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Author Jose Elias Yauri; M. Lagos; H. Vega-Huerta; P. de-la-Cruz; G.L.E Maquen-Niño; E. Condor-Tinoco edit  doi
openurl 
  Title Detection of Epileptic Seizures Based-on Channel Fusion and Transformer Network in EEG Recordings Type Journal Article
  Year 2023 Publication International Journal of Advanced Computer Science and Applications Abbreviated Journal IJACSA  
  Volume 14 Issue 5 Pages 1067-1074  
  Keywords Epilepsy; epilepsy detection; EEG; EEG channel fusion; convolutional neural network; self-attention  
  Abstract According to the World Health Organization, epilepsy affects more than 50 million people in the world, and specifically, 80% of them live in developing countries. Therefore, epilepsy has become among the major public issue for many governments and deserves to be engaged. Epilepsy is characterized by uncontrollable seizures in the subject due to a sudden abnormal functionality of the brain. Recurrence of epilepsy attacks change people’s lives and interferes with their daily activities. Although epilepsy has no cure, it could be mitigated with an appropriated diagnosis and medication. Usually, epilepsy diagnosis is based on the analysis of an electroencephalogram (EEG) of the patient. However, the process of searching for seizure patterns in a multichannel EEG recording is a visual demanding and time consuming task, even for experienced neurologists. Despite the recent progress in automatic recognition of epilepsy, the multichannel nature of EEG recordings still challenges current methods. In this work, a new method to detect epilepsy in multichannel EEG recordings is proposed. First, the method uses convolutions to perform channel fusion, and next, a self-attention network extracts temporal features to classify between interictal and ictal epilepsy states. The method was validated in the public CHB-MIT dataset using the k-fold cross-validation and achieved 99.74% of specificity and 99.15% of sensitivity, surpassing current approaches.  
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  Area Expedition Conference  
  Notes IAM Approved no  
  Call Number Admin @ si @ Serial 3856  
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Author Penny Tarling; Mauricio Cantor; Albert Clapes; Sergio Escalera edit  doi
openurl 
  Title Deep learning with self-supervision and uncertainty regularization to count fish in underwater images Type Journal Article
  Year 2022 Publication PloS One Abbreviated Journal Plos  
  Volume 17 Issue 5 Pages e0267759  
  Keywords  
  Abstract Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild Lebranche mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data.  
  Address  
  Corporate Author Thesis  
  Publisher Public Library of Science Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes HuPBA Approved no  
  Call Number Admin @ si @ TCC2022 Serial 3743  
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Author C. Alejandro Parraga; Arash Akbarinia edit   pdf
doi  openurl
  Title NICE: A Computational Solution to Close the Gap from Colour Perception to Colour Categorization Type Journal Article
  Year 2016 Publication PLoS One Abbreviated Journal Plos  
  Volume 11 Issue 3 Pages e0149538  
  Keywords  
  Abstract The segmentation of visible electromagnetic radiation into chromatic categories by the human visual system has been extensively studied from a perceptual point of view, resulting in several colour appearance models. However, there is currently a void when it comes to relate these results to the physiological mechanisms that are known to shape the pre-cortical and cortical visual pathway. This work intends to begin to fill this void by proposing a new physiologically plausible model of colour categorization based on Neural Isoresponsive Colour Ellipsoids (NICE) in the cone-contrast space defined by the main directions of the visual signals entering the visual cortex. The model was adjusted to fit psychophysical measures that concentrate on the categorical boundaries and are consistent with the ellipsoidal isoresponse surfaces of visual cortical neurons. By revealing the shape of such categorical colour regions, our measures allow for a more precise and parsimonious description, connecting well-known early visual processing mechanisms to the less understood phenomenon of colour categorization. To test the feasibility of our method we applied it to exemplary images and a popular ground-truth chart obtaining labelling results that are better than those of current state-of-the-art algorithms.  
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  Area Expedition Conference  
  Notes NEUROBIT; 600.068 Approved no  
  Call Number Admin @ si @ PaA2016a Serial 2747  
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Author David Masip; Michael S. North ; Alexander Todorov; Daniel N. Osherson edit   pdf
doi  openurl
  Title Automated Prediction of Preferences Using Facial Expressions Type Journal Article
  Year 2014 Publication PloS one Abbreviated Journal Plos  
  Volume 9 Issue 2 Pages e87434  
  Keywords  
  Abstract We introduce a computer vision problem from social cognition, namely, the automated detection of attitudes from a person's spontaneous facial expressions. To illustrate the challenges, we introduce two simple algorithms designed to predict observers’ preferences between images (e.g., of celebrities) based on covert videos of the observers’ faces. The two algorithms are almost as accurate as human judges performing the same task but nonetheless far from perfect. Our approach is to locate facial landmarks, then predict preference on the basis of their temporal dynamics. The database contains 768 videos involving four different kinds of preferences. We make it publically available.  
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  Area Expedition Conference  
  Notes OR;MV Approved no  
  Call Number Admin @ si @ MNT2014 Serial 2453  
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Author A.S. Coquel; Jean-Pascal Jacob; M. Primet; A. Demarez; Mariella Dimiccoli; T. Julou; L. Moisan; A. Lindner; H. Berry edit   pdf
doi  openurl
  Title Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect Type Journal Article
  Year 2013 Publication Plos Computational Biology Abbreviated Journal PCB  
  Volume 9 Issue 4 Pages  
  Keywords  
  Abstract Aggregates of misfolded proteins are a hallmark of many age-related diseases. Recently, they have been linked to aging of Escherichia coli (E. coli) where protein aggregates accumulate at the old pole region of the aging bacterium. Because of the potential of E. coli as a model organism, elucidating aging and protein aggregation in this bacterium may pave the way to significant advances in our global understanding of aging. A first obstacle along this path is to decipher the mechanisms by which protein aggregates are targeted to specific intercellular locations. Here, using an integrated approach based on individual-based modeling, time-lapse fluorescence microscopy and automated image analysis, we show that the movement of aging-related protein aggregates in E. coli is purely diffusive (Brownian). Using single-particle tracking of protein aggregates in live E. coli cells, we estimated the average size and diffusion constant of the aggregates. Our results provide evidence that the aggregates passively diffuse within the cell, with diffusion constants that depend on their size in agreement with the Stokes-Einstein law. However, the aggregate displacements along the cell long axis are confined to a region that roughly corresponds to the nucleoid-free space in the cell pole, thus confirming the importance of increased macromolecular crowding in the nucleoids. We thus used 3D individual-based modeling to show that these three ingredients (diffusion, aggregation and diffusion hindrance in the nucleoids) are sufficient and necessary to reproduce the available experimental data on aggregate localization in the cells. Taken together, our results strongly support the hypothesis that the localization of aging-related protein aggregates in the poles of E. coli results from the coupling of passive diffusion-aggregation with spatially non-homogeneous macromolecular crowding. They further support the importance of “soft” intracellular structuring (based on macromolecular crowding) in diffusion-based protein localization in E. coli.  
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  Corporate Author Thesis  
  Publisher Place of Publication Editor : Stanislav Shvartsman, Princeton University, United States of America  
  Language Summary Language Original Title  
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  Notes Approved no  
  Call Number Admin @ si @CJP2013 Serial 2786  
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Author Xim Cerda-Company; Xavier Otazu edit   pdf
doi  openurl
  Title Color induction in equiluminant flashed stimuli Type Journal Article
  Year 2019 Publication Journal of the Optical Society of America A Abbreviated Journal JOSA A  
  Volume 36 Issue 1 Pages 22-31  
  Keywords  
  Abstract Color induction is the influence of the surrounding color (inducer) on the perceived color of a central region. There are two different types of color induction: color contrast (the color of the central region shifts away from that of the inducer) and color assimilation (the color shifts towards the color of the inducer). Several studies on these effects have used uniform and striped surrounds, reporting color contrast and color assimilation, respectively. Other authors [J. Vis. 12(1), 22 (2012) [CrossRef] ] have studied color induction using flashed uniform surrounds, reporting that the contrast is higher for shorter flash duration. Extending their study, we present new psychophysical results using both flashed and static (i.e., non-flashed) equiluminant stimuli for both striped and uniform surrounds. Similarly to them, for uniform surround stimuli we observed color contrast, but we did not obtain the maximum contrast for the shortest (10 ms) flashed stimuli, but for 40 ms. We only observed this maximum contrast for red, green, and lime inducers, while for a purple inducer we obtained an asymptotic profile along the flash duration. For striped stimuli, we observed color assimilation only for the static (infinite flash duration) red–green surround inducers (red first inducer, green second inducer). For the other inducers’ configurations, we observed color contrast or no induction. Since other studies showed that non-equiluminant striped static stimuli induce color assimilation, our results also suggest that luminance differences could be a key factor to induce it.  
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  Area Expedition Conference  
  Notes NEUROBIT; 600.120; 600.128 Approved no  
  Call Number Admin @ si @ CeO2019 Serial 3226  
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Author Eduard Vazquez; Theo Gevers; M. Lucassen; Joost Van de Weijer; Ramon Baldrich edit  doi
openurl 
  Title Saliency of Color Image Derivatives: A Comparison between Computational Models and Human Perception Type Journal Article
  Year 2010 Publication Journal of the Optical Society of America A Abbreviated Journal JOSA A  
  Volume 27 Issue 3 Pages 613–621  
  Keywords  
  Abstract In this paper, computational methods are proposed to compute color edge saliency based on the information content of color edges. The computational methods are evaluated on bottom-up saliency in a psychophysical experiment, and on a more complex task of salient object detection in real-world images. The psychophysical experiment demonstrates the relevance of using information theory as a saliency processing model and that the proposed methods are significantly better in predicting color saliency (with a human-method correspondence up to 74.75% and an observer agreement of 86.8%) than state-of-the-art models. Furthermore, results from salient object detection confirm that an early fusion of color and contrast provide accurate performance to compute visual saliency with a hit rate up to 95.2%.  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes ISE;CIC Approved no  
  Call Number CAT @ cat @ VGL2010 Serial 1275  
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Author Joan Serrat; Ferran Diego; Felipe Lumbreras; Jose Manuel Alvarez; Antonio Lopez; C. Elvira edit   pdf
doi  openurl
  Title Dynamic Comparison of Headlights Type Journal Article
  Year 2008 Publication Journal of Automobile Engineering Abbreviated Journal  
  Volume 222 Issue 5 Pages 643–656  
  Keywords video alignment  
  Abstract  
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  Area Expedition Conference  
  Notes ADAS Approved no  
  Call Number ADAS @ adas @ SDL2008a Serial 958  
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Author Mariella Dimiccoli edit   pdf
doi  openurl
  Title Fundamentals of cone regression Type Journal
  Year 2016 Publication Journal of Statistics Surveys Abbreviated Journal  
  Volume 10 Issue Pages 53-99  
  Keywords cone regression; linear complementarity problems; proximal operators.  
  Abstract Cone regression is a particular case of quadratic programming that minimizes a weighted sum of squared residuals under a set of linear inequality constraints. Several important statistical problems such as isotonic, concave regression or ANOVA under partial orderings, just to name a few, can be considered as particular instances of the cone regression problem. Given its relevance in Statistics, this paper aims to address the fundamentals of cone regression from a theoretical and practical point of view. Several formulations of the cone regression problem are considered and, focusing on the particular case of concave regression as an example, several algorithms are analyzed and compared both qualitatively and quantitatively through numerical simulations. Several improvements to enhance numerical stability and bound the computational cost are proposed. For each analyzed algorithm, the pseudo-code and its corresponding code in Matlab are provided. The results from this study demonstrate that the choice of the optimization approach strongly impacts the numerical performances. It is also shown that methods are not currently available to solve efficiently cone regression problems with large dimension (more than many thousands of points). We suggest further research to fill this gap by exploiting and adapting classical multi-scale strategy to compute an approximate solution.  
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  Corporate Author Thesis  
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  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1935-7516 ISBN Medium  
  Area Expedition Conference  
  Notes MILAB; Approved no  
  Call Number Admin @ si @Dim2016a Serial 2783  
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Author Sonia Baeza; Debora Gil; I.Garcia Olive; M.Salcedo; J.Deportos; Carles Sanchez; Guillermo Torres; G.Moragas; Antoni Rosell edit  doi
openurl 
  Title A novel intelligent radiomic analysis of perfusion SPECT/CT images to optimize pulmonary embolism diagnosis in COVID-19 patients Type Journal Article
  Year 2022 Publication EJNMMI Physics Abbreviated Journal EJNMMI-PHYS  
  Volume 9 Issue 1, Article 84 Pages 1-17  
  Keywords  
  Abstract Background: COVID-19 infection, especially in cases with pneumonia, is associated with a high rate of pulmonary embolism (PE). In patients with contraindications for CT pulmonary angiography (CTPA) or non-diagnostic CTPA, perfusion single-photon emission computed tomography/computed tomography (Q-SPECT/CT) is a diagnostic alternative. The goal of this study is to develop a radiomic diagnostic system to detect PE based only on the analysis of Q-SPECT/CT scans.
Methods: This radiomic diagnostic system is based on a local analysis of Q-SPECT/CT volumes that includes both CT and Q-SPECT values for each volume point. We present a combined approach that uses radiomic features extracted from each scan as input into a fully connected classifcation neural network that optimizes a weighted crossentropy loss trained to discriminate between three diferent types of image patterns (pixel sample level): healthy lungs (control group), PE and pneumonia. Four types of models using diferent confguration of parameters were tested.
Results: The proposed radiomic diagnostic system was trained on 20 patients (4,927 sets of samples of three types of image patterns) and validated in a group of 39 patients (4,410 sets of samples of three types of image patterns). In the training group, COVID-19 infection corresponded to 45% of the cases and 51.28% in the test group. In the test group, the best model for determining diferent types of image patterns with PE presented a sensitivity, specifcity, positive predictive value and negative predictive value of 75.1%, 98.2%, 88.9% and 95.4%, respectively. The best model for detecting
pneumonia presented a sensitivity, specifcity, positive predictive value and negative predictive value of 94.1%, 93.6%, 85.2% and 97.6%, respectively. The area under the curve (AUC) was 0.92 for PE and 0.91 for pneumonia. When the results obtained at the pixel sample level are aggregated into regions of interest, the sensitivity of the PE increases to 85%, and all metrics improve for pneumonia.
Conclusion: This radiomic diagnostic system was able to identify the diferent lung imaging patterns and is a frst step toward a comprehensive intelligent radiomic system to optimize the diagnosis of PE by Q-SPECT/CT.
 
  Address 5 dec 2022  
  Corporate Author Thesis  
  Publisher Springer Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes IAM Approved no  
  Call Number Admin @ si @ BGG2022 Serial 3759  
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Author Wenjuan Gong; Jordi Gonzalez; Xavier Roca edit   pdf
doi  openurl
  Title Human Action Recognition based on Estimated Weak Poses Type Journal Article
  Year 2012 Publication EURASIP Journal on Advances in Signal Processing Abbreviated Journal EURASIPJ  
  Volume Issue Pages  
  Keywords  
  Abstract We present a novel method for human action recognition (HAR) based on estimated poses from image sequences. We use 3D human pose data as additional information and propose a compact human pose representation, called a weak pose, in a low-dimensional space while still keeping the most discriminative information for a given pose. With predicted poses from image features, we map the problem from image feature space to pose space, where a Bag of Poses (BOP) model is learned for the final goal of HAR. The BOP model is a modified version of the classical bag of words pipeline by building the vocabulary based on the most representative weak poses for a given action. Compared with the standard k-means clustering, our vocabulary selection criteria is proven to be more efficient and robust against the inherent challenges of action recognition. Moreover, since for action recognition the ordering of the poses is discriminative, the BOP model incorporates temporal information: in essence, groups of consecutive poses are considered together when computing the vocabulary and assignment. We tested our method on two well-known datasets: HumanEva and IXMAS, to demonstrate that weak poses aid to improve action recognition accuracies. The proposed method is scene-independent and is comparable with the state-of-art method.  
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  Series Editor Series Title Abbreviated Series Title  
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  Area Expedition Conference  
  Notes ISE Approved no  
  Call Number Admin @ si @ GGR2012 Serial 2003  
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Author Laura Igual; Agata Lapedriza; Ricard Borras edit   pdf
doi  openurl
  Title Robust Gait-Based Gender Classification using Depth Cameras Type Journal Article
  Year 2013 Publication EURASIP Journal on Advances in Signal Processing Abbreviated Journal EURASIPJ  
  Volume 37 Issue 1 Pages 72-80  
  Keywords  
  Abstract This article presents a new approach for gait-based gender recognition using depth cameras, that can run in real time. The main contribution of this study is a new fast feature extraction strategy that uses the 3D point cloud obtained from the frames in a gait cycle. For each frame, these points are aligned according to their centroid and grouped. After that, they are projected into their PCA plane, obtaining a representation of the cycle particularly robust against view changes. Then, final discriminative features are computed by first making a histogram of the projected points and then using linear discriminant analysis. To test the method we have used the DGait database, which is currently the only publicly available database for gait analysis that includes depth information. We have performed experiments on manually labeled cycles and over whole video sequences, and the results show that our method improves the accuracy significantly, compared with state-of-the-art systems which do not use depth information. Furthermore, our approach is insensitive to illumination changes, given that it discards the RGB information. That makes the method especially suitable for real applications, as illustrated in the last part of the experiments section.  
  Address  
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  Notes MILAB; OR;MV Approved no  
  Call Number Admin @ si @ ILB2013 Serial 2144  
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Author Laura Igual; Joan Carles Soliva; Antonio Hernandez; Sergio Escalera; Xavier Jimenez ; Oscar Vilarroya; Petia Radeva edit  doi
openurl 
  Title A fully-automatic caudate nucleus segmentation of brain MRI: Application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder Type Journal Article
  Year 2011 Publication BioMedical Engineering Online Abbreviated Journal BEO  
  Volume 10 Issue 105 Pages 1-23  
  Keywords Brain caudate nucleus; segmentation; MRI; atlas-based strategy; Graph Cut framework  
  Abstract Background
Accurate automatic segmentation of the caudate nucleus in magnetic resonance images (MRI) of the brain is of great interest in the analysis of developmental disorders. Segmentation methods based on a single atlas or on multiple atlases have been shown to suitably localize caudate structure. However, the atlas prior information may not represent the structure of interest correctly. It may therefore be useful to introduce a more flexible technique for accurate segmentations.

Method
We present Cau-dateCut: a new fully-automatic method of segmenting the caudate nucleus in MRI. CaudateCut combines an atlas-based segmentation strategy with the Graph Cut energy-minimization framework. We adapt the Graph Cut model to make it suitable for segmenting small, low-contrast structures, such as the caudate nucleus, by defining new energy function data and boundary potentials. In particular, we exploit information concerning the intensity and geometry, and we add supervised energies based on contextual brain structures. Furthermore, we reinforce boundary detection using a new multi-scale edgeness measure.

Results
We apply the novel CaudateCut method to the segmentation of the caudate nucleus to a new set of 39 pediatric attention-deficit/hyperactivity disorder (ADHD) patients and 40 control children, as well as to a public database of 18 subjects. We evaluate the quality of the segmentation using several volumetric and voxel by voxel measures. Our results show improved performance in terms of segmentation compared to state-of-the-art approaches, obtaining a mean overlap of 80.75%. Moreover, we present a quantitative volumetric analysis of caudate abnormalities in pediatric ADHD, the results of which show strong correlation with expert manual analysis.

Conclusion
CaudateCut generates segmentation results that are comparable to gold-standard segmentations and which are reliable in the analysis of differentiating neuroanatomical abnormalities between healthy controls and pediatric ADHD.
 
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  ISSN 1475-925X ISBN Medium  
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  Notes MILAB;HuPBA Approved no  
  Call Number Admin @ si @ ISH2011 Serial 1882  
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Author Antoni Rosell; Sonia Baeza; S. Garcia-Reina; JL. Mate; Ignasi Guasch; I. Nogueira; I. Garcia-Olive; Guillermo Torres; Carles Sanchez; Debora Gil edit  doi
openurl 
  Title Radiomics to increase the effectiveness of lung cancer screening programs. Radiolung preliminary results. Type Journal Article
  Year 2022 Publication European Respiratory Journal Abbreviated Journal ERJ  
  Volume 60 Issue 66 Pages  
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  Notes IAM Approved no  
  Call Number Admin @ si @ RBG2022c Serial 3835  
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Author David Berga; Xavier Otazu; Xose R. Fernandez-Vidal; Victor Leboran; Xose M. Pardo edit  doi
openurl 
  Title Generating Synthetic Images for Visual Attention Modeling Type Journal Article
  Year 2019 Publication Perception Abbreviated Journal PER  
  Volume 48 Issue Pages 99  
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  Notes NEUROBIT; no menciona Approved no  
  Call Number Admin @ si @ BOF2019 Serial 3309  
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