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Author |
Jaume Garcia; Albert Andaluz; Debora Gil; Francesc Carreras |
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Title |
Decoupled External Forces in a Predictor-Corrector Segmentation Scheme for LV Contours in Tagged MR Images |
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Conference Article |
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2010 |
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32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society |
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4805-4808 |
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Computation of functional regional scores requires proper identification of LV contours. On one hand, manual segmentation is robust, but it is time consuming and requires high expertise. On the other hand, the tag pattern in TMR sequences is a problem for automatic segmentation of LV boundaries. We propose a segmentation method based on a predictorcorrector (Active Contours – Shape Models) scheme. Special stress is put in the definition of the AC external forces. First, we introduce a semantic description of the LV that discriminates myocardial tissue by using texture and motion descriptors. Second, in order to ensure convergence regardless of the initial contour, the external energy is decoupled according to the orientation of the edges in the image potential. We have validated the model in terms of error in segmented contours and accuracy of regional clinical scores. |
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Buenos Aires (Argentina) |
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IEEE EMB |
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1557-170X |
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978-1-4244-4123-5 |
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EMBC |
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IAM @ iam @ GAG2010 |
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1514 |
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Author |
Jaume Garcia; Debora Gil; Aura Hernandez-Sabate |
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Title |
Endowing Canonical Geometries to Cardiac Structures |
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Book Chapter |
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Year |
2010 |
Publication |
Statistical Atlases And Computational Models Of The Heart |
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6364 |
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124-133 |
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International conference on Cardiac electrophysiological simulation challenge
In this paper, we show that canonical (shape-based) geometries can be endowed to cardiac structures using tubular coordinates defined over their medial axis. We give an analytic formulation of these geometries by means of B-Splines. Since B-Splines present vector space structure PCA can be applied to their control points and statistical models relating boundaries and the interior of the anatomical structures can be derived. We demonstrate the applicability in two cardiac structures, the 3D Left Ventricular volume, and the 2D Left-Right ventricle set in 2D Short Axis view. |
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Springer Berlin / Heidelberg |
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Camara, O.; Pop, M.; Rhode, K.; Sermesant, M.; Smith, N.; Young, A. |
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Lecture Notes in Computer Science |
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IAM @ iam @ GGH2010b |
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1515 |
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Author |
Debora Gil; Jaume Garcia; Aura Hernandez-Sabate; Enric Marti |
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Title |
Manifold parametrization of the left ventricle for a statistical modelling of its complete anatomy |
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Conference Article |
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Year |
2010 |
Publication |
8th Medical Imaging |
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7623 |
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762304 |
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304 |
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Distortion of Left Ventricle (LV) external anatomy is related to some dysfunctions, such as hypertrophy. The architecture of myocardial fibers determines LV electromechanical activation patterns as well as mechanics. Thus, their joined modelling would allow the design of specific interventions (such as peacemaker implantation and LV remodelling) and therapies (such as resynchronization). On one hand, accurate modelling of external anatomy requires either a dense sampling or a continuous infinite dimensional approach, which requires non-Euclidean statistics. On the other hand, computation of fiber models requires statistics on Riemannian spaces. Most approaches compute separate statistical models for external anatomy and fibers architecture. In this work we propose a general mathematical framework based on differential geometry concepts for computing a statistical model including, both, external and fiber anatomy. Our framework provides a continuous approach to external anatomy supporting standard statistics. We also provide a straightforward formula for the computation of the Riemannian fiber statistics. We have applied our methodology to the computation of complete anatomical atlas of canine hearts from diffusion tensor studies. The orientation of fibers over the average external geometry agrees with the segmental description of orientations reported in the literature. |
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SPIE |
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IAM @ iam @ GGH2010a |
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1522 |
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Author |
Ferran Poveda; Jaume Garcia; Enric Marti; Debora Gil |
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Title |
Validation of the myocardial architecture in DT-MRI tractography |
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Conference Article |
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Year |
2010 |
Publication |
Medical Image Computing in Catalunya: Graduate Student Workshop |
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29-30 |
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Deep understanding of myocardial structure may help to link form and funcion of the heart unraveling crucial knowledge for medical and surgical clinical procedures and studies. In this work we introduce two visualization techniques based on DT-MRI streamlining able to decipher interesting properties of the architectural organization of the heart. |
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Girona (Spain) |
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MICCAT |
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IAM @ iam @ PGM2010 |
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1626 |
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Author |
Sergio Vera |
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Title |
Finger joint modelling from hand X-ray images for assessing rheumatoid arthritis |
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Report |
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2010 |
Publication |
CVC Technical Report |
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164 |
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Rheumatoid arthritis; joint detection; X-ray; Van der Heijde score |
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Rheumatoid arthritis is an autoimmune, systemic, inflammatory disorder that mainly af- fects bone joints. While there is no cure for this disease, continuous advances on palliative treatments require frequent verification of patient’s illness evolution. Such evolution is mea- sured through several available semi-quantitative methods that require evaluation of hand and foot X-ray images. Accurate assessment is a time consuming task that requires highly trained personnel. This hinders a generalized use in clinical practice for early diagnose and disease follow-up. In the context of the automatization of such evaluation methods we present a method for detection and characterization of finger joints in hand radiography images. Several measures for assessing the reduction of joint space width are proposed. We compare for the first time such measures to the Van der Heijde score, the gold standard method for rheumatoid arthritis assessment. The proposed method outperforms existing strategies with a detection rate above 95%. Our comparison to Van der Heijde index shows a promising correlation that encourages further research. |
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Master's thesis |
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Bellaterra 01893, Barcelona, Spain |
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IAM @ iam @ Ver2010 |
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1661 |
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Author |
Aura Hernandez-Sabate; Monica Mitiko; Sergio Shiguemi; Debora Gil |
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Title |
A validation protocol for assessing cardiac phase retrieval in IntraVascular UltraSound |
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Conference Article |
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Year |
2010 |
Publication |
Computing in Cardiology |
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37 |
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899-902 |
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A good reliable approach to cardiac triggering is of utmost importance in obtaining accurate quantitative results of atherosclerotic plaque burden from the analysis of IntraVascular UltraSound. Although, in the last years, there has been an increase in research of methods for retrospective gating, there is no general consensus in a validation protocol. Many methods are based on quality assessment of longitudinal cuts appearance and those reporting quantitative numbers do not follow a standard protocol. Such heterogeneity in validation protocols makes faithful comparison across methods a difficult task. We propose a validation protocol based on the variability of the retrieved cardiac phase and explore the capability of several quality measures for quantifying such variability. An ideal detector, suitable for its application in clinical practice, should produce stable phases. That is, it should always sample the same cardiac cycle fraction. In this context, one should measure the variability (variance) of a candidate sampling with respect a ground truth (reference) sampling, since the variance would indicate how spread we are aiming a target. In order to quantify the deviation between the sampling and the ground truth, we have considered two quality scores reported in the literature: signed distance to the closest reference sample and distance to the right of each reference sample. We have also considered the residuals of the regression line of reference against candidate sampling. The performance of the measures has been explored on a set of synthetic samplings covering different cardiac cycle fractions and variabilities. From our simulations, we conclude that the metrics related to distances are sensitive to the shift considered while the residuals are robust against fraction and variabilities as far as one can establish a pair-wise correspondence between candidate and reference. We will further investigate the impact of false positive and negative detections in experimental data. |
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IEEE |
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0276-6547 |
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978-1-4244-7318-2 |
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CINC |
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IAM; |
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IAM @ iam @ HSM2010 |
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1551 |
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Author |
Patricia Marquez |
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Title |
Conditions Ensuring Accuracy of Local Optical Flow Schemes |
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Report |
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2010 |
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CVC Tehcnical Report |
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157 |
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Accurate computation of optical flow is a key-point in many image processing fields. Detection of anomalous and unpredicted agents (such as pedestrians, bikers or cars) in urban scenes or pathology discrimination in medical imaging sequences, to mention just a two. The above kinds sequences present two main difficulties for standard optical flow techniques. On one hand, variability in acquisition conditions (illuminance, medical imaging modality, ...) force an alterantive representation for images fulfilling the britghtness constancy constrain. On the hand, current variational schemes produce oversmoothed fields unable to properly model discontinuous behaviours such as collisions or functionless pathological areas. This master project explores the abilities and limitations of local and global optical flow approaches. The master student will put especial emphasis in the theoretical grounds behind in order to design a variational framework combining the theoretical advantages of the considered techniques. In particular an optical flow based on Gabor phase tracking (developed in the group for medical imaging) will be generalized to urban scenes. |
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Master's thesis |
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Bellaterra 08193, Barcelona, Spain |
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IAM; |
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IAM @ iam @ Mar2010 |
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1582 |
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Author |
Maurizio Mencuccini; Jordi Martinez-Vilalta; Josep Piñol; Lasse Loepfe; Mireia Burnat ; Xavier Alvarez; Juan Camacho; Debora Gil |
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Title |
A quantitative and statistically robust method for the determination of xylem conduit spatial distribution |
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Journal Article |
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Year |
2010 |
Publication |
American Journal of Botany |
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AJB |
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97 |
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8 |
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1247-1259 |
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Geyer; hydraulic conductivity; point pattern analysis; Ripley; Spatstat; vessel clusters; xylem anatomy; xylem network |
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Premise of the study: Because of their limited length, xylem conduits need to connect to each other to maintain water transport from roots to leaves. Conduit spatial distribution in a cross section plays an important role in aiding this connectivity. While indices of conduit spatial distribution already exist, they are not well defined statistically. * Methods: We used point pattern analysis to derive new spatial indices. One hundred and five cross-sectional images from different species were transformed into binary images. The resulting point patterns, based on the locations of the conduit centers-of-area, were analyzed to determine whether they departed from randomness. Conduit distribution was then modeled using a spatially explicit stochastic model. * Key results: The presence of conduit randomness, uniformity, or aggregation depended on the spatial scale of the analysis. The large majority of the images showed patterns significantly different from randomness at least at one spatial scale. A strong phylogenetic signal was detected in the spatial variables. * Conclusions: Conduit spatial arrangement has been largely conserved during evolution, especially at small spatial scales. Species in which conduits were aggregated in clusters had a lower conduit density compared to those with uniform distribution. Statistically sound spatial indices must be employed as an aid in the characterization of distributional patterns across species and in models of xylem water transport. Point pattern analysis is a very useful tool in identifying spatial patterns. |
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IAM; |
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IAM @ iam @ MMG2010 |
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1623 |
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Author |
Dani Rowe; Jordi Gonzalez; Marco Pedersoli; Juan J. Villanueva |
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Title |
On Tracking Inside Groups |
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Journal Article |
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Year |
2010 |
Publication |
Machine Vision and Applications |
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MVA |
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21 |
Issue |
2 |
Pages |
113–127 |
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This work develops a new architecture for multiple-target tracking in unconstrained dynamic scenes, which consists of a detection level which feeds a two-stage tracking system. A remarkable characteristic of the system is its ability to track several targets while they group and split, without using 3D information. Thus, special attention is given to the feature-selection and appearance-computation modules, and to those modules involved in tracking through groups. The system aims to work as a stand-alone application in complex and dynamic scenarios. No a-priori knowledge about either the scene or the targets, based on a previous training period, is used. Hence, the scenario is completely unknown beforehand. Successful tracking has been demonstrated in well-known databases of both indoor and outdoor scenarios. Accurate and robust localisations have been yielded during long-term target merging and occlusions. |
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Springer-Verlag |
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0932-8092 |
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ISE @ ise @ RGP2010 |
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1158 |
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Author |
Mikhail Mozerov; Ignasi Rius; Xavier Roca; Jordi Gonzalez |
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Title |
Nonlinear synchronization for automatic learning of 3D pose variability in human motion sequences |
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Journal Article |
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2010 |
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EURASIP Journal on Advances in Signal Processing |
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EURASIPJ |
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Article ID 507247
A dense matching algorithm that solves the problem of synchronizing prerecorded human motion sequences, which show different speeds and accelerations, is proposed. The approach is based on minimization of MRF energy and solves the problem by using Dynamic Programming. Additionally, an optimal sequence is automatically selected from the input dataset to be a time-scale pattern for all other sequences. The paper utilizes an action specific model which automatically learns the variability of 3D human postures observed in a set of training sequences. The model is trained using the public CMU motion capture dataset for the walking action, and a mean walking performance is automatically learnt. Additionally, statistics about the observed variability of the postures and motion direction are also computed at each time step. The synchronized motion sequences are used to learn a model of human motion for action recognition and full-body tracking purposes. |
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1110-8657 |
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ISE @ ise @ MRR2010 |
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1208 |
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Author |
Arjan Gijsenij; Theo Gevers; Joost Van de Weijer |
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Title |
Generalized Gamut Mapping using Image Derivative Structures for Color Constancy |
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Journal Article |
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2010 |
Publication |
International Journal of Computer Vision |
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IJCV |
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86 |
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2-3 |
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127-139 |
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The gamut mapping algorithm is one of the most promising methods to achieve computational color constancy. However, so far, gamut mapping algorithms are restricted to the use of pixel values to estimate the illuminant. Therefore, in this paper, gamut mapping is extended to incorporate the statistical nature of images. It is analytically shown that the proposed gamut mapping framework is able to include any linear filter output. The main focus is on the local n-jet describing the derivative structure of an image. It is shown that derivatives have the advantage over pixel values to be invariant to disturbing effects (i.e. deviations of the diagonal model) such as saturated colors and diffuse light. Further, as the n-jet based gamut mapping has the ability to use more information than pixel values alone, the combination of these algorithms are more stable than the regular gamut mapping algorithm. Different methods of combining are proposed. Based on theoretical and experimental results conducted on large scale data sets of hyperspectral, laboratory and realworld scenes, it can be derived that (1) in case of deviations of the diagonal model, the derivative-based approach outperforms the pixel-based gamut mapping, (2) state-of-the-art algorithms are outperformed by the n-jet based gamut mapping, (3) the combination of the different n-jet based gamut |
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Kluwer Academic Publishers Hingham, MA, USA |
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0920-5691 |
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CAT @ cat @ GGW2010 |
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1274 |
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Author |
David Augusto Rojas; Joost Van de Weijer; Theo Gevers |
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Title |
Color Edge Saliency Boosting using Natural Image Statistics |
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Conference Article |
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2010 |
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5th European Conference on Colour in Graphics, Imaging and Vision and 12th International Symposium on Multispectral Colour Science |
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228–234 |
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State of the art methods for image matching, content-based retrieval and recognition use local features. Most of these still exploit only the luminance information for detection. The color saliency boosting algorithm has provided an efficient method to exploit the saliency of color edges based on information theory. However, during the design of this algorithm, some issues were not addressed in depth: (1) The method has ignored the underlying distribution of derivatives in natural images. (2) The dependence of information content in color-boosted edges on its spatial derivatives has not been quantitatively established. (3) To evaluate luminance and color contributions to saliency of edges, a parameter gradually balancing both contributions is required.
We introduce a novel algorithm, based on the principles of independent component analysis, which models the first order derivatives of color natural images by a generalized Gaussian distribution. Furthermore, using this probability model we show that for images with a Laplacian distribution, which is a particular case of generalized Gaussian distribution, the magnitudes of color-boosted edges reflect their corresponding information content. In order to evaluate the impact of color edge saliency in real world applications, we introduce an extension of the Laplacian-of-Gaussian detector to color, and the performance for image matching is evaluated. Our experiments show that our approach provides more discriminative regions in comparison with the original detector. |
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Joensuu, Finland |
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9781617388897 |
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CGIV/MCS |
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CAT @ cat @ RWG2010 |
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1306 |
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Author |
Wenjuan Gong; Andrew Bagdanov; Xavier Roca; Jordi Gonzalez |
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Title |
Automatic Key Pose Selection for 3D Human Action Recognition |
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Conference Article |
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2010 |
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6th International Conference on Articulated Motion and Deformable Objects |
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6169 |
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290–299 |
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This article describes a novel approach to the modeling of human actions in 3D. The method we propose is based on a “bag of poses” model that represents human actions as histograms of key-pose occurrences over the course of a video sequence. Actions are first represented as 3D poses using a sequence of 36 direction cosines corresponding to the angles 12 joints form with the world coordinate frame in an articulated human body model. These pose representations are then projected to three-dimensional, action-specific principal eigenspaces which we refer to as aSpaces. We introduce a method for key-pose selection based on a local-motion energy optimization criterion and we show that this method is more stable and more resistant to noisy data than other key-poses selection criteria for action recognition. |
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Springer Verlag |
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0302-9743 |
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978-3-642-14060-0 |
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AMDO |
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DAG @ dag @ GBR2010 |
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1317 |
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Nataliya Shapovalova |
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On Importance of Interaction and Context |
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2010 |
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CVC Technical Report |
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155 |
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Master's thesis |
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Admin @ si @ Sha2010 |
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1355 |
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Author |
Zhanwu Xiong |
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A Pompd Model for Active Camera Control |
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2010 |
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CVC Technical Report |
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156 |
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Admin @ si @ Xio2010 |
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1356 |
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