Simone Balocco, Carlo Gatta, Oriol Pujol, J. Mauri, & Petia Radeva. (2010). SRBF: Speckle Reducing Bilateral Filtering. UMB - Ultrasound in Medicine and Biology, 36(8), 1353–1363.
Abstract: Speckle noise negatively affects medical ultrasound image shape interpretation and boundary detection. Speckle removal filters are widely used to selectively remove speckle noise without destroying important image features to enhance object boundaries. In this article, a fully automatic bilateral filter tailored to ultrasound images is proposed. The edge preservation property is obtained by embedding noise statistics in the filter framework. Consequently, the filter is able to tackle the multiplicative behavior modulating the smoothing strength with respect to local statistics. The in silico experiments clearly showed that the speckle reducing bilateral filter (SRBF) has superior performances to most of the state of the art filtering methods. The filter is tested on 50 in vivo US images and its influence on a segmentation task is quantified. The results using SRBF filtered data sets show a superior performance to using oriented anisotropic diffusion filtered images. This improvement is due to the adaptive support of SRBF and the embedded noise statistics, yielding a more homogeneous smoothing. SRBF results in a fully automatic, fast and flexible algorithm potentially suitable in wide ranges of speckle noise sizes, for different medical applications (IVUS, B-mode, 3-D matrix array US).
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Marco Pedersoli, Andrea Vedaldi, & Jordi Gonzalez. (2011). A Coarse-to-fine Approach for fast Deformable Object Detection. In IEEE conference on Computer Vision and Pattern Recognition (pp. 1353–1360).
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Adriana Romero, Carlo Gatta, & Gustavo Camps-Valls. (2016). Unsupervised Deep Feature Extraction for Remote Sensing Image Classification. TGRS - IEEE Transaction on Geoscience and Remote Sensing, 54(3), 1349–1362.
Abstract: This paper introduces the use of single-layer and deep convolutional networks for remote sensing data analysis. Direct application to multi- and hyperspectral imagery of supervised (shallow or deep) convolutional networks is very challenging given the high input data dimensionality and the relatively small amount of available labeled data. Therefore, we propose the use of greedy layerwise unsupervised pretraining coupled with a highly efficient algorithm for unsupervised learning of sparse features. The algorithm is rooted on sparse representations and enforces both population and lifetime sparsity of the extracted features, simultaneously. We successfully illustrate the expressive power of the extracted representations in several scenarios: classification of aerial scenes, as well as land-use classification in very high resolution or land-cover classification from multi- and hyperspectral images. The proposed algorithm clearly outperforms standard principal component analysis (PCA) and its kernel counterpart (kPCA), as well as current state-of-the-art algorithms of aerial classification, while being extremely computationally efficient at learning representations of data. Results show that single-layer convolutional networks can extract powerful discriminative features only when the receptive field accounts for neighboring pixels and are preferred when the classification requires high resolution and detailed results. However, deep architectures significantly outperform single-layer variants, capturing increasing levels of abstraction and complexity throughout the feature hierarchy.
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Santiago Segui, Michal Drozdzal, Fernando Vilariño, Carolina Malagelada, Fernando Azpiroz, Petia Radeva, et al. (2012). Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy. TITB - IEEE Transactions on Information Technology in Biomedicine, 16(6), 1341–1352.
Abstract: Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media.
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Albert Gordo, Alicia Fornes, & Ernest Valveny. (2013). Writer identification in handwritten musical scores with bags of notes. PR - Pattern Recognition, 46(5), 1337–1345.
Abstract: Writer Identification is an important task for the automatic processing of documents. However, the identification of the writer in graphical documents is still challenging. In this work, we adapt the Bag of Visual Words framework to the task of writer identification in handwritten musical scores. A vanilla implementation of this method already performs comparably to the state-of-the-art. Furthermore, we analyze the effect of two improvements of the representation: a Bhattacharyya embedding, which improves the results at virtually no extra cost, and a Fisher Vector representation that very significantly improves the results at the cost of a more complex and costly representation. Experimental evaluation shows results more than 20 points above the state-of-the-art in a new, challenging dataset.
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Antonio Hernandez, Carlo Gatta, Sergio Escalera, Laura Igual, Victoria Martin-Yuste, Manel Sabate, et al. (2012). Accurate coronary centerline extraction, caliber estimation and catheter detection in angiographies. TITB - IEEE Transactions on Information Technology in Biomedicine, 16(6), 1332–1340.
Abstract: Segmentation of coronary arteries in X-Ray angiography is a fundamental tool to evaluate arterial diseases and choose proper coronary treatment. The accurate segmentation of coronary arteries has become an important topic for the registration of different modalities which allows physicians rapid access to different medical imaging information from Computed Tomography (CT) scans or Magnetic Resonance Imaging (MRI). In this paper, we propose an accurate fully automatic algorithm based on Graph-cuts for vessel centerline extraction, caliber estimation, and catheter detection. Vesselness, geodesic paths, and a new multi-scale edgeness map are combined to customize the Graph-cuts approach to the segmentation of tubular structures, by means of a global optimization of the Graph-cuts energy function. Moreover, a novel supervised learning methodology that integrates local and contextual information is proposed for automatic catheter detection. We evaluate the method performance on three datasets coming from different imaging systems. The method performs as good as the expert observer w.r.t. centerline detection and caliber estimation. Moreover, the method discriminates between arteries and catheter with an accuracy of 96.5%, sensitivity of 72%, and precision of 97.4%.
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Aura Hernandez-Sabate, David Rotger, & Debora Gil. (2008). Image-based ECG sampling of IVUS sequences. In Proc. IEEE Ultrasonics Symp. IUS 2008 (pp. 1330–1333).
Abstract: Longitudinal motion artifacts in IntraVascular UltraSound (IVUS) sequences hinders a properly 3D reconstruction and vessel measurements. Most of current techniques base on the ECG signal to obtain a gated pullback without the longitudinal artifact by using a specific hardware or the ECG signal itself. The potential of IVUS images processing for phase retrieval still remains little explored. In this paper, we present a fast forward image-based algorithm to approach ECG sampling. Inspired on the fact that maximum and minimum lumen areas are related to end-systole and end-diastole, our cardiac phase retrieval is based on the analysis of tissue density of mass along the sequence. The comparison between automatic and manual phase retrieval (0.07 ± 0.07 mm. of error) encourages a deep validation contrasting with ECG signals.
Keywords: Longitudinal Motion; Image-based ECG-gating; Fourier analysis
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Miguel Reyes, Albert Clapes, Jose Ramirez, Juan R Revilla, & Sergio Escalera. (2013). Automatic Digital Biometry Analysis based on Depth Maps. COMPUTIND - Computers in Industry, 64(9), 1316–1325.
Abstract: World Health Organization estimates that 80% of the world population is affected by back-related disorders during his life. Current practices to analyze musculo-skeletal disorders (MSDs) are expensive, subjective, and invasive. In this work, we propose a tool for static body posture analysis and dynamic range of movement estimation of the skeleton joints based on 3D anthropometric information from multi-modal data. Given a set of keypoints, RGB and depth data are aligned, depth surface is reconstructed, keypoints are matched, and accurate measurements about posture and spinal curvature are computed. Given a set of joints, range of movement measurements is also obtained. Moreover, gesture recognition based on joint movements is performed to look for the correctness in the development of physical exercises. The system shows high precision and reliable measurements, being useful for posture reeducation purposes to prevent MSDs, as well as tracking the posture evolution of patients in rehabilitation treatments.
Keywords: Multi-modal data fusion; Depth maps; Posture analysis; Anthropometric data; Musculo-skeletal disorders; Gesture analysis
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Jose Seabra, Francesco Ciompi, Oriol Pujol, J. Mauri, Petia Radeva, & Joao Sanchez. (2011). Rayleigh Mixture Model for Plaque Characterization in Intravascular Ultrasound. TBME - IEEE Transactions on Biomedical Engineering, 58(5), 1314–1324.
Abstract: Vulnerable plaques are the major cause of carotid and coronary vascular problems, such as heart attack or stroke. A correct modeling of plaque echomorphology and composition can help the identification of such lesions. The Rayleigh distribution is widely used to describe (nearly) homogeneous areas in ultrasound images. Since plaques may contain tissues with heterogeneous regions, more complex distributions depending on multiple parameters are usually needed, such as Rice, K or Nakagami distributions. In such cases, the problem formulation becomes more complex, and the optimization procedure to estimate the plaque echomorphology is more difficult. Here, we propose to model the tissue echomorphology by means of a mixture of Rayleigh distributions, known as the Rayleigh mixture model (RMM). The problem formulation is still simple, but its ability to describe complex textural patterns is very powerful. In this paper, we present a method for the automatic estimation of the RMM mixture parameters by means of the expectation maximization algorithm, which aims at characterizing tissue echomorphology in ultrasound (US). The performance of the proposed model is evaluated with a database of in vitro intravascular US cases. We show that the mixture coefficients and Rayleigh parameters explicitly derived from the mixture model are able to accurately describe different plaque types and to significantly improve the characterization performance of an already existing methodology.
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L. Rothacker, Marçal Rusiñol, & G.A. Fink. (2013). Bag-of-Features HMMs for segmentation-free word spotting in handwritten documents. In 12th International Conference on Document Analysis and Recognition (pp. 1305–1309).
Abstract: Recent HMM-based approaches to handwritten word spotting require large amounts of learning samples and mostly rely on a prior segmentation of the document. We propose to use Bag-of-Features HMMs in a patch-based segmentation-free framework that are estimated by a single sample. Bag-of-Features HMMs use statistics of local image feature representatives. Therefore they can be considered as a variant of discrete HMMs allowing to model the observation of a number of features at a point in time. The discrete nature enables us to estimate a query model with only a single example of the query provided by the user. This makes our method very flexible with respect to the availability of training data. Furthermore, we are able to outperform state-of-the-art results on the George Washington dataset.
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Ekta Vats, Anders Hast, & Alicia Fornes. (2019). Training-Free and Segmentation-Free Word Spotting using Feature Matching and Query Expansion. In 15th International Conference on Document Analysis and Recognition (pp. 1294–1299).
Abstract: Historical handwritten text recognition is an interesting yet challenging problem. In recent times, deep learning based methods have achieved significant performance in handwritten text recognition. However, handwriting recognition using deep learning needs training data, and often, text must be previously segmented into lines (or even words). These limitations constrain the application of HTR techniques in document collections, because training data or segmented words are not always available. Therefore, this paper proposes a training-free and segmentation-free word spotting approach that can be applied in unconstrained scenarios. The proposed word spotting framework is based on document query word expansion and relaxed feature matching algorithm, which can easily be parallelised. Since handwritten words posses distinct shape and characteristics, this work uses a combination of different keypoint detectors
and Fourier-based descriptors to obtain a sufficient degree of relaxed matching. The effectiveness of the proposed method is empirically evaluated on well-known benchmark datasets using standard evaluation measures. The use of informative features along with query expansion significantly contributed in efficient performance of the proposed method.
Keywords: Word spotting; Segmentation-free; Trainingfree; Query expansion; Feature matching
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Partha Pratim Roy, Umapada Pal, & Josep Llados. (2011). Document Seal Detection Using Ght and Character Proximity Graphs. PR - Pattern Recognition, 44(6), 1282–1295.
Abstract: This paper deals with automatic detection of seal (stamp) from documents with cluttered background. Seal detection involves a difficult challenge due to its multi-oriented nature, arbitrary shape, overlapping of its part with signature, noise, etc. Here, a seal object is characterized by scale and rotation invariant spatial feature descriptors computed from recognition result of individual connected components (characters). Scale and rotation invariant features are used in a Support Vector Machine (SVM) classifier to recognize multi-scale and multi-oriented text characters. The concept of generalized Hough transform (GHT) is used to detect the seal and a voting scheme is designed for finding possible location of the seal in a document based on the spatial feature descriptor of neighboring component pairs. The peak of votes in GHT accumulator validates the hypothesis to locate the seal in a document. Experiment is performed in an archive of historical documents of handwritten/printed English text. Experimental results show that the method is robust in locating seal instances of arbitrary shape and orientation in documents, and also efficient in indexing a collection of documents for retrieval purposes.
Keywords: Seal recognition; Graphical symbol spotting; Generalized Hough transform; Multi-oriented character recognition
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Antonio Hernandez, Carlos Primo, & Sergio Escalera. (2011). Automatic user interaction correction via Multi-label Graph cuts. In In ICCV 2011 1st IEEE International Workshop on Human Interaction in Computer Vision HICV (pp. 1276–1281).
Abstract: Most applications in image segmentation requires from user interaction in order to achieve accurate results. However, user wants to achieve the desired segmentation accuracy reducing effort of manual labelling. In this work, we extend standard multi-label α-expansion Graph Cut algorithm so that it analyzes the interaction of the user in order to modify the object model and improve final segmentation of objects. The approach is inspired in the fact that fast user interactions may introduce some pixel errors confusing object and background. Our results with different degrees of user interaction and input errors show high performance of the proposed approach on a multi-label human limb segmentation problem compared with classical α-expansion algorithm.
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Zhijie Fang, & Antonio Lopez. (2018). Is the Pedestrian going to Cross? Answering by 2D Pose Estimation. In IEEE Intelligent Vehicles Symposium (pp. 1271–1276).
Abstract: Our recent work suggests that, thanks to nowadays powerful CNNs, image-based 2D pose estimation is a promising cue for determining pedestrian intentions such as crossing the road in the path of the ego-vehicle, stopping before entering the road, and starting to walk or bending towards the road. This statement is based on the results obtained on non-naturalistic sequences (Daimler dataset), i.e. in sequences choreographed specifically for performing the study. Fortunately, a new publicly available dataset (JAAD) has appeared recently to allow developing methods for detecting pedestrian intentions in naturalistic driving conditions; more specifically, for addressing the relevant question is the pedestrian going to cross? Accordingly, in this paper we use JAAD to assess the usefulness of 2D pose estimation for answering such a question. We combine CNN-based pedestrian detection, tracking and pose estimation to predict the crossing action from monocular images. Overall, the proposed pipeline provides new state-ofthe-art results.
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Lluis Pere de las Heras, Joan Mas, Gemma Sanchez, & Ernest Valveny. (2011). Wall Patch-Based Segmentation in Architectural Floorplans. In 11th International Conference on Document Analysis and Recognition (pp. 1270–1274).
Abstract: Segmentation of architectural floor plans is a challenging task, mainly because of the large variability in the notation between different plans. In general, traditional techniques, usually based on analyzing and grouping structural primitives obtained by vectorization, are only able to handle a reduced range of similar notations. In this paper we propose an alternative patch-based segmentation approach working at pixel level, without need of vectorization. The image is divided into a set of patches and a set of features is extracted for every patch. Then, each patch is assigned to a visual word of a previously learned vocabulary and given a probability of belonging to each class of objects. Finally, a post-process assigns the final label for every pixel. This approach has been applied to the detection of walls on two datasets of architectural floor plans with different notations, achieving high accuracy rates.
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