object or material recognition. This paper examines the deficiency of existing intrinsic image models to accurately account for the effects of illuminant color and sensor characteristics in the estimation of intrinsic images and presents a generic framework which incorporates insights from color constancy research to the intrinsic image decomposition problem. The proposed mathematical formulation includes information about the color of the illuminant and the effects of the camera sensors, both of which modify the observed color of the reflectance of the objects in the scene during the acquisition process. By modeling these effects, we get a “truly intrinsic” reflectance image, which we call absolute reflectance, which is invariant to changes of illuminant or camera sensors. This model allows us to represent a wide range of intrinsic image decompositions depending on the specific assumptions on the geometric properties of the scene configuration and the spectral properties of the light source and the acquisition system, thus unifying previous models in a single general framework. We demonstrate that even partial information about sensors improves significantly the estimated reflectance images, thus making our method applicable for a wide range of sensors. We validate our general intrinsic image framework experimentally with both synthetic data and natural images.

Abstract: The study of color vision has been aided by a whole battery of computational methods that attempt to describe the mechanisms that lead to our perception of colors in terms of the information-processing properties of the visual system. Their scope is highly interdisciplinary, linking apparently dissimilar disciplines such as mathematics, physics, computer science, neuroscience, cognitive science, and psychology. Since the sensation of color is a feature of our brains, computational approaches usually include biological features of neural systems in their descriptions, from retinal light-receptor interaction to subcortical color opponency, cortical signal decoding, and color categorization. They produce hypotheses that are usually tested by behavioral or psychophysical experiments.

Abstract: Effective information retrieval on handwritten document images has always been a challenging task, especially historical ones. In the paper, we propose a coarse-to-fine handwritten word spotting approach based on graph representation. The presented model comprises both the topological and morphological signatures of the handwriting. Skeleton-based graphs with the Shape Context labelled vertexes are established for connected components. Each word image is represented as a sequence of graphs. Aiming at developing a practical and efficient word spotting approach for large-scale historical handwritten documents, a fast and coarse comparison is first applied to prune the regions that are not similar to the query based on the graph embedding methodology. Afterwards, the query and regions of interest are compared by graph edit distance based on the Dynamic Time Warping alignment. The proposed approach is evaluated on a public dataset containing 50 pages of historical marriage license records. The results show that the proposed approach achieves a compromise between efficiency and accuracy.