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Arnau Baro. (2022). Reading Music Systems: From Deep Optical Music Recognition to Contextual Methods (Alicia Fornes, Ed.). Ph.D. thesis, IMPRIMA, .
Abstract: The transcription of sheet music into some machine-readable format can be carried out manually. However, the complexity of music notation inevitably leads to burdensome software for music score editing, which makes the whole process
very time-consuming and prone to errors. Consequently, automatic transcription systems for musical documents represent interesting tools. Document analysis is the subject that deals with the extraction and processing of documents through image and pattern recognition. It is a branch of computer vision. Taking music scores as source, the field devoted to address this task is known as Optical Music Recognition (OMR). Typically, an OMR system takes an image of a music score and automatically extracts its content into some symbolic structure such as MEI or MusicXML. In this dissertation, we have investigated different methods for recognizing a single staff section (e.g. scores for violin, flute, etc.), much in the same way as most text recognition research focuses on recognizing words appearing in a given line image. These methods are based in two different methodologies. On the one hand, we present two methods based on Recurrent Neural Networks, in particular, the Long Short-Term Memory Neural Network. On the other hand, a method based on Sequence to Sequence models is detailed. Music context is needed to improve the OMR results, just like language models and dictionaries help in handwriting recognition. For example, syntactical rules and grammars could be easily defined to cope with the ambiguities in the rhythm. In music theory, for example, the time signature defines the amount of beats per bar unit. Thus, in the second part of this dissertation, different methodologies have been investigated to improve the OMR recognition. We have explored three different methods: (a) a graphic tree-structure representation, Dendrograms, that joins, at each level, its primitives following a set of rules, (b) the incorporation of Language Models to model the probability of a sequence of tokens, and (c) graph neural networks to analyze the music scores to avoid meaningless relationships between music primitives. Finally, to train all these methodologies, and given the method-specificity of the datasets in the literature, we have created four different music datasets. Two of them are synthetic with a modern or old handwritten appearance, whereas the other two are real handwritten scores, being one of them modern and the other old. |
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Ali Furkan Biten. (2022). A Bitter-Sweet Symphony on Vision and Language: Bias and World Knowledge (Dimosthenis Karatzas, & Lluis Gomez, Eds.). Ph.D. thesis, IMPRIMA, .
Abstract: Vision and Language are broadly regarded as cornerstones of intelligence. Even though language and vision have different aims – language having the purpose of communication, transmission of information and vision having the purpose of constructing mental representations around us to navigate and interact with objects – they cooperate and depend on one another in many tasks we perform effortlessly. This reliance is actively being studied in various Computer Vision tasks, e.g. image captioning, visual question answering, image-sentence retrieval, phrase grounding, just to name a few. All of these tasks share the inherent difficulty of the aligning the two modalities, while being robust to language
priors and various biases existing in the datasets. One of the ultimate goal for vision and language research is to be able to inject world knowledge while getting rid of the biases that come with the datasets. In this thesis, we mainly focus on two vision and language tasks, namely Image Captioning and Scene-Text Visual Question Answering (STVQA). In both domains, we start by defining a new task that requires the utilization of world knowledge and in both tasks, we find that the models commonly employed are prone to biases that exist in the data. Concretely, we introduce new tasks and discover several problems that impede performance at each level and provide remedies or possible solutions in each chapter: i) We define a new task to move beyond Image Captioning to Image Interpretation that can utilize Named Entities in the form of world knowledge. ii) We study the object hallucination problem in classic Image Captioning systems and develop an architecture-agnostic solution. iii) We define a sub-task of Visual Question Answering that requires reading the text in the image (STVQA), where we highlight the limitations of current models. iv) We propose an architecture for the STVQA task that can point to the answer in the image and show how to combine it with classic VQA models. v) We show how far language can get us in STVQA and discover yet another bias which causes the models to disregard the image while doing Visual Question Answering. |
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Andres Mafla. (2022). Leveraging Scene Text Information for Image Interpretation (Dimosthenis Karatzas, & Lluis Gomez, Eds.). Ph.D. thesis, IMPRIMA, .
Abstract: Until recently, most computer vision models remained illiterate, largely ignoring the semantically rich and explicit information contained in scene text. Recent progress in scene text detection and recognition has recently allowed exploring its role in a diverse set of open computer vision problems, e.g. image classification, image-text retrieval, image captioning, and visual question answering to name a few. The explicit semantics of scene text closely requires specific modeling similar to language. However, scene text is a particular signal that has to be interpreted according to a comprehensive perspective that encapsulates all the visual cues in an image. Incorporating this information is a straightforward task for humans, but if we are unfamiliar with a language or scripture, achieving a complete world understanding is impossible (e.a. visiting a foreign country with a different alphabet). Despite the importance of scene text, modeling it requires considering the several ways in which scene text interacts with an image, processing and fusing an additional modality. In this thesis, we mainly focus
on two tasks, scene text-based fine-grained image classification, and cross-modal retrieval. In both studied tasks we identify existing limitations in current approaches and propose plausible solutions. Concretely, in each chapter: i) We define a compact way to embed scene text that generalizes to unseen words at training time while performing in real-time. ii) We incorporate the previously learned scene text embedding to create an image-level descriptor that overcomes optical character recognition (OCR) errors which is well-suited to the fine-grained image classification task. iii) We design a region-level reasoning network that learns the interaction through semantics among salient visual regions and scene text instances. iv) We employ scene text information in image-text matching and introduce the Scene Text Aware Cross-Modal retrieval StacMR task. We gather a dataset that incorporates scene text and design a model suited for the newly studied modality. v) We identify the drawbacks of current retrieval metrics in cross-modal retrieval. An image captioning metric is proposed as a way of better evaluating semantics in retrieved results. Ample experimentation shows that incorporating such semantics into a model yields better semantic results while requiring significantly less data to converge. |
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Mohamed Ali Souibgui. (2022). Document Image Enhancement and Recognition in Low Resource Scenarios: Application to Ciphers and Handwritten Text (Alicia Fornes, & Yousri Kessentini, Eds.). Ph.D. thesis, IMPRIMA, .
Abstract: In this thesis, we propose different contributions with the goal of enhancing and recognizing historical handwritten document images, especially the ones with rare scripts, such as cipher documents.
In the first part, some effective end-to-end models for Document Image Enhancement (DIE) using deep learning models were presented. First, Generative Adversarial Networks (cGAN) for different tasks (document clean-up, binarization, deblurring, and watermark removal) were explored. Next, we further improve the results by recovering the degraded document images into a clean and readable form by integrating a text recognizer into the cGAN model to promote the generated document image to be more readable. Afterward, we present a new encoder-decoder architecture based on vision transformers to enhance both machine-printed and handwritten document images, in an end-to-end fashion. The second part of the thesis addresses Handwritten Text Recognition (HTR) in low resource scenarios, i.e. when only few labeled training data is available. We propose novel methods for recognizing ciphers with rare scripts. First, a few-shot object detection based method was proposed. Then, we incorporate a progressive learning strategy that automatically assignspseudo-labels to a set of unlabeled data to reduce the human labor of annotating few pages while maintaining the good performance of the model. Secondly, a data generation technique based on Bayesian Program Learning (BPL) is proposed to overcome the lack of data in such rare scripts. Thirdly, we propose a Text-Degradation Invariant Auto Encoder (Text-DIAE). This latter self-supervised model is designed to tackle two tasks, text recognition and document image enhancement. The proposed model does not exhibit limitations of previous state-of-the-art methods based on contrastive losses, while at the same time, it requires substantially fewer data samples to converge. In the third part of the thesis, we analyze, from the user perspective, the usage of HTR systems in low resource scenarios. This contrasts with the usual research on HTR, which often focuses on technical aspects only and rarely devotes efforts on implementing software tools for scholars in Humanities. |
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Saad Minhas, Zeba Khanam, Shoaib Ehsan, Klaus McDonald Maier, & Aura Hernandez-Sabate. (2022). Weather Classification by Utilizing Synthetic Data. SENS - Sensors, 22(9), 3193.
Abstract: Weather prediction from real-world images can be termed a complex task when targeting classification using neural networks. Moreover, the number of images throughout the available datasets can contain a huge amount of variance when comparing locations with the weather those images are representing. In this article, the capabilities of a custom built driver simulator are explored specifically to simulate a wide range of weather conditions. Moreover, the performance of a new synthetic dataset generated by the above simulator is also assessed. The results indicate that the use of synthetic datasets in conjunction with real-world datasets can increase the training efficiency of the CNNs by as much as 74%. The article paves a way forward to tackle the persistent problem of bias in vision-based datasets.
Keywords: Weather classification; synthetic data; dataset; autonomous car; computer vision; advanced driver assistance systems; deep learning; intelligent transportation systems
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Ana Garcia Rodriguez, Yael Tudela, Henry Cordova, S. Carballal, I. Ordas, L. Moreira, et al. (2022). In vivo computer-aided diagnosis of colorectal polyps using white light endoscopy. ENDIO - Endoscopy International Open, 10(9), E1201–E1207.
Abstract: Background and study aims Artificial intelligence is currently able to accurately predict the histology of colorectal polyps. However, systems developed to date use complex optical technologies and have not been tested in vivo. The objective of this study was to evaluate the efficacy of a new deep learning-based optical diagnosis system, ATENEA, in a real clinical setting using only high-definition white light endoscopy (WLE) and to compare its performance with endoscopists. Methods ATENEA was prospectively tested in real life on consecutive polyps detected in colorectal cancer screening colonoscopies at Hospital Clínic. No images were discarded, and only WLE was used. The in vivo ATENEA's prediction (adenoma vs non-adenoma) was compared with the prediction of four staff endoscopists without specific training in optical diagnosis for the study purposes. Endoscopists were blind to the ATENEA output. Histology was the gold standard. Results Ninety polyps (median size: 5 mm, range: 2-25) from 31 patients were included of which 69 (76.7 %) were adenomas. ATENEA correctly predicted the histology in 63 of 69 (91.3 %, 95 % CI: 82 %-97 %) adenomas and 12 of 21 (57.1 %, 95 % CI: 34 %-78 %) non-adenomas while endoscopists made correct predictions in 52 of 69 (75.4 %, 95 % CI: 60 %-85 %) and 20 of 21 (95.2 %, 95 % CI: 76 %-100 %), respectively. The global accuracy was 83.3 % (95 % CI: 74%-90 %) and 80 % (95 % CI: 70 %-88 %) for ATENEA and endoscopists, respectively. Conclusion ATENEA can accurately be used for in vivo characterization of colorectal polyps, enabling the endoscopist to make direct decisions. ATENEA showed a global accuracy similar to that of endoscopists despite an unsatisfactory performance for non-adenomatous lesions.
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Penny Tarling, Mauricio Cantor, Albert Clapes, & Sergio Escalera. (2022). Deep learning with self-supervision and uncertainty regularization to count fish in underwater images. Plos - PloS One, 17(5), e0267759.
Abstract: Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild Lebranche mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data.
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Daniela Rato, Miguel Oliveira, Vitor Santos, Manuel Gomes, & Angel Sappa. (2022). A sensor-to-pattern calibration framework for multi-modal industrial collaborative cells. JMANUFSYST - Journal of Manufacturing Systems, 64, 497–507.
Abstract: Collaborative robotic industrial cells are workspaces where robots collaborate with human operators. In this context, safety is paramount, and for that a complete perception of the space where the collaborative robot is inserted is necessary. To ensure this, collaborative cells are equipped with a large set of sensors of multiple modalities, covering the entire work volume. However, the fusion of information from all these sensors requires an accurate extrinsic calibration. The calibration of such complex systems is challenging, due to the number of sensors and modalities, and also due to the small overlapping fields of view between the sensors, which are positioned to capture different viewpoints of the cell. This paper proposes a sensor to pattern methodology that can calibrate a complex system such as a collaborative cell in a single optimization procedure. Our methodology can tackle RGB and Depth cameras, as well as LiDARs. Results show that our methodology is able to accurately calibrate a collaborative cell containing three RGB cameras, a depth camera and three 3D LiDARs.
Keywords: Calibration; Collaborative cell; Multi-modal; Multi-sensor
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Eduardo Aguilar, Bhalaji Nagarajan, Beatriz Remeseiro, & Petia Radeva. (2022). Bayesian deep learning for semantic segmentation of food images. CEE - Computers and Electrical Engineering, 103, 108380.
Abstract: Deep learning has provided promising results in various applications; however, algorithms tend to be overconfident in their predictions, even though they may be entirely wrong. Particularly for critical applications, the model should provide answers only when it is very sure of them. This article presents a Bayesian version of two different state-of-the-art semantic segmentation methods to perform multi-class segmentation of foods and estimate the uncertainty about the given predictions. The proposed methods were evaluated on three public pixel-annotated food datasets. As a result, we can conclude that Bayesian methods improve the performance achieved by the baseline architectures and, in addition, provide information to improve decision-making. Furthermore, based on the extracted uncertainty map, we proposed three measures to rank the images according to the degree of noisy annotations they contained. Note that the top 135 images ranked by one of these measures include more than half of the worst-labeled food images.
Keywords: Deep learning; Uncertainty quantification; Bayesian inference; Image segmentation; Food analysis
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Zhen Xu, Sergio Escalera, Adrien Pavao, Magali Richard, Wei-Wei Tu, Quanming Yao, et al. (2022). Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform. PATTERNS - Patterns, 3(7), 100543.
Abstract: Obtaining a standardized benchmark of computational methods is a major issue in data-science communities. Dedicated frameworks enabling fair benchmarking in a unified environment are yet to be developed. Here, we introduce Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks. A public instance of Codabench is open to everyone free of charge and allows benchmark organizers to fairly compare submissions under the same setting (software, hardware, data, algorithms), with custom protocols and data formats. Codabench has unique features facilitating easy organization of flexible and reproducible benchmarks, such as the possibility of reusing templates of benchmarks and supplying compute resources on demand. Codabench has been used internally and externally on various applications, receiving more than 130 users and 2,500 submissions. As illustrative use cases, we introduce four diverse benchmarks covering graph machine learning, cancer heterogeneity, clinical diagnosis, and reinforcement learning.
Keywords: Machine learning; data science; benchmark platform; reproducibility; competitions
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Sonia Baeza, Debora Gil, I.Garcia Olive, M.Salcedo, J.Deportos, Carles Sanchez, et al. (2022). A novel intelligent radiomic analysis of perfusion SPECT/CT images to optimize pulmonary embolism diagnosis in COVID-19 patients. EJNMMI-PHYS - EJNMMI Physics, 9(1, Article 84), 1–17.
Abstract: Background: COVID-19 infection, especially in cases with pneumonia, is associated with a high rate of pulmonary embolism (PE). In patients with contraindications for CT pulmonary angiography (CTPA) or non-diagnostic CTPA, perfusion single-photon emission computed tomography/computed tomography (Q-SPECT/CT) is a diagnostic alternative. The goal of this study is to develop a radiomic diagnostic system to detect PE based only on the analysis of Q-SPECT/CT scans.
Methods: This radiomic diagnostic system is based on a local analysis of Q-SPECT/CT volumes that includes both CT and Q-SPECT values for each volume point. We present a combined approach that uses radiomic features extracted from each scan as input into a fully connected classifcation neural network that optimizes a weighted crossentropy loss trained to discriminate between three diferent types of image patterns (pixel sample level): healthy lungs (control group), PE and pneumonia. Four types of models using diferent confguration of parameters were tested. Results: The proposed radiomic diagnostic system was trained on 20 patients (4,927 sets of samples of three types of image patterns) and validated in a group of 39 patients (4,410 sets of samples of three types of image patterns). In the training group, COVID-19 infection corresponded to 45% of the cases and 51.28% in the test group. In the test group, the best model for determining diferent types of image patterns with PE presented a sensitivity, specifcity, positive predictive value and negative predictive value of 75.1%, 98.2%, 88.9% and 95.4%, respectively. The best model for detecting pneumonia presented a sensitivity, specifcity, positive predictive value and negative predictive value of 94.1%, 93.6%, 85.2% and 97.6%, respectively. The area under the curve (AUC) was 0.92 for PE and 0.91 for pneumonia. When the results obtained at the pixel sample level are aggregated into regions of interest, the sensitivity of the PE increases to 85%, and all metrics improve for pneumonia. Conclusion: This radiomic diagnostic system was able to identify the diferent lung imaging patterns and is a frst step toward a comprehensive intelligent radiomic system to optimize the diagnosis of PE by Q-SPECT/CT. |
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Michael Teutsch, Angel Sappa, & Riad I. Hammoud. (2022). Cross-Spectral Image Processing. In Computer Vision in the Infrared Spectrum. Synthesis Lectures on Computer Vision (pp. 23–34). SLCV. Springer.
Abstract: Although this book is on IR computer vision and its main focus lies on IR image and video processing and analysis, a special attention is dedicated to cross-spectral image processing due to the increasing number of publications and applications in this domain. In these cross-spectral frameworks, IR information is used together with information from other spectral bands to tackle some specific problems by developing more robust solutions. Tasks considered for cross-spectral processing are for instance dehazing, segmentation, vegetation index estimation, or face recognition. This increasing number of applications is motivated by cross- and multi-spectral camera setups available already on the market like for example smartphones, remote sensing multispectral cameras, or multi-spectral cameras for automotive systems or drones. In this chapter, different cross-spectral image processing techniques will be reviewed together with possible applications. Initially, image registration approaches for the cross-spectral case are reviewed: the registration stage is the first image processing task, which is needed to align images acquired by different sensors within the same reference coordinate system. Then, recent cross-spectral image colorization approaches, which are intended to colorize infrared images for different applications are presented. Finally, the cross-spectral image enhancement problem is tackled by including guided super resolution techniques, image dehazing approaches, cross-spectral filtering and edge detection. Figure 3.1 illustrates cross-spectral image processing stages as well as their possible connections. Table 3.1 presents some of the available public cross-spectral datasets generally used as reference data to evaluate cross-spectral image registration, colorization, enhancement, or exploitation results.
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Michael Teutsch, Angel Sappa, & Riad I. Hammoud. (2022). Detection, Classification, and Tracking. In Computer Vision in the Infrared Spectrum. Synthesis Lectures on Computer Vision (pp. 35–58). SLCV. Springer.
Abstract: Automatic image and video exploitation or content analysis is a technique to extract higher-level information from a scene such as objects, behavior, (inter-)actions, environment, or even weather conditions. The relevant information is assumed to be contained in the two-dimensional signal provided in an image (width and height in pixels) or the three-dimensional signal provided in a video (width, height, and time). But also intermediate-level information such as object classes [196], locations [197], or motion [198] can help applications to fulfill certain tasks such as intelligent compression [199], video summarization [200], or video retrieval [201]. Usually, videos with their temporal dimension are a richer source of data compared to single images [202] and thus certain video content can be extracted from videos only such as object motion or object behavior. Often, machine learning or nowadays deep learning techniques are utilized to model prior knowledge about object or scene appearance using labeled training samples [203, 204]. After a learning phase, these models are then applied in real world applications, which is called inference.
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Michael Teutsch, Angel Sappa, & Riad I. Hammoud. (2022). Image and Video Enhancement. In Computer Vision in the Infrared Spectrum. Synthesis Lectures on Computer Vision (pp. 9–21). SLCV. Springer.
Abstract: Image and video enhancement aims at improving the signal quality relative to imaging artifacts such as noise and blur or atmospheric perturbations such as turbulence and haze. It is usually performed in order to assist humans in analyzing image and video content or simply to present humans visually appealing images and videos. However, image and video enhancement can also be used as a preprocessing technique to ease the task and thus improve the performance of subsequent automatic image content analysis algorithms: preceding dehazing can improve object detection as shown by [23] or explicit turbulence modeling can improve moving object detection as discussed by [24]. But it remains an open question whether image and video enhancement should rather be performed explicitly as a preprocessing step or implicitly for example by feeding affected images directly to a neural network for image content analysis like object detection [25]. Especially for real-time video processing at low latency it can be better to handle image perturbation implicitly in order to minimize the processing time of an algorithm. This can be achieved by making algorithms for image content analysis robust or even invariant to perturbations such as noise or blur. Additionally, mistakes of an individual preprocessing module can obviously affect the quality of the entire processing pipeline.
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Utkarsh Porwal, Alicia Fornes, & Faisal Shafait (Eds.). (2022). Frontiers in Handwriting Recognition. International Conference on Frontiers in Handwriting Recognition. 18th International Conference, ICFHR 2022 (Vol. 13639). LNCS. Springer.
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