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Karim Lekadir; Alfiia Galimzianova; Angels Betriu; Maria del Mar Vila; Laura Igual; Daniel L. Rubin; Elvira Fernandez-Giraldez; Petia Radeva; Sandy Napel |
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Title |
A Convolutional Neural Network for Automatic Characterization of Plaque Composition in Carotid Ultrasound |
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Journal Article |
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Year |
2017 |
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IEEE Journal Biomedical and Health Informatics |
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J-BHI |
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21 |
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1 |
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48-55 |
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Characterization of carotid plaque composition, more specifically the amount of lipid core, fibrous tissue, and calcified tissue, is an important task for the identification of plaques that are prone to rupture, and thus for early risk estimation of cardiovascular and cerebrovascular events. Due to its low costs and wide availability, carotid ultrasound has the potential to become the modality of choice for plaque characterization in clinical practice. However, its significant image noise, coupled with the small size of the plaques and their complex appearance, makes it difficult for automated techniques to discriminate between the different plaque constituents. In this paper, we propose to address this challenging problem by exploiting the unique capabilities of the emerging deep learning framework. More specifically, and unlike existing works which require a priori definition of specific imaging features or thresholding values, we propose to build a convolutional neural network (CNN) that will automatically extract from the images the information that is optimal for the identification of the different plaque constituents. We used approximately 90 000 patches extracted from a database of images and corresponding expert plaque characterizations to train and to validate the proposed CNN. The results of cross-validation experiments show a correlation of about 0.90 with the clinical assessment for the estimation of lipid core, fibrous cap, and calcified tissue areas, indicating the potential of deep learning for the challenging task of automatic characterization of plaque composition in carotid ultrasound. |
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MILAB; no menciona |
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Admin @ si @ LGB2017 |
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2931 |
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Umut Guclu; Yagmur Gucluturk; Meysam Madadi; Sergio Escalera; Xavier Baro; Jordi Gonzalez; Rob van Lier; Marcel A. J. van Gerven |
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End-to-end semantic face segmentation with conditional random fields as convolutional, recurrent and adversarial networks |
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Miscellaneous |
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2017 |
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Arxiv |
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arXiv:1703.03305
Recent years have seen a sharp increase in the number of related yet distinct advances in semantic segmentation. Here, we tackle this problem by leveraging the respective strengths of these advances. That is, we formulate a conditional random field over a four-connected graph as end-to-end trainable convolutional and recurrent networks, and estimate them via an adversarial process. Importantly, our model learns not only unary potentials but also pairwise
potentials, while aggregating multi-scale contexts and controlling higher-order inconsistencies.
We evaluate our model on two standard benchmark datasets for semantic face segmentation, achieving state-of-the-art results on both of them. |
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HuPBA; ISE; 600.098; 600.119 |
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Admin @ si @ GGM2017 |
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2932 |
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Wenjuan Gong; Xuena Zhang; Jordi Gonzalez; Andrews Sobral; Thierry Bouwmans; Changhe Tu; El-hadi Zahzah |
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Title |
Human Pose Estimation from Monocular Images: A Comprehensive Survey |
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Journal Article |
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2016 |
Publication |
Sensors |
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SENS |
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16 |
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12 |
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1966 |
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human pose estimation; human bodymodels; generativemethods; discriminativemethods; top-down methods; bottom-up methods |
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Human pose estimation refers to the estimation of the location of body parts and how they are connected in an image. Human pose estimation from monocular images has wide applications (e.g., image indexing). Several surveys on human pose estimation can be found in the literature, but they focus on a certain category; for example, model-based approaches or human motion analysis, etc. As far as we know, an overall review of this problem domain has yet to be provided. Furthermore, recent advancements based on deep learning have brought novel algorithms for this problem. In this paper, a comprehensive survey of human pose estimation from monocular images is carried out including milestone works and recent advancements. Based on one standard pipeline for the solution of computer vision problems, this survey splits the problem into several modules: feature extraction and description, human body models, and modeling
methods. Problem modeling methods are approached based on two means of categorization in this survey. One way to categorize includes top-down and bottom-up methods, and another way includes generative and discriminative methods. Considering the fact that one direct application of human pose estimation is to provide initialization for automatic video surveillance, there are additional sections for motion-related methods in all modules: motion features, motion models, and motion-based methods. Finally, the paper also collects 26 publicly available data sets for validation and provides error measurement methods that are frequently used. |
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ISE; 600.098; 600.119 |
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Admin @ si @ GZG2016 |
Serial |
2933 |
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Anastasios Doulamis; Nikolaos Doulamis; Marco Bertini; Jordi Gonzalez; Thomas B. Moeslund |
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Title |
Introduction to the Special Issue on the Analysis and Retrieval of Events/Actions and Workflows in Video Streams |
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Journal Article |
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Year |
2016 |
Publication |
Multimedia Tools and Applications |
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MTAP |
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75 |
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22 |
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14985-14990 |
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ISE; HUPBA |
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Admin @ si @ DDB2016 |
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2934 |
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Author |
H. Martin ; Jens Fagertun; Sergio Vera; Debora Gil |
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Title |
Medial structure generation for registration of anatomical structures |
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Book Chapter |
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Year |
2017 |
Publication |
Skeletonization, Theory, Methods and Applications |
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11 |
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IAM; 600.096; 600.075; 600.145 |
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Admin @ si @ MFV2017a |
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2935 |
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Mireia Sole; Joan Blanco; Debora Gil; Oliver Valero; G. Fonseka; M. Lawrie; Francesca Vidal; Zaida Sarrate |
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Title |
Chromosome Territories in Mice Spermatogenesis: A new three-dimensional methodology of study |
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Conference Article |
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2017 |
Publication |
11th European CytoGenesis Conference |
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Florencia; Italia; July 2017 |
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ECA |
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IAM; 600.096; 600.145 |
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Admin @ si @ SBG2017a |
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2936 |
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Author |
Antonio Lopez; Atsushi Imiya; Tomas Pajdla; Jose Manuel Alvarez |
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Title |
Computer Vision in Vehicle Technology: Land, Sea & Air |
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Book Whole |
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2017 |
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161-163 |
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Summary This chapter examines different vision-based commercial solutions for real-live problems related to vehicles. It is worth mentioning the recent astonishing performance of deep convolutional neural networks (DCNNs) in difficult visual tasks such as image classification, object recognition/localization/detection, and semantic segmentation. In fact,
different DCNN architectures are already being explored for low-level tasks such as optical flow and disparity computation, and higher level ones such as place recognition. |
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John Wiley & Sons, Ltd |
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978-1-118-86807-2 |
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ADAS; 600.118 |
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Admin @ si @ LIP2017a |
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2937 |
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Author |
Marc Bolaños; Alvaro Peris; Francisco Casacuberta; Petia Radeva |
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Title |
VIBIKNet: Visual Bidirectional Kernelized Network for Visual Question Answering |
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Conference Article |
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2017 |
Publication |
8th Iberian Conference on Pattern Recognition and Image Analysis |
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Visual Qestion Aswering; Convolutional Neural Networks; Long short-term memory networks |
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In this paper, we address the problem of visual question answering by proposing a novel model, called VIBIKNet. Our model is based on integrating Kernelized Convolutional Neural Networks and Long-Short Term Memory units to generate an answer given a question about an image. We prove that VIBIKNet is an optimal trade-off between accuracy and computational load, in terms of memory and time consumption. We validate our method on the VQA challenge dataset and compare it to the top performing methods in order to illustrate its performance and speed. |
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Faro; Portugal; June 2017 |
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IbPRIA |
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MILAB; no proj |
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Admin @ si @ BPC2017 |
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2939 |
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David Vazquez; Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Antonio Lopez; Adriana Romero; Michal Drozdzal; Aaron Courville |
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Title |
A Benchmark for Endoluminal Scene Segmentation of Colonoscopy Images |
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Journal Article |
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2017 |
Publication |
Journal of Healthcare Engineering |
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JHCE |
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2040-2295 |
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Colonoscopy images; Deep Learning; Semantic Segmentation |
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Colorectal cancer (CRC) is the third cause of cancer death world-wide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss- rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aim- ing to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extended benchmark of colonoscopy image segmentation, with the hope of establishing a new strong benchmark for colonoscopy image analysis research. The proposed dataset consists of 4 relevant classes to inspect the endolumninal scene, tar- geting different clinical needs. Together with the dataset and taking advantage of advances in semantic segmentation literature, we provide new baselines by training standard fully convolutional networks (FCN). We perform a compar- ative study to show that FCN significantly outperform, without any further post-processing, prior results in endoluminal scene segmentation, especially with respect to polyp segmentation and localization. |
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ADAS; MV; 600.075; 600.085; 600.076; 601.281; 600.118 |
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VBS2017b |
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2940 |
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Author |
Carles Sanchez; Debora Gil; T. Gache; N. Koufos; Marta Diez-Ferrer; Antoni Rosell |
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Title |
SENSA: a System for Endoscopic Stenosis Assessment |
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Conference Article |
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2016 |
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28th Conference of the international Society for Medical Innovation and Technology |
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Documenting the severity of a static or dynamic Central Airway Obstruction (CAO) is crucial to establish proper diagnosis and treatment, predict possible treatment effects and better follow-up the patients. The subjective visual evaluation of a stenosis during video-bronchoscopy still remains the most common way to assess a CAO in spite of a consensus among experts for a need to standardize all calculations [1].
The Computer Vision Center in cooperation with the «Hospital de Bellvitge», has developed a System for Endoscopic Stenosis Assessment (SENSA), which computes CAO directly by analyzing standard bronchoscopic data without the need of using other imaging tecnologies. |
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Rotterdam; The Netherlands; October 2016 |
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SMIT |
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IAM; |
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Admin @ si @ SGG2016 |
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2942 |
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Carles Sanchez; Antonio Esteban Lansaque; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil |
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Towards a Videobronchoscopy Localization System from Airway Centre Tracking |
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2017 |
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12th International Conference on Computer Vision Theory and Applications |
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352-359 |
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Video-bronchoscopy; Lung cancer diagnosis; Airway lumen detection; Region tracking; Guided bronchoscopy navigation |
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Bronchoscopists use fluoroscopy to guide flexible bronchoscopy to the lesion to be biopsied without any kind of incision. Being fluoroscopy an imaging technique based on X-rays, the risk of developmental problems and cancer is increased in those subjects exposed to its application, so minimizing radiation is crucial. Alternative guiding systems such as electromagnetic navigation require specific equipment, increase the cost of the clinical procedure and still require fluoroscopy. In this paper we propose an image based guiding system based on the extraction of airway centres from intra-operative videos. Such anatomical landmarks are matched to the airway centreline extracted from a pre-planned CT to indicate the best path to the nodule. We present a
feasibility study of our navigation system using simulated bronchoscopic videos and a multi-expert validation of landmarks extraction in 3 intra-operative ultrathin explorations. |
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Porto; Portugal; February 2017 |
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VISAPP |
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IAM; 600.096; 600.075; 600.145 |
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Admin @ si @ SEB2017 |
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2943 |
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Marta Diez-Ferrer; Debora Gil; Elena Carreño; Susana Padrones; Samantha Aso; Vanesa Vicens; Noelia Cubero de Frutos; Rosa Lopez Lisbona; Carles Sanchez; Agnes Borras; Antoni Rosell |
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Positive Airway Pressure-Enhanced CT to Improve Virtual Bronchoscopic Navigation |
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2017 |
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European Respiratory Journal |
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ERJ |
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IAM |
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Admin @ si @ DGC2017b |
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3632 |
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Thanh Ha Do; Salvatore Tabbone; Oriol Ramos Terrades |
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Sparse representation over learned dictionary for symbol recognition |
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2016 |
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Signal Processing |
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SP |
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125 |
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36-47 |
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Symbol Recognition; Sparse Representation; Learned Dictionary; Shape Context; Interest Points |
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In this paper we propose an original sparse vector model for symbol retrieval task. More speci cally, we apply the K-SVD algorithm for learning a visual dictionary based on symbol descriptors locally computed around interest points. Results on benchmark datasets show that the obtained sparse representation is competitive related to state-of-the-art methods. Moreover, our sparse representation is invariant to rotation and scale transforms and also robust to degraded images and distorted symbols. Thereby, the learned visual dictionary is able to represent instances of unseen classes of symbols. |
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DAG; 600.061; 600.077 |
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Admin @ si @ DTR2016 |
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2946 |
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Quentin Angermann; Jorge Bernal; Cristina Sanchez Montes; Maroua Hammami; Gloria Fernandez Esparrach; Xavier Dray; Olivier Romain; F. Javier Sanchez; Aymeric Histace |
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Real-Time Polyp Detection in Colonoscopy Videos: A Preliminary Study For Adapting Still Frame-based Methodology To Video Sequences Analysis |
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2017 |
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31st International Congress and Exhibition on Computer Assisted Radiology and Surgery |
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Barcelona; Spain; June 2017 |
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CARS |
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MV; no menciona |
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Admin @ si @ ABS2017 |
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2947 |
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Jorge Bernal; Nima Tajkbaksh; F. Javier Sanchez; Bogdan J. Matuszewski; Hao Chen; Lequan Yu; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Sungbin Choi; Quentin Debard; Lena Maier Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez Montes; Suryakanth R. Gurudu; Gloria Fernandez Esparrach; Xavier Dray; Jianming Liang; Aymeric Histace |
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Title |
Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge |
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Journal Article |
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2017 |
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IEEE Transactions on Medical Imaging |
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TMI |
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36 |
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6 |
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1231 - 1249 |
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Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework |
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Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted
Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance. |
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MV; 600.096; 600.075 |
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Admin @ si @ BTS2017 |
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2949 |
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